Wall clock time and date at job start Tue Mar 31 2020 17:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.74051 * 2 1 4 4 O 1.43168 * 109.74711 * 239.42693 * 2 1 3 5 5 C 1.36110 * 116.74040 * 194.16101 * 4 2 1 6 6 C 1.38705 * 119.39777 * 196.97565 * 5 4 2 7 7 C 1.38190 * 120.06696 * 180.32395 * 6 5 4 8 8 C 1.38251 * 120.11491 * 0.02562 * 7 6 5 9 9 C 1.38196 * 120.11243 * 359.95609 * 8 7 6 10 10 C 1.38704 * 120.06843 * 359.97438 * 9 8 7 11 11 O 1.36098 * 119.40117 * 180.13489 * 10 9 8 12 12 C 1.43178 * 116.70772 * 197.25544 * 11 10 9 13 13 H 1.08997 * 109.71029 * 73.50077 * 12 11 10 14 14 C 1.50705 * 109.70893 * 194.08476 * 12 11 10 15 15 O 1.21273 * 119.99946 * 23.94541 * 14 12 11 16 16 N 1.34777 * 119.99436 * 203.94436 * 14 12 11 17 17 C 1.46966 * 120.59664 * 5.00275 * 16 14 12 18 18 C 1.53819 * 108.39708 * 124.75747 * 17 16 14 19 19 N 1.46968 * 108.57842 * 49.63371 * 18 17 16 20 20 C 1.36937 * 120.58759 * 124.62140 * 19 18 17 21 21 H 1.08002 * 119.99892 * 206.90366 * 20 19 18 22 22 C 1.38814 * 120.00286 * 26.90797 * 20 19 18 23 23 N 1.31615 * 120.00037 * 216.80974 * 22 20 19 24 24 Si 1.86804 * 119.99862 * 36.80946 * 22 20 19 25 25 H 1.48499 * 109.46972 * 94.34337 * 24 22 20 26 26 H 1.48491 * 109.47288 * 214.34454 * 24 22 20 27 27 H 1.48498 * 109.46956 * 334.34755 * 24 22 20 28 28 C 1.46957 * 118.81570 * 304.65305 * 19 18 17 29 29 C 1.46969 * 120.59090 * 185.28184 * 16 14 12 30 30 H 1.09001 * 109.46999 * 301.05359 * 1 2 3 31 31 H 1.08998 * 109.47043 * 61.05452 * 1 2 3 32 32 H 1.09001 * 109.47341 * 181.05559 * 1 2 3 33 33 H 1.08004 * 119.95901 * 0.34333 * 6 5 4 34 34 H 1.08003 * 119.94198 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.94269 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.96687 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.61112 * 244.53946 * 17 16 14 38 38 H 1.08997 * 109.60927 * 5.05784 * 17 16 14 39 39 H 1.09001 * 109.74268 * 289.84973 * 18 17 16 40 40 H 1.08992 * 109.67597 * 169.38547 * 18 17 16 41 41 H 0.97009 * 119.99718 * 179.97438 * 23 22 20 42 42 H 1.09002 * 109.60487 * 295.47812 * 28 19 18 43 43 H 1.08997 * 109.61014 * 174.96726 * 28 19 18 44 44 H 1.08996 * 109.60637 * 354.95228 * 29 16 14 45 45 H 1.08998 * 109.60897 * 115.28885 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 8 2.0138 -0.6854 -1.1602 5 6 3.3300 -1.0321 -1.1623 6 6 3.9438 -1.3673 -2.3601 7 6 5.2777 -1.7279 -2.3774 8 6 6.0039 -1.7561 -1.2013 9 6 5.3986 -1.4228 -0.0045 10 6 4.0604 -1.0586 0.0197 11 8 3.4787 -0.7303 1.2055 12 6 2.0474 -0.7357 1.2434 13 1 1.6835 -1.7632 1.2401 14 6 1.5692 -0.0312 2.4868 15 8 2.2800 0.7865 3.0317 16 7 0.3517 -0.3101 2.9932 17 6 -0.4753 -1.3753 2.4091 18 6 -0.8510 -2.3652 3.5249 19 7 -1.3778 -1.6053 4.6672 20 6 -2.6152 -1.8879 5.1811 21 1 -3.1792 -1.1174 5.6858 22 6 -3.1447 -3.1647 5.0535 23 7 -4.4341 -3.3244 4.8435 24 14 -2.0271 -4.6563 5.1798 25 1 -2.0329 -5.1623 6.5759 26 1 -2.5157 -5.7197 4.2658 27 1 -0.6443 -4.2723 4.7982 28 6 -0.5531 -0.5363 5.2477 29 6 -0.1751 0.4498 4.1356 30 1 -0.3633 0.5301 0.8804 31 1 -0.3633 0.4974 -0.8993 32 1 -0.3634 -1.0275 0.0189 33 1 3.3786 -1.3462 -3.2802 34 1 5.7535 -1.9890 -3.3112 35 1 7.0462 -2.0387 -1.2180 36 1 5.9680 -1.4460 0.9129 37 1 -1.3794 -0.9429 1.9803 38 1 0.0891 -1.8929 1.6336 39 1 0.0322 -2.9245 3.8336 40 1 -1.6126 -3.0553 3.1621 41 1 -4.8041 -4.2167 4.7539 42 1 0.3513 -0.9654 5.6791 43 1 -1.1191 -0.0165 6.0207 44 1 0.5876 1.1378 4.5003 45 1 -1.0565 1.0115 3.8261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195130724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:07 Heat of formation + Delta-G solvation = -24.258499 kcal Electronic energy + Delta-G solvation = -29716.265212 eV Core-core repulsion = 25701.496940 eV Total energy + Delta-G solvation = -4014.768272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.78596 -39.91846 -37.92168 -37.61445 -36.93903 -34.41726 -33.16410 -31.59848 -30.99299 -30.67185 -29.30185 -28.18332 -26.77077 -24.22409 -23.64730 -23.29623 -22.88008 -21.64788 -20.46720 -19.25077 -18.87164 -18.21435 -17.25451 -16.74659 -16.23979 -15.95290 -15.80814 -15.11896 -15.08044 -14.85822 -14.72257 -14.46484 -14.29940 -14.05093 -13.85565 -13.79096 -13.27068 -13.00375 -12.93330 -12.64859 -12.53704 -12.25333 -12.12951 -12.09047 -11.96111 -11.56317 -11.25759 -11.05587 -10.90916 -10.68474 -10.55963 -10.39593 -10.27127 -9.65992 -9.57319 -8.88881 -8.87024 -8.37699 -8.28265 -7.13111 -6.18525 -3.38897 1.06437 1.08024 2.23434 2.57638 2.80597 3.28630 3.37464 3.42026 3.47761 3.51589 3.91704 4.24474 4.35504 4.39323 4.44865 4.64356 4.73263 4.76338 4.97224 5.01036 5.11405 5.13211 5.17435 5.31775 5.38208 5.45788 5.50755 5.61527 5.65894 5.72232 5.84895 5.89272 5.92022 5.95092 5.98195 6.07332 6.22542 6.38193 6.39420 6.47441 6.62509 6.65841 6.75288 7.18711 7.44436 7.77839 8.11284 8.15756 8.78292 9.57110 9.96251 10.95608 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.003372 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.695212 B = 8302.470166 C = 8655.797397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.068 3.932 3 H 0.091 0.909 4 O -0.299 6.299 5 C 0.049 3.951 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.112 4.112 10 C 0.054 3.946 11 O -0.282 6.282 12 C 0.036 3.964 13 H 0.109 0.891 14 C 0.525 3.475 15 O -0.525 6.525 16 N -0.590 5.590 17 C 0.076 3.924 18 C 0.130 3.870 19 N -0.598 5.598 20 C -0.278 4.278 21 H 0.084 0.916 22 C 0.042 3.958 23 N -0.876 5.876 24 Si 0.833 3.167 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.258 1.258 28 C 0.132 3.868 29 C 0.097 3.903 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.264 0.736 42 H 0.028 0.972 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.091 4.580 -14.321 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 H 0.109 0.891 4 O -0.214 6.214 5 C 0.004 3.996 6 C -0.132 4.132 7 C -0.137 4.137 8 C -0.135 4.135 9 C -0.131 4.131 10 C 0.009 3.991 11 O -0.195 6.195 12 C -0.024 4.024 13 H 0.126 0.874 14 C 0.310 3.690 15 O -0.401 6.401 16 N -0.323 5.323 17 C -0.049 4.049 18 C 0.003 3.997 19 N -0.322 5.322 20 C -0.405 4.405 21 H 0.101 0.899 22 C -0.160 4.160 23 N -0.516 5.516 24 Si 0.660 3.340 25 H -0.218 1.218 26 H -0.220 1.220 27 H -0.183 1.183 28 C 0.005 3.995 29 C -0.026 4.026 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.209 4.943 -13.972 21.236 hybrid contribution 0.381 -1.166 0.252 1.253 sum 15.590 3.777 -13.720 21.108 Atomic orbital electron populations 1.22220 0.89966 1.04752 1.04533 1.22996 0.97429 0.95645 0.82851 0.89131 1.86338 1.21489 1.73160 1.40417 1.18986 0.84444 1.02624 0.93538 1.20446 0.94766 1.02460 0.95541 1.20912 0.93182 1.00985 0.98641 1.20917 1.00196 1.00818 0.91535 1.20477 0.91891 1.01085 0.99630 1.19049 0.94034 1.02105 0.83933 1.86377 1.18858 1.84747 1.29516 1.23123 0.81210 1.02088 0.96023 0.87409 1.19450 0.81994 0.83097 0.84440 1.90704 1.54225 1.34719 1.60480 1.47973 1.15859 1.35823 1.32686 1.23037 0.94858 0.89532 0.97424 1.21830 0.97975 0.92718 0.87203 1.44282 1.17494 1.38613 1.31761 1.18758 0.89967 0.95177 1.36577 0.89851 1.25220 0.94907 0.97264 0.98640 1.70106 1.12767 1.22877 1.45833 0.87647 0.83426 0.84698 0.78257 1.21826 1.21961 1.18266 1.21354 0.94627 0.89950 0.93524 1.22314 0.98741 0.94845 0.86741 0.89020 0.90241 0.90113 0.84755 0.85076 0.85030 0.84664 0.89826 0.90750 0.94828 0.90155 0.92605 0.95402 0.90410 0.89435 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 7.74 37.16 0.29 -1.37 16 2 C 0.07 0.85 3.17 -26.49 -0.08 0.77 16 3 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 4 O -0.30 -3.88 10.07 -32.88 -0.33 -4.22 16 5 C 0.05 0.63 6.49 -39.14 -0.25 0.38 16 6 C -0.11 -1.18 9.96 -39.43 -0.39 -1.57 16 7 C -0.12 -1.03 10.04 -39.59 -0.40 -1.43 16 8 C -0.12 -1.05 10.04 -39.59 -0.40 -1.45 16 9 C -0.11 -1.29 9.96 -39.42 -0.39 -1.68 16 10 C 0.05 0.75 6.49 -39.14 -0.25 0.49 16 11 O -0.28 -4.48 9.73 -46.40 -0.45 -4.93 16 12 C 0.04 0.52 2.54 -27.64 -0.07 0.45 16 13 H 0.11 1.46 6.09 -51.93 -0.32 1.14 16 14 C 0.53 8.61 6.34 -10.98 -0.07 8.54 16 15 O -0.53 -10.23 16.09 -12.90 -0.21 -10.44 16 16 N -0.59 -9.32 2.28 -172.21 -0.39 -9.72 16 17 C 0.08 1.15 4.21 -3.36 -0.01 1.14 16 18 C 0.13 2.54 4.56 -3.36 -0.02 2.53 16 19 N -0.60 -13.08 2.70 -171.77 -0.46 -13.54 16 20 C -0.28 -7.17 9.84 -15.06 -0.15 -7.32 16 21 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 22 C 0.04 1.12 4.81 -17.43 -0.08 1.03 16 23 N -0.88 -25.04 13.97 55.49 0.78 -24.27 16 24 Si 0.83 20.10 26.49 -169.99 -4.50 15.60 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.26 -5.92 4.93 56.52 0.28 -5.64 16 28 C 0.13 2.45 6.67 -3.60 -0.02 2.42 16 29 C 0.10 1.55 6.60 -3.60 -0.02 1.53 16 30 H 0.09 1.02 5.82 -51.93 -0.30 0.72 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.81 6.30 -51.93 -0.33 0.49 16 33 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 34 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 35 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 36 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.08 1.23 7.28 -51.93 -0.38 0.85 16 38 H 0.07 0.95 4.14 -51.93 -0.22 0.74 16 39 H 0.03 0.68 6.75 -51.93 -0.35 0.33 16 40 H 0.08 1.68 5.62 -51.93 -0.29 1.39 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.39 7.93 -51.93 -0.41 0.98 16 44 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -31.72 348.04 -8.68 -40.40 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.02 Total: 1.40 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.33 Total: 4.47 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.08 Total: -47.53 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.99 Total: -19.58 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.50 Total: 15.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.72 -8.68 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195130724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.145 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds