Wall clock time and date at job start Tue Mar 31 2020 17:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.74051 * 2 1 4 4 O 1.43168 * 109.74711 * 239.42693 * 2 1 3 5 5 C 1.36110 * 116.74040 * 194.16101 * 4 2 1 6 6 C 1.38705 * 119.39777 * 196.97565 * 5 4 2 7 7 C 1.38190 * 120.06696 * 180.32395 * 6 5 4 8 8 C 1.38251 * 120.11491 * 0.02562 * 7 6 5 9 9 C 1.38196 * 120.11243 * 359.95609 * 8 7 6 10 10 C 1.38704 * 120.06843 * 359.97438 * 9 8 7 11 11 O 1.36098 * 119.40117 * 180.13489 * 10 9 8 12 12 C 1.43178 * 116.70772 * 197.25544 * 11 10 9 13 13 H 1.08997 * 109.71029 * 73.50077 * 12 11 10 14 14 C 1.50705 * 109.70893 * 194.08476 * 12 11 10 15 15 O 1.21273 * 119.99946 * 23.94541 * 14 12 11 16 16 N 1.34777 * 119.99436 * 203.94436 * 14 12 11 17 17 C 1.46966 * 120.59664 * 5.00275 * 16 14 12 18 18 C 1.53819 * 108.39708 * 124.75747 * 17 16 14 19 19 N 1.46968 * 108.57842 * 49.63371 * 18 17 16 20 20 C 1.36937 * 120.58759 * 124.62140 * 19 18 17 21 21 H 1.08002 * 119.99892 * 206.90366 * 20 19 18 22 22 C 1.38814 * 120.00286 * 26.90797 * 20 19 18 23 23 N 1.31615 * 120.00037 * 216.80974 * 22 20 19 24 24 Si 1.86804 * 119.99862 * 36.80946 * 22 20 19 25 25 H 1.48499 * 109.46972 * 94.34337 * 24 22 20 26 26 H 1.48491 * 109.47288 * 214.34454 * 24 22 20 27 27 H 1.48498 * 109.46956 * 334.34755 * 24 22 20 28 28 C 1.46957 * 118.81570 * 304.65305 * 19 18 17 29 29 C 1.46969 * 120.59090 * 185.28184 * 16 14 12 30 30 H 1.09001 * 109.46999 * 301.05359 * 1 2 3 31 31 H 1.08998 * 109.47043 * 61.05452 * 1 2 3 32 32 H 1.09001 * 109.47341 * 181.05559 * 1 2 3 33 33 H 1.08004 * 119.95901 * 0.34333 * 6 5 4 34 34 H 1.08003 * 119.94198 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.94269 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.96687 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.61112 * 244.53946 * 17 16 14 38 38 H 1.08997 * 109.60927 * 5.05784 * 17 16 14 39 39 H 1.09001 * 109.74268 * 289.84973 * 18 17 16 40 40 H 1.08992 * 109.67597 * 169.38547 * 18 17 16 41 41 H 0.97009 * 119.99718 * 179.97438 * 23 22 20 42 42 H 1.09002 * 109.60487 * 295.47812 * 28 19 18 43 43 H 1.08997 * 109.61014 * 174.96726 * 28 19 18 44 44 H 1.08996 * 109.60637 * 354.95228 * 29 16 14 45 45 H 1.08998 * 109.60897 * 115.28885 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 8 2.0138 -0.6854 -1.1602 5 6 3.3300 -1.0321 -1.1623 6 6 3.9438 -1.3673 -2.3601 7 6 5.2777 -1.7279 -2.3774 8 6 6.0039 -1.7561 -1.2013 9 6 5.3986 -1.4228 -0.0045 10 6 4.0604 -1.0586 0.0197 11 8 3.4787 -0.7303 1.2055 12 6 2.0474 -0.7357 1.2434 13 1 1.6835 -1.7632 1.2401 14 6 1.5692 -0.0312 2.4868 15 8 2.2800 0.7865 3.0317 16 7 0.3517 -0.3101 2.9932 17 6 -0.4753 -1.3753 2.4091 18 6 -0.8510 -2.3652 3.5249 19 7 -1.3778 -1.6053 4.6672 20 6 -2.6152 -1.8879 5.1811 21 1 -3.1792 -1.1174 5.6858 22 6 -3.1447 -3.1647 5.0535 23 7 -4.4341 -3.3244 4.8435 24 14 -2.0271 -4.6563 5.1798 25 1 -2.0329 -5.1623 6.5759 26 1 -2.5157 -5.7197 4.2658 27 1 -0.6443 -4.2723 4.7982 28 6 -0.5531 -0.5363 5.2477 29 6 -0.1751 0.4498 4.1356 30 1 -0.3633 0.5301 0.8804 31 1 -0.3633 0.4974 -0.8993 32 1 -0.3634 -1.0275 0.0189 33 1 3.3786 -1.3462 -3.2802 34 1 5.7535 -1.9890 -3.3112 35 1 7.0462 -2.0387 -1.2180 36 1 5.9680 -1.4460 0.9129 37 1 -1.3794 -0.9429 1.9803 38 1 0.0891 -1.8929 1.6336 39 1 0.0322 -2.9245 3.8336 40 1 -1.6126 -3.0553 3.1621 41 1 -4.8041 -4.2167 4.7539 42 1 0.3513 -0.9654 5.6791 43 1 -1.1191 -0.0165 6.0207 44 1 0.5876 1.1378 4.5003 45 1 -1.0565 1.0115 3.8261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195130724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:06 Heat of formation + Delta-G solvation = -43.133423 kcal Electronic energy + Delta-G solvation = -29717.083690 eV Core-core repulsion = 25701.496940 eV Total energy + Delta-G solvation = -4015.586750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.79417 -41.14416 -38.93153 -38.71378 -38.21317 -35.93894 -34.39847 -33.34195 -32.19944 -31.70634 -30.13951 -29.48538 -28.16008 -25.45627 -25.19516 -24.49745 -23.74522 -22.91335 -21.70579 -20.43629 -19.97251 -19.47084 -18.46407 -18.05465 -17.59867 -17.05997 -17.01920 -16.60031 -16.12298 -16.05212 -16.00646 -15.71468 -15.46585 -15.35006 -14.96663 -14.86482 -14.77449 -14.27253 -14.25167 -14.12491 -13.70483 -13.55772 -13.30778 -12.97198 -12.84110 -12.79122 -12.58254 -12.38113 -12.34252 -12.22326 -11.97010 -11.92518 -11.52455 -11.44311 -10.95825 -10.69701 -10.01017 -9.69148 -9.16308 -8.93104 -8.24554 -5.41064 0.25751 0.27088 1.03461 1.33165 1.39241 1.47167 1.51807 1.87670 2.27412 2.43078 2.70305 2.88653 2.92776 3.07673 3.29248 3.42041 3.48491 3.75291 3.94810 4.01534 4.05709 4.10527 4.24444 4.26607 4.34354 4.38848 4.44365 4.49241 4.53920 4.60205 4.66734 4.70980 4.82608 4.86011 4.95181 5.04123 5.13276 5.15227 5.19697 5.33237 5.48746 5.67359 5.77784 5.83828 6.08433 6.17071 6.28008 6.81273 6.87652 7.59967 8.02475 8.93121 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.003372 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.695212 B = 8302.470166 C = 8655.797397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.073 3.927 3 H 0.081 0.919 4 O -0.303 6.303 5 C 0.026 3.974 6 C -0.118 4.118 7 C -0.108 4.108 8 C -0.109 4.109 9 C -0.126 4.126 10 C 0.021 3.979 11 O -0.309 6.309 12 C 0.037 3.963 13 H 0.117 0.883 14 C 0.529 3.471 15 O -0.559 6.559 16 N -0.587 5.587 17 C 0.088 3.912 18 C 0.123 3.877 19 N -0.610 5.610 20 C -0.263 4.263 21 H 0.057 0.943 22 C -0.005 4.005 23 N -0.922 5.922 24 Si 0.890 3.110 25 H -0.305 1.305 26 H -0.293 1.293 27 H -0.240 1.240 28 C 0.131 3.869 29 C 0.105 3.895 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.263 0.737 42 H 0.025 0.975 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.255 4.174 -16.858 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.016 3.984 3 H 0.099 0.901 4 O -0.218 6.218 5 C -0.019 4.019 6 C -0.136 4.136 7 C -0.126 4.126 8 C -0.127 4.127 9 C -0.145 4.145 10 C -0.024 4.024 11 O -0.224 6.224 12 C -0.023 4.023 13 H 0.134 0.866 14 C 0.316 3.684 15 O -0.438 6.438 16 N -0.320 5.320 17 C -0.035 4.035 18 C -0.003 4.003 19 N -0.334 5.334 20 C -0.391 4.391 21 H 0.074 0.926 22 C -0.203 4.203 23 N -0.565 5.565 24 Si 0.717 3.283 25 H -0.234 1.234 26 H -0.220 1.220 27 H -0.164 1.164 28 C 0.006 3.994 29 C -0.018 4.018 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.170 0.830 34 H 0.186 0.814 35 H 0.182 0.818 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.417 4.538 -16.533 24.439 hybrid contribution -0.169 -0.981 1.009 1.418 sum 17.248 3.556 -15.524 23.476 Atomic orbital electron populations 1.22219 0.88391 1.05347 1.05114 1.22966 0.98458 0.94862 0.82096 0.90066 1.86320 1.21889 1.73348 1.40213 1.19315 0.84477 1.03870 0.94215 1.20824 0.95719 1.01778 0.95285 1.21393 0.92406 0.98819 0.99984 1.21344 1.01651 0.99068 0.90604 1.20765 0.91302 1.01434 1.01002 1.19409 0.95076 1.04263 0.83613 1.86312 1.19337 1.85565 1.31139 1.23108 0.81277 1.02302 0.95570 0.86610 1.19765 0.81442 0.82500 0.84686 1.90683 1.55096 1.36325 1.61683 1.47978 1.15814 1.35720 1.32507 1.22941 0.95798 0.88574 0.96229 1.21871 0.97213 0.93525 0.87703 1.44394 1.16864 1.39374 1.32781 1.18701 0.90995 0.94364 1.35087 0.92553 1.25641 0.95724 0.99378 0.99603 1.70173 1.14406 1.23178 1.48725 0.86743 0.82716 0.81718 0.77087 1.23407 1.21976 1.16405 1.21441 0.93940 0.89524 0.94539 1.22166 0.99306 0.94162 0.86153 0.89568 0.88596 0.89369 0.82991 0.81420 0.81801 0.84485 0.88656 0.87825 0.95123 0.91417 0.92740 0.95658 0.90155 0.88952 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 7.74 71.98 0.56 -2.37 16 2 C 0.07 1.76 3.17 30.75 0.10 1.86 16 3 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 4 O -0.30 -7.42 10.07 -82.57 -0.83 -8.26 16 5 C 0.03 0.63 6.49 22.56 0.15 0.78 16 6 C -0.12 -2.12 9.96 22.37 0.22 -1.89 16 7 C -0.11 -1.45 10.04 22.26 0.22 -1.23 16 8 C -0.11 -1.61 10.04 22.26 0.22 -1.39 16 9 C -0.13 -2.73 9.96 22.37 0.22 -2.51 16 10 C 0.02 0.56 6.49 22.56 0.15 0.71 16 11 O -0.31 -9.83 9.73 -69.47 -0.68 -10.51 16 12 C 0.04 1.05 2.54 30.00 0.08 1.12 16 13 H 0.12 2.96 6.09 -2.39 -0.01 2.95 16 14 C 0.53 16.95 6.34 87.66 0.56 17.50 16 15 O -0.56 -21.74 16.09 14.65 0.24 -21.51 16 16 N -0.59 -17.76 2.28 -817.15 -1.86 -19.62 16 17 C 0.09 2.51 4.21 86.57 0.36 2.87 16 18 C 0.12 4.65 4.56 86.57 0.40 5.04 16 19 N -0.61 -26.29 2.70 -697.35 -1.88 -28.18 16 20 C -0.26 -13.68 9.84 84.03 0.83 -12.86 16 21 H 0.06 3.19 8.06 -2.91 -0.02 3.17 16 22 C 0.00 -0.27 4.81 84.86 0.41 0.14 16 23 N -0.92 -53.72 13.97 21.65 0.30 -53.42 16 24 Si 0.89 41.94 26.49 68.60 1.82 43.76 16 25 H -0.31 -15.04 7.11 99.48 0.71 -14.34 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.24 -10.49 4.93 99.48 0.49 -10.00 16 28 C 0.13 4.78 6.67 86.42 0.58 5.35 16 29 C 0.11 3.26 6.60 86.41 0.57 3.83 16 30 H 0.09 1.75 5.82 -2.39 -0.01 1.73 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.53 6.30 -2.39 -0.02 1.52 16 33 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.10 2.57 7.28 -2.39 -0.02 2.55 16 38 H 0.10 2.39 4.14 -2.39 -0.01 2.38 16 39 H 0.03 1.19 6.75 -2.39 -0.02 1.17 16 40 H 0.07 2.75 5.62 -2.39 -0.01 2.74 16 41 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 42 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 44 H 0.09 2.83 6.99 -2.39 -0.02 2.81 16 45 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -69.90 348.04 3.52 -66.38 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.80 Total: 14.37 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 5.61 Total: 16.97 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -3.44 Total: -101.21 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -1.27 Total: -40.27 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.82 Total: 43.76 kcal Total: -69.90 3.52 -66.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195130724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.246 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds