Wall clock time and date at job start Tue Mar 31 2020 18:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36006 * 116.99810 * 2 1 4 4 C 1.38166 * 119.99801 * 359.97438 * 3 2 1 5 5 C 1.39753 * 119.84619 * 180.02562 * 4 3 2 6 6 C 1.43195 * 120.07799 * 180.02562 * 5 4 3 7 7 N 5.84112 * 81.26100 * 359.97438 * 2 1 3 8 8 C 1.39725 * 119.84345 * 0.02562 * 5 4 3 9 9 C 1.37827 * 120.00021 * 359.71872 * 8 5 4 10 10 C 1.38805 * 120.14952 * 0.55224 * 9 8 5 11 11 O 1.35843 * 119.92092 * 179.71767 * 10 9 8 12 12 C 1.42906 * 117.00058 * 359.73570 * 11 10 9 13 13 C 1.52994 * 109.47097 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47118 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47159 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00262 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72352 * 15 14 13 18 18 C 1.46499 * 120.00199 * 180.27479 * 17 15 14 19 19 H 1.09007 * 109.47463 * 325.00619 * 18 17 15 20 20 C 1.53000 * 109.47070 * 85.00207 * 18 17 15 21 21 C 1.50697 * 109.47763 * 205.00186 * 18 17 15 22 22 H 1.08011 * 119.99571 * 0.02562 * 21 18 17 23 23 C 1.37871 * 120.00501 * 179.97438 * 21 18 17 24 24 N 1.31515 * 119.99867 * 0.02562 * 23 21 18 25 25 Si 1.86797 * 120.00050 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.47175 * 60.00893 * 25 23 21 27 27 H 1.48504 * 109.47307 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47672 * 300.00505 * 25 23 21 29 29 H 1.09008 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47350 * 299.99981 * 1 2 3 31 31 H 1.09000 * 109.47196 * 60.00165 * 1 2 3 32 32 H 1.07996 * 120.07559 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.00103 * 179.97438 * 8 5 4 34 34 H 1.07998 * 119.92707 * 180.29754 * 9 8 5 35 35 H 1.08998 * 109.47162 * 59.99774 * 12 11 10 36 36 H 1.09003 * 109.46486 * 299.99262 * 12 11 10 37 37 H 1.09004 * 109.47131 * 59.99640 * 13 12 11 38 38 H 1.09000 * 109.47504 * 299.99944 * 13 12 11 39 39 H 1.09004 * 109.47066 * 60.00025 * 14 13 12 40 40 H 1.08994 * 109.47405 * 299.99855 * 14 13 12 41 41 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 42 42 H 1.08998 * 109.47598 * 180.02562 * 20 18 17 43 43 H 1.09005 * 109.47473 * 300.00173 * 20 18 17 44 44 H 1.08998 * 109.46925 * 59.99877 * 20 18 17 45 45 H 0.96999 * 119.99893 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2937 2.3706 -0.0005 5 6 1.9315 3.6141 -0.0011 6 6 1.1564 4.8181 -0.0011 7 7 0.5415 5.7733 -0.0026 8 6 3.3272 3.6798 -0.0016 9 6 4.0716 2.5199 0.0042 10 6 3.4382 1.2848 -0.0009 11 8 4.1765 0.1446 -0.0009 12 6 5.5979 0.2920 -0.0013 13 6 6.2540 -1.0901 -0.0006 14 6 7.7758 -0.9322 -0.0017 15 6 8.4221 -2.2936 -0.0003 16 8 7.7334 -3.2919 0.0009 17 7 9.7655 -2.4018 -0.0066 18 6 10.3938 -3.7252 -0.0114 19 1 9.7918 -4.4154 0.5797 20 6 10.4925 -4.2377 -1.4496 21 6 11.7752 -3.6278 0.5829 22 1 12.1478 -2.6752 0.9299 23 6 12.5631 -4.7546 0.6846 24 7 12.1092 -5.9145 0.2625 25 14 14.2757 -4.6335 1.4206 26 1 14.1805 -4.1353 2.8163 27 1 14.9125 -5.9751 1.4159 28 1 15.0958 -3.6940 0.6145 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2152 2.3154 -0.0014 33 1 3.8227 4.6394 -0.0025 34 1 5.1504 2.5720 0.0087 35 1 5.9065 0.8408 0.8884 36 1 5.9059 0.8403 -0.8916 37 1 5.9454 -1.6393 -0.8901 38 1 5.9459 -1.6381 0.8898 39 1 8.0848 -0.3829 0.8877 40 1 8.0837 -0.3844 -0.8923 41 1 10.3165 -1.6034 -0.0079 42 1 10.9595 -5.2226 -1.4532 43 1 9.4933 -4.3083 -1.8796 44 1 11.0944 -3.5476 -2.0408 45 1 12.6637 -6.7073 0.3338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194747085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:26 Heat of formation + Delta-G solvation = -89.451050 kcal Electronic energy + Delta-G solvation = -26447.390802 eV Core-core repulsion = 22429.795569 eV Total energy + Delta-G solvation = -4017.595233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64923 -40.54965 -39.57866 -38.63415 -37.03569 -36.73135 -34.72506 -34.24525 -31.67907 -31.41011 -30.83152 -28.27357 -27.99900 -27.30037 -24.59777 -24.09975 -22.93314 -21.98141 -21.02276 -20.38984 -19.30025 -18.65552 -17.79035 -17.52634 -17.43349 -17.13095 -17.07479 -16.65294 -16.04711 -15.93584 -15.67370 -15.26633 -14.98759 -14.78982 -14.68422 -14.53052 -14.44640 -14.23669 -13.68397 -13.50535 -13.36848 -13.21429 -13.17100 -12.86188 -12.80918 -12.67771 -12.65679 -12.28716 -12.26228 -12.20055 -12.12676 -11.94380 -11.90399 -11.47035 -11.08621 -10.68361 -10.52731 -9.84251 -9.68386 -8.89270 -8.14898 -6.32656 -0.24980 0.28618 1.47122 1.49096 1.56885 1.59395 1.88428 1.92547 2.05284 2.34732 2.40479 2.78587 2.81041 2.85612 3.15537 3.73083 3.87226 3.97394 4.03535 4.05264 4.11638 4.19984 4.41200 4.43225 4.47443 4.52028 4.57005 4.64843 4.74181 4.76141 4.82688 4.86766 4.95433 5.12356 5.14149 5.16838 5.24463 5.33428 5.47424 5.51659 5.65434 5.73653 5.95301 6.11323 6.13631 6.43039 6.58217 6.76266 7.05189 7.36007 7.66579 8.91145 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.001666 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.533067 B =16802.104808 C =17588.944329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.077 3.923 4 C -0.120 4.120 5 C -0.045 4.045 6 C 0.285 3.715 7 N -0.466 5.466 8 C -0.048 4.048 9 C -0.172 4.172 10 C 0.123 3.877 11 O -0.324 6.324 12 C 0.059 3.941 13 C -0.100 4.100 14 C -0.120 4.120 15 C 0.491 3.509 16 O -0.609 6.609 17 N -0.706 5.706 18 C 0.267 3.733 19 H -0.006 1.006 20 C -0.133 4.133 21 C -0.546 4.546 22 H 0.076 0.924 23 C 0.012 3.988 24 N -0.919 5.919 25 Si 0.973 3.027 26 H -0.270 1.270 27 H -0.289 1.289 28 H -0.263 1.263 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.175 0.825 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.408 0.592 42 H 0.063 0.937 43 H 0.010 0.990 44 H 0.042 0.958 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.554 20.999 -1.092 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.031 3.969 4 C -0.141 4.141 5 C -0.049 4.049 6 C -0.029 4.029 7 N -0.143 5.143 8 C -0.069 4.069 9 C -0.190 4.190 10 C 0.076 3.924 11 O -0.237 6.237 12 C -0.015 4.015 13 C -0.138 4.138 14 C -0.160 4.160 15 C 0.279 3.721 16 O -0.491 6.491 17 N -0.356 5.356 18 C 0.163 3.837 19 H 0.012 0.988 20 C -0.192 4.192 21 C -0.584 4.584 22 H 0.094 0.906 23 C -0.188 4.188 24 N -0.558 5.558 25 Si 0.798 3.202 26 H -0.195 1.195 27 H -0.215 1.215 28 H -0.187 1.187 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.193 0.807 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.243 0.757 42 H 0.082 0.918 43 H 0.030 0.970 44 H 0.061 0.939 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.892 21.169 -1.112 28.395 hybrid contribution 0.969 -0.694 0.298 1.229 sum -17.923 20.475 -0.814 27.224 Atomic orbital electron populations 1.23376 0.76553 1.05551 1.02460 1.86224 1.23211 1.25861 1.89131 1.18255 0.89538 0.85507 1.03558 1.21086 1.01047 0.89253 1.02738 1.15654 0.92174 0.85978 1.11051 1.25708 0.92488 0.92510 0.92192 1.81305 1.09869 1.12014 1.11087 1.21174 0.90623 0.99923 0.95178 1.21340 1.02456 0.89199 1.06026 1.18924 0.88563 0.86948 0.98001 1.86157 1.20581 1.29214 1.87750 1.23058 0.76406 0.97821 1.04229 1.21108 0.93412 0.96212 1.03088 1.21514 0.94118 0.92797 1.07540 1.21568 0.82522 0.92741 0.75291 1.90656 1.63857 1.41719 1.52885 1.46273 1.06293 1.10339 1.72657 1.18314 0.91789 0.80497 0.93076 0.98768 1.21889 0.97268 1.02412 0.97630 1.21545 0.99543 0.95800 1.41517 0.90577 1.25832 1.02724 0.94718 0.95522 1.70060 1.38768 0.99915 1.47013 0.85384 0.78646 0.77217 0.78988 1.19533 1.21461 1.18748 0.87041 0.91302 0.91275 0.82435 0.81866 0.80729 0.88817 0.88720 0.92489 0.92613 0.85568 0.85361 0.75693 0.91788 0.97048 0.93910 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -6.33 10.27 -79.59 -0.82 -7.15 16 3 C 0.08 1.29 6.69 22.53 0.15 1.44 16 4 C -0.12 -1.46 8.74 22.62 0.20 -1.26 16 5 C -0.04 -0.52 5.74 -21.31 -0.12 -0.64 16 6 C 0.29 4.35 15.33 88.33 1.35 5.71 16 7 N -0.47 -9.59 18.54 19.00 0.35 -9.24 16 8 C -0.05 -0.40 9.74 22.53 0.22 -0.19 16 9 C -0.17 -1.64 9.01 22.31 0.20 -1.43 16 10 C 0.12 2.02 6.71 22.68 0.15 2.18 16 11 O -0.32 -6.68 9.91 -77.76 -0.77 -7.45 16 12 C 0.06 0.84 4.74 71.98 0.34 1.18 16 13 C -0.10 -2.24 4.87 30.59 0.15 -2.10 16 14 C -0.12 -2.47 5.70 29.85 0.17 -2.30 16 15 C 0.49 17.95 7.79 87.66 0.68 18.64 16 16 O -0.61 -29.20 15.65 -3.04 -0.05 -29.25 16 17 N -0.71 -27.37 5.07 -446.09 -2.26 -29.63 16 18 C 0.27 13.64 2.56 44.24 0.11 13.75 16 19 H -0.01 -0.34 7.58 -2.38 -0.02 -0.36 16 20 C -0.13 -6.69 9.26 71.98 0.67 -6.02 16 21 C -0.55 -28.24 8.73 25.60 0.22 -28.02 16 22 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 23 C 0.01 0.63 5.30 84.65 0.45 1.08 16 24 N -0.92 -52.58 11.32 21.45 0.24 -52.34 16 25 Si 0.97 41.21 29.54 68.60 2.03 43.23 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 28 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 29 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 31 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 32 H 0.16 1.31 6.28 -2.91 -0.02 1.29 16 33 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 34 H 0.18 0.66 6.27 -2.91 -0.02 0.64 16 35 H 0.09 0.84 7.64 -2.39 -0.02 0.82 16 36 H 0.09 0.82 7.67 -2.39 -0.02 0.81 16 37 H 0.06 1.55 8.10 -2.38 -0.02 1.53 16 38 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 39 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.41 12.55 8.54 -92.71 -0.79 11.76 16 42 H 0.06 3.55 6.07 -2.39 -0.01 3.53 16 43 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 44 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 45 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -78.38 388.72 5.02 -73.36 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.23 Total: 15.20 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 6.06 Total: 3.26 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -1.67 Total: -91.21 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.64 Total: -43.84 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -78.38 5.02 -73.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194747085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.091 kcal (2) G-P(sol) polarization free energy of solvation -78.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds