Wall clock time and date at job start Tue Mar 31 2020 17:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 C 1.52992 * 109.47385 * 180.02562 * 15 13 12 17 17 N 1.46506 * 109.47441 * 180.02562 * 16 15 13 18 18 C 1.40207 * 120.50717 * 89.99761 * 17 16 15 19 19 C 1.38502 * 120.74375 * 15.46550 * 18 17 16 20 20 C 1.38282 * 119.81854 * 180.02562 * 19 18 17 21 21 C 1.38282 * 120.19819 * 0.03388 * 20 19 18 22 22 C 1.38308 * 120.25873 * 359.96518 * 21 20 19 23 23 C 1.38396 * 119.87332 * 359.97438 * 22 21 20 24 24 O 1.35983 * 120.66329 * 180.09752 * 23 22 21 25 25 C 1.43005 * 116.71523 * 147.15924 * 24 23 22 26 26 H 1.08998 * 109.44868 * 166.43892 * 25 24 23 27 27 C 1.53001 * 109.44214 * 286.34150 * 25 24 23 28 28 C 1.35083 * 120.50510 * 269.72396 * 17 16 15 29 29 O 1.21295 * 120.13690 * 1.66292 * 28 17 16 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 34 34 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 35 35 H 1.08997 * 109.47364 * 300.00354 * 15 13 12 36 36 H 1.09001 * 109.46822 * 60.00123 * 15 13 12 37 37 H 1.09007 * 109.47184 * 300.00285 * 16 15 13 38 38 H 1.09001 * 109.47135 * 60.00198 * 16 15 13 39 39 H 1.08004 * 120.09100 * 0.04339 * 19 18 17 40 40 H 1.08003 * 119.90275 * 180.02562 * 20 19 18 41 41 H 1.08004 * 119.86876 * 179.97438 * 21 20 19 42 42 H 1.08006 * 120.06478 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.47285 * 59.99997 * 27 25 24 44 44 H 1.09000 * 109.47081 * 179.97438 * 27 25 24 45 45 H 1.08993 * 109.47257 * 299.99692 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2547 -4.7588 17 7 3.1882 -0.4361 -5.9553 18 6 2.2900 -1.0623 -6.8311 19 6 0.9346 -0.7832 -6.7740 20 6 0.0657 -1.4122 -7.6466 21 6 0.5462 -2.3183 -8.5741 22 6 1.8986 -2.6013 -8.6361 23 6 2.7745 -1.9747 -7.7669 24 8 4.1075 -2.2394 -7.8151 25 6 4.9891 -1.1619 -7.4883 26 1 5.9945 -1.5514 -7.3283 27 6 5.0111 -0.1547 -8.6398 28 6 4.5093 -0.4748 -6.2346 29 8 5.3069 0.0382 -5.4783 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 0.7096 1.1617 3.4844 34 1 2.2491 -1.6316 -1.1527 35 1 3.6479 -1.1211 -3.3988 36 1 1.9759 -1.5504 -3.8327 37 1 1.7020 0.6477 -4.9480 38 1 3.3741 1.0762 -4.5137 39 1 0.5574 -0.0759 -6.0501 40 1 -0.9914 -1.1953 -7.6036 41 1 -0.1372 -2.8069 -9.2529 42 1 2.2706 -3.3092 -9.3621 43 1 4.0058 0.2343 -8.8015 44 1 5.6826 0.6670 -8.3910 45 1 5.3602 -0.6477 -9.5470 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194741791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:01 Heat of formation + Delta-G solvation = -100.522563 kcal Electronic energy + Delta-G solvation = -28463.192328 eV Core-core repulsion = 24445.116998 eV Total energy + Delta-G solvation = -4018.075330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.79986 -40.71493 -39.99291 -38.79738 -37.14356 -36.65983 -34.38484 -33.30521 -32.72754 -31.32391 -30.86748 -29.79064 -27.38266 -26.77840 -24.97577 -24.42981 -23.36837 -22.42602 -21.19321 -20.33178 -20.24419 -19.10587 -18.44250 -17.60270 -17.41735 -17.10147 -16.83633 -16.60591 -16.47271 -16.23315 -15.93626 -15.64866 -15.24011 -15.12488 -14.80976 -14.52466 -14.27697 -14.18082 -13.97094 -13.64857 -13.53706 -13.43558 -13.13849 -13.00374 -12.88749 -12.85349 -12.75496 -12.39049 -12.29084 -12.18145 -12.15461 -12.10980 -11.57394 -11.15271 -11.01984 -10.82379 -10.60980 -9.81562 -9.65569 -8.91365 -8.20498 -6.38391 0.05555 0.29964 1.16606 1.29577 1.42715 1.44866 1.52735 1.70077 2.20863 2.33253 2.58214 2.75579 2.83945 3.09688 3.56981 3.64804 3.72736 3.74962 3.90353 3.93035 4.04881 4.21395 4.30780 4.38871 4.45643 4.52942 4.57871 4.67480 4.71494 4.73493 4.77469 4.90232 4.98032 5.02321 5.06336 5.27610 5.31721 5.40127 5.55548 5.56394 5.65138 5.70330 5.83309 5.86321 6.06967 6.28923 6.54558 6.68584 6.86988 7.27969 7.46431 8.85610 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.002596 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.674842 B =10781.597782 C =11477.056757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.002 1.002 4 C -0.552 4.552 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.263 1.263 12 N -0.704 5.704 13 C 0.506 3.494 14 O -0.596 6.596 15 C -0.137 4.137 16 C 0.131 3.869 17 N -0.547 5.547 18 C 0.074 3.926 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.102 4.102 22 C -0.109 4.109 23 C 0.063 3.937 24 O -0.304 6.304 25 C 0.084 3.916 26 H 0.167 0.833 27 C -0.169 4.169 28 C 0.481 3.519 29 O -0.545 6.545 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.015 0.985 33 H 0.266 0.734 34 H 0.405 0.595 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 -9.713 -27.922 29.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.016 0.984 4 C -0.590 4.590 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.187 1.187 12 N -0.353 5.353 13 C 0.292 3.708 14 O -0.478 6.478 15 C -0.177 4.177 16 C 0.009 3.991 17 N -0.271 5.271 18 C -0.019 4.019 19 C -0.156 4.156 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.127 4.127 23 C 0.017 3.983 24 O -0.219 6.219 25 C 0.025 3.975 26 H 0.184 0.816 27 C -0.226 4.226 28 C 0.271 3.729 29 O -0.422 6.422 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.240 0.760 35 H 0.114 0.886 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.183 0.817 42 H 0.176 0.824 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.522 -8.626 -27.384 28.751 hybrid contribution 0.398 0.069 1.608 1.658 sum 1.920 -8.557 -25.775 27.226 Atomic orbital electron populations 1.21883 0.97906 0.99573 0.99755 1.18369 0.91401 0.91835 0.81770 0.98427 1.21527 1.32832 1.13684 0.90961 0.91060 1.25799 0.94809 0.95582 1.02305 1.70038 1.36844 1.23801 1.24755 0.85395 0.78559 0.78796 0.77576 1.19788 1.20948 1.18735 1.46303 1.64925 1.14274 1.09756 1.20875 0.77469 0.86993 0.85418 1.90644 1.53233 1.17940 1.85994 1.21814 1.04025 1.00056 0.91853 1.21219 1.01919 0.93966 0.82017 1.45779 1.06130 1.52123 1.23099 1.18371 0.91300 0.98359 0.93911 1.20969 0.90468 1.02123 1.01994 1.21351 1.00725 0.96165 0.94474 1.21416 0.94466 0.97402 0.98765 1.20878 0.92659 1.01517 0.97681 1.18878 0.83961 0.98472 0.96948 1.86277 1.13338 1.35999 1.86240 1.23039 0.95391 0.88377 0.90674 0.81553 1.22315 1.03612 0.98878 0.97835 1.22253 0.81729 0.79917 0.89045 1.90778 1.54052 1.46739 1.50599 0.91444 0.93979 0.96575 0.92445 0.76031 0.88638 0.86407 0.87905 0.90697 0.85106 0.82857 0.81696 0.82350 0.92363 0.89822 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.07 16 2 C 0.27 14.26 2.56 44.24 0.11 14.37 16 3 H 0.00 -0.14 7.58 -2.39 -0.02 -0.15 16 4 C -0.55 -29.85 8.73 25.60 0.22 -29.63 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.02 0.84 5.30 84.66 0.45 1.28 16 7 N -0.92 -53.12 11.32 21.45 0.24 -52.88 16 8 Si 0.97 42.59 29.54 68.60 2.03 44.62 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 N -0.70 -30.00 5.07 -446.09 -2.26 -32.26 16 13 C 0.51 20.57 7.79 87.66 0.68 21.25 16 14 O -0.60 -29.17 15.65 -3.05 -0.05 -29.22 16 15 C -0.14 -4.10 6.02 29.84 0.18 -3.92 16 16 C 0.13 3.85 4.49 86.38 0.39 4.24 16 17 N -0.55 -14.02 2.72 -630.25 -1.71 -15.73 16 18 C 0.07 1.57 6.39 38.14 0.24 1.82 16 19 C -0.14 -2.48 9.36 22.34 0.21 -2.27 16 20 C -0.11 -1.39 10.04 22.29 0.22 -1.16 16 21 C -0.10 -1.03 10.04 22.30 0.22 -0.80 16 22 C -0.11 -1.39 10.00 22.32 0.22 -1.16 16 23 C 0.06 1.17 5.85 22.59 0.13 1.31 16 24 O -0.30 -5.72 10.18 -93.35 -0.95 -6.67 16 25 C 0.08 1.52 3.82 29.88 0.11 1.64 16 26 H 0.17 2.37 8.14 -2.39 -0.02 2.35 16 27 C -0.17 -2.28 9.29 71.98 0.67 -1.61 16 28 C 0.48 12.75 6.92 87.64 0.61 13.35 16 29 O -0.54 -18.46 16.77 -3.08 -0.05 -18.51 16 30 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.40 14.64 8.54 -92.71 -0.79 13.84 16 35 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.10 2.84 5.92 -2.38 -0.01 2.82 16 38 H 0.07 2.61 7.44 -2.39 -0.02 2.60 16 39 H 0.13 2.49 6.12 -2.91 -0.02 2.47 16 40 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 41 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 42 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.06 0.89 7.81 -2.38 -0.02 0.87 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.12 375.10 2.82 -71.30 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.23 Total: 26.71 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 5.35 Total: 12.64 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -3.73 Total: -100.87 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -1.05 Total: -54.40 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -74.12 2.82 -71.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194741791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.222 kcal (2) G-P(sol) polarization free energy of solvation -74.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds