Wall clock time and date at job start Tue Mar 31 2020 18:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36006 * 116.99810 * 2 1 4 4 C 1.38166 * 119.99801 * 359.97438 * 3 2 1 5 5 C 1.39753 * 119.84619 * 180.02562 * 4 3 2 6 6 C 1.43195 * 120.07799 * 180.02562 * 5 4 3 7 7 N 5.84112 * 81.26100 * 359.97438 * 2 1 3 8 8 C 1.39725 * 119.84345 * 0.02562 * 5 4 3 9 9 C 1.37827 * 120.00021 * 359.71872 * 8 5 4 10 10 C 1.38805 * 120.14952 * 0.55224 * 9 8 5 11 11 O 1.35843 * 119.92092 * 179.71767 * 10 9 8 12 12 C 1.42906 * 117.00058 * 359.73570 * 11 10 9 13 13 C 1.52994 * 109.47097 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47118 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47159 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00262 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72352 * 15 14 13 18 18 C 1.46499 * 120.00199 * 180.27479 * 17 15 14 19 19 H 1.09007 * 109.47463 * 325.00619 * 18 17 15 20 20 C 1.53000 * 109.47070 * 85.00207 * 18 17 15 21 21 C 1.50697 * 109.47763 * 205.00186 * 18 17 15 22 22 H 1.08011 * 119.99571 * 0.02562 * 21 18 17 23 23 C 1.37871 * 120.00501 * 179.97438 * 21 18 17 24 24 N 1.31515 * 119.99867 * 0.02562 * 23 21 18 25 25 Si 1.86797 * 120.00050 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.47175 * 60.00893 * 25 23 21 27 27 H 1.48504 * 109.47307 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47672 * 300.00505 * 25 23 21 29 29 H 1.09008 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47350 * 299.99981 * 1 2 3 31 31 H 1.09000 * 109.47196 * 60.00165 * 1 2 3 32 32 H 1.07996 * 120.07559 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.00103 * 179.97438 * 8 5 4 34 34 H 1.07998 * 119.92707 * 180.29754 * 9 8 5 35 35 H 1.08998 * 109.47162 * 59.99774 * 12 11 10 36 36 H 1.09003 * 109.46486 * 299.99262 * 12 11 10 37 37 H 1.09004 * 109.47131 * 59.99640 * 13 12 11 38 38 H 1.09000 * 109.47504 * 299.99944 * 13 12 11 39 39 H 1.09004 * 109.47066 * 60.00025 * 14 13 12 40 40 H 1.08994 * 109.47405 * 299.99855 * 14 13 12 41 41 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 42 42 H 1.08998 * 109.47598 * 180.02562 * 20 18 17 43 43 H 1.09005 * 109.47473 * 300.00173 * 20 18 17 44 44 H 1.08998 * 109.46925 * 59.99877 * 20 18 17 45 45 H 0.96999 * 119.99893 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2937 2.3706 -0.0005 5 6 1.9315 3.6141 -0.0011 6 6 1.1564 4.8181 -0.0011 7 7 0.5415 5.7733 -0.0026 8 6 3.3272 3.6798 -0.0016 9 6 4.0716 2.5199 0.0042 10 6 3.4382 1.2848 -0.0009 11 8 4.1765 0.1446 -0.0009 12 6 5.5979 0.2920 -0.0013 13 6 6.2540 -1.0901 -0.0006 14 6 7.7758 -0.9322 -0.0017 15 6 8.4221 -2.2936 -0.0003 16 8 7.7334 -3.2919 0.0009 17 7 9.7655 -2.4018 -0.0066 18 6 10.3938 -3.7252 -0.0114 19 1 9.7918 -4.4154 0.5797 20 6 10.4925 -4.2377 -1.4496 21 6 11.7752 -3.6278 0.5829 22 1 12.1478 -2.6752 0.9299 23 6 12.5631 -4.7546 0.6846 24 7 12.1092 -5.9145 0.2625 25 14 14.2757 -4.6335 1.4206 26 1 14.1805 -4.1353 2.8163 27 1 14.9125 -5.9751 1.4159 28 1 15.0958 -3.6940 0.6145 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2152 2.3154 -0.0014 33 1 3.8227 4.6394 -0.0025 34 1 5.1504 2.5720 0.0087 35 1 5.9065 0.8408 0.8884 36 1 5.9059 0.8403 -0.8916 37 1 5.9454 -1.6393 -0.8901 38 1 5.9459 -1.6381 0.8898 39 1 8.0848 -0.3829 0.8877 40 1 8.0837 -0.3844 -0.8923 41 1 10.3165 -1.6034 -0.0079 42 1 10.9595 -5.2226 -1.4532 43 1 9.4933 -4.3083 -1.8796 44 1 11.0944 -3.5476 -2.0408 45 1 12.6637 -6.7073 0.3338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194747085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:27 Heat of formation + Delta-G solvation = -67.602654 kcal Electronic energy + Delta-G solvation = -26446.443384 eV Core-core repulsion = 22429.795569 eV Total energy + Delta-G solvation = -4016.647816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08871 -39.19570 -38.76568 -38.02335 -36.34767 -34.95388 -33.68433 -32.37260 -31.11699 -30.74473 -29.18322 -27.80302 -27.03218 -25.26389 -23.89618 -23.36400 -21.82354 -20.70421 -19.83530 -19.41916 -18.50852 -17.25621 -17.11070 -16.75373 -16.70017 -16.00865 -15.70780 -15.32843 -15.13771 -14.91447 -14.71830 -14.30437 -14.19991 -14.07203 -13.89814 -13.38240 -13.10243 -12.87665 -12.71534 -12.57578 -12.38466 -12.26334 -11.98853 -11.82254 -11.70613 -11.52969 -11.37384 -11.19546 -11.08588 -10.96020 -10.74423 -10.67847 -10.33979 -10.24617 -9.34438 -9.08008 -9.03531 -8.56127 -8.30893 -7.92224 -6.13406 -4.23050 0.31181 0.77322 2.24538 2.49288 2.70815 2.81037 3.24159 3.29764 3.30520 3.36409 3.38303 3.43981 4.06341 4.23831 4.37071 4.38611 4.55797 4.61813 4.75232 4.77140 4.80020 4.87997 4.96796 5.07412 5.12449 5.18618 5.22802 5.33764 5.35449 5.49920 5.61755 5.74671 5.78180 5.98214 6.07154 6.27309 6.65542 6.81544 6.95521 7.06368 7.13117 7.14248 7.45349 7.54643 7.68086 7.90361 8.14194 8.65410 8.76619 9.12088 9.44691 10.92489 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.001666 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.533067 B =16802.104808 C =17588.944329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.298 6.298 3 C 0.097 3.903 4 C -0.128 4.128 5 C -0.039 4.039 6 C 0.261 3.739 7 N -0.423 5.423 8 C -0.058 4.058 9 C -0.181 4.181 10 C 0.144 3.856 11 O -0.293 6.293 12 C 0.055 3.945 13 C -0.102 4.102 14 C -0.139 4.139 15 C 0.500 3.500 16 O -0.554 6.554 17 N -0.710 5.710 18 C 0.263 3.737 19 H 0.048 0.952 20 C -0.147 4.147 21 C -0.535 4.535 22 H 0.060 0.940 23 C 0.066 3.934 24 N -0.883 5.883 25 Si 0.902 3.098 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.388 0.612 42 H 0.090 0.910 43 H 0.014 0.986 44 H 0.026 0.974 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.737 17.691 -1.285 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.212 6.212 3 C 0.051 3.949 4 C -0.149 4.149 5 C -0.043 4.043 6 C -0.054 4.054 7 N -0.098 5.098 8 C -0.079 4.079 9 C -0.199 4.199 10 C 0.096 3.904 11 O -0.205 6.205 12 C -0.019 4.019 13 C -0.140 4.140 14 C -0.179 4.179 15 C 0.284 3.716 16 O -0.434 6.434 17 N -0.358 5.358 18 C 0.161 3.839 19 H 0.066 0.934 20 C -0.205 4.205 21 C -0.573 4.573 22 H 0.078 0.922 23 C -0.137 4.137 24 N -0.520 5.520 25 Si 0.729 3.271 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.202 1.202 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.221 0.779 42 H 0.108 0.892 43 H 0.033 0.967 44 H 0.045 0.955 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.070 17.797 -1.303 26.856 hybrid contribution 1.424 0.387 0.362 1.519 sum -18.646 18.184 -0.941 26.062 Atomic orbital electron populations 1.23150 0.78224 1.04578 1.01258 1.86272 1.21223 1.24917 1.88748 1.18009 0.89132 0.85263 1.02461 1.20979 1.00303 0.89846 1.03768 1.15575 0.91617 0.86744 1.10319 1.25597 0.93422 0.92896 0.93530 1.81275 1.08567 1.10620 1.09360 1.20880 0.91215 0.98917 0.96914 1.21076 1.01181 0.90341 1.07339 1.18585 0.88417 0.86558 0.96886 1.86214 1.19518 1.27684 1.87110 1.23058 0.77270 0.99995 1.01625 1.21213 0.92879 0.94301 1.05615 1.21548 0.95149 0.97169 1.04050 1.20322 0.83358 0.90484 0.77392 1.90675 1.62871 1.38928 1.50879 1.46532 1.05328 1.11625 1.72294 1.18739 0.92416 0.78746 0.93964 0.93383 1.22073 0.97613 1.03439 0.97401 1.21180 0.99326 0.95106 1.41731 0.92152 1.24891 0.98560 0.95114 0.95157 1.69893 1.37243 0.99144 1.45765 0.86505 0.83648 0.77279 0.79622 1.20193 1.21127 1.20186 0.87743 0.92532 0.92530 0.83890 0.84403 0.83365 0.91480 0.91497 0.89893 0.89842 0.89166 0.89217 0.77940 0.89189 0.96653 0.95512 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.30 -2.83 10.27 -34.43 -0.35 -3.19 16 3 C 0.10 0.85 6.69 -39.19 -0.26 0.59 16 4 C -0.13 -0.87 8.74 -39.04 -0.34 -1.21 16 5 C -0.04 -0.27 5.74 -106.85 -0.61 -0.88 16 6 C 0.26 2.21 15.33 -22.48 -0.34 1.86 16 7 N -0.42 -4.56 18.54 41.84 0.78 -3.79 16 8 C -0.06 -0.34 9.74 -39.18 -0.38 -0.72 16 9 C -0.18 -1.17 9.01 -39.52 -0.36 -1.53 16 10 C 0.14 1.30 6.71 -38.95 -0.26 1.04 16 11 O -0.29 -3.17 9.91 -33.92 -0.34 -3.51 16 12 C 0.06 0.47 4.74 37.15 0.18 0.65 16 13 C -0.10 -1.20 4.87 -26.74 -0.13 -1.33 16 14 C -0.14 -1.63 5.70 -27.88 -0.16 -1.79 16 15 C 0.50 9.24 7.79 -10.98 -0.09 9.15 16 16 O -0.55 -12.76 15.65 5.55 0.09 -12.67 16 17 N -0.71 -14.03 5.07 -54.93 -0.28 -14.31 16 18 C 0.26 6.58 2.56 -69.08 -0.18 6.40 16 19 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 20 C -0.15 -3.60 9.26 37.16 0.34 -3.25 16 21 C -0.53 -13.92 8.73 -34.44 -0.30 -14.22 16 22 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 23 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 24 N -0.88 -24.65 11.32 55.43 0.63 -24.02 16 25 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 32 H 0.14 0.69 6.28 -52.49 -0.33 0.36 16 33 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 34 H 0.15 0.66 6.27 -52.49 -0.33 0.33 16 35 H 0.07 0.45 7.64 -51.93 -0.40 0.05 16 36 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 37 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.39 6.46 8.54 -40.82 -0.35 6.11 16 42 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -33.60 388.72 -6.86 -40.46 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.23 Total: 2.33 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.00 Total: -2.47 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 1.12 Total: -42.11 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.60 Total: -19.37 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.60 -6.86 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194747085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.139 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds