Wall clock time and date at job start Tue Mar 31 2020 17:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.74054 * 2 1 4 4 O 1.43175 * 109.70454 * 120.60180 * 2 1 3 5 5 C 1.36111 * 116.71260 * 165.86459 * 4 2 1 6 6 C 1.38705 * 119.39763 * 162.82205 * 5 4 2 7 7 C 1.38196 * 120.06537 * 179.83518 * 6 5 4 8 8 C 1.38253 * 120.11404 * 359.97232 * 7 6 5 9 9 C 1.38194 * 120.11222 * 0.11309 * 8 7 6 10 10 C 1.38704 * 120.06434 * 359.94288 * 9 8 7 11 11 O 1.36133 * 119.37263 * 179.76609 * 10 9 8 12 12 C 1.43174 * 116.67503 * 162.90855 * 11 10 9 13 13 H 1.09001 * 109.71218 * 286.48707 * 12 11 10 14 14 C 1.50705 * 109.70991 * 165.90097 * 12 11 10 15 15 O 1.21284 * 119.99625 * 330.09353 * 14 12 11 16 16 N 1.34775 * 120.00440 * 150.08651 * 14 12 11 17 17 C 1.46956 * 120.59433 * 174.99385 * 16 14 12 18 18 C 1.53376 * 108.63718 * 235.20342 * 17 16 14 19 19 N 1.46966 * 108.63663 * 310.58183 * 18 17 16 20 20 C 1.36928 * 120.59537 * 235.19877 * 19 18 17 21 21 H 1.08002 * 119.99776 * 30.26022 * 20 19 18 22 22 C 1.38813 * 120.00475 * 210.26333 * 20 19 18 23 23 N 1.31611 * 120.00266 * 201.27786 * 22 20 19 24 24 Si 1.86799 * 119.99462 * 21.27540 * 22 20 19 25 25 H 1.48509 * 109.47105 * 264.81114 * 24 22 20 26 26 H 1.48496 * 109.47789 * 24.81295 * 24 22 20 27 27 H 1.48499 * 109.46984 * 144.81379 * 24 22 20 28 28 C 1.46966 * 118.80954 * 55.47384 * 19 18 17 29 29 C 1.46966 * 120.59132 * 354.97698 * 16 14 12 30 30 H 1.08999 * 109.47092 * 176.01378 * 1 2 3 31 31 H 1.08996 * 109.47217 * 296.01544 * 1 2 3 32 32 H 1.09004 * 109.47142 * 56.01474 * 1 2 3 33 33 H 1.08004 * 119.97021 * 359.83864 * 6 5 4 34 34 H 1.08000 * 119.94563 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.94367 * 180.08419 * 8 7 6 36 36 H 1.08000 * 119.96750 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.60755 * 115.46550 * 17 16 14 38 38 H 1.08995 * 109.61284 * 354.95310 * 17 16 14 39 39 H 1.09000 * 109.61152 * 190.82945 * 18 17 16 40 40 H 1.09007 * 109.60638 * 70.32341 * 18 17 16 41 41 H 0.97006 * 120.00054 * 179.97438 * 23 22 20 42 42 H 1.08997 * 109.61062 * 64.26461 * 28 19 18 43 43 H 1.08999 * 109.60900 * 184.77466 * 28 19 18 44 44 H 1.08996 * 109.61143 * 244.54098 * 29 16 14 45 45 H 1.09001 * 109.60857 * 5.05081 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0127 -0.6862 1.1602 5 6 3.3290 -1.0326 1.1627 6 6 3.9434 -1.3646 2.3611 7 6 5.2783 -1.7217 2.3790 8 6 6.0048 -1.7497 1.2031 9 6 5.3991 -1.4183 0.0060 10 6 4.0600 -1.0579 -0.0189 11 8 3.4788 -0.7295 -1.2054 12 6 2.0476 -0.7356 -1.2435 13 1 1.6841 -1.7632 -1.2406 14 6 1.5692 -0.0308 -2.4867 15 8 2.2312 0.8635 -2.9695 16 7 0.4060 -0.3943 -3.0622 17 6 -0.1272 0.3543 -4.2089 18 6 -1.5520 0.8133 -3.8749 19 7 -2.3098 -0.3390 -3.3670 20 6 -3.4916 -0.7083 -3.9516 21 1 -3.6518 -0.5308 -5.0048 22 6 -4.4840 -1.3109 -3.1906 23 7 -5.4155 -2.0329 -3.7764 24 14 -4.4971 -1.0969 -1.3349 25 1 -3.8093 -2.2492 -0.6989 26 1 -3.7920 0.1598 -0.9764 27 1 -5.9006 -1.0314 -0.8542 28 6 -1.7793 -1.0841 -2.2167 29 6 -0.3517 -1.5466 -2.5543 30 1 -0.3633 -1.0252 -0.0714 31 1 -0.3633 0.4507 0.9235 32 1 -0.3634 0.5745 -0.8522 33 1 3.3780 -1.3441 3.2811 34 1 5.7549 -1.9795 3.3133 35 1 7.0475 -2.0305 1.2202 36 1 5.9690 -1.4406 -0.9112 37 1 -0.1470 -0.2892 -5.0885 38 1 0.5013 1.2235 -4.4026 39 1 -2.0322 1.1994 -4.7741 40 1 -1.5163 1.5921 -3.1131 41 1 -6.1087 -2.4542 -3.2445 42 1 -1.7593 -0.4373 -1.3396 43 1 -2.4097 -1.9514 -2.0204 44 1 -0.3875 -2.3254 -3.3160 45 1 0.1285 -1.9326 -1.6551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195130736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:12 Heat of formation + Delta-G solvation = -26.119265 kcal Electronic energy + Delta-G solvation = -29985.571722 eV Core-core repulsion = 25970.722761 eV Total energy + Delta-G solvation = -4014.848961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.79178 -39.95498 -37.91432 -37.65750 -37.00387 -34.30473 -33.28085 -31.65044 -30.99125 -30.72813 -29.28863 -28.29164 -26.69069 -24.13897 -23.64147 -23.44124 -22.89820 -21.79640 -20.35810 -19.17313 -18.98108 -18.27878 -17.28743 -16.69778 -16.36896 -15.99940 -15.66116 -15.23292 -15.06246 -14.86471 -14.82799 -14.52836 -14.37442 -14.06912 -13.95117 -13.82885 -13.28621 -12.99105 -12.80300 -12.62045 -12.44077 -12.23939 -12.17775 -12.12252 -12.03432 -11.56318 -11.30450 -11.06961 -11.04966 -10.63177 -10.53490 -10.43106 -10.21318 -9.70389 -9.66430 -8.99321 -8.87825 -8.50207 -8.28707 -7.09343 -6.11129 -3.50471 1.05803 1.07517 2.19997 2.55097 2.82984 3.16904 3.35745 3.36618 3.39502 3.50884 3.91871 4.23362 4.35827 4.36316 4.40612 4.65706 4.70859 4.75887 4.99174 5.01415 5.12290 5.15038 5.17041 5.27607 5.38952 5.40134 5.52469 5.57728 5.66815 5.70569 5.84940 5.86918 5.92315 5.92593 5.98180 6.04360 6.21832 6.28493 6.33800 6.38612 6.54830 6.62904 6.72962 7.18314 7.41385 7.78462 8.08299 8.17876 8.75166 9.53794 9.89870 11.04348 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.003611 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.131752 B = 7752.063589 C = 8664.237430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 H 0.092 0.908 4 O -0.299 6.299 5 C 0.050 3.950 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.117 4.117 9 C -0.112 4.112 10 C 0.053 3.947 11 O -0.283 6.283 12 C 0.035 3.965 13 H 0.108 0.892 14 C 0.526 3.474 15 O -0.525 6.525 16 N -0.589 5.589 17 C 0.096 3.904 18 C 0.133 3.867 19 N -0.602 5.602 20 C -0.268 4.268 21 H 0.087 0.913 22 C 0.029 3.971 23 N -0.901 5.901 24 Si 0.874 3.126 25 H -0.286 1.286 26 H -0.269 1.269 27 H -0.299 1.299 28 C 0.106 3.894 29 C 0.078 3.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.029 0.971 41 H 0.265 0.735 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.397 0.433 10.568 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.110 0.890 4 O -0.214 6.214 5 C 0.005 3.995 6 C -0.132 4.132 7 C -0.137 4.137 8 C -0.135 4.135 9 C -0.131 4.131 10 C 0.008 3.992 11 O -0.196 6.196 12 C -0.025 4.025 13 H 0.125 0.875 14 C 0.311 3.689 15 O -0.401 6.401 16 N -0.323 5.323 17 C -0.027 4.027 18 C 0.007 3.993 19 N -0.326 5.326 20 C -0.396 4.396 21 H 0.105 0.895 22 C -0.171 4.171 23 N -0.542 5.542 24 Si 0.703 3.297 25 H -0.214 1.214 26 H -0.193 1.193 27 H -0.227 1.227 28 C -0.020 4.020 29 C -0.046 4.046 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.488 0.848 10.237 21.151 hybrid contribution -0.322 -0.109 1.021 1.076 sum 18.166 0.739 11.259 21.385 Atomic orbital electron populations 1.22347 0.89824 1.04702 1.04875 1.23015 0.97416 0.95683 0.82753 0.88973 1.86361 1.21429 1.73093 1.40467 1.19000 0.84491 1.02477 0.93536 1.20459 0.94758 1.02453 0.95560 1.20916 0.93154 1.00946 0.98649 1.20911 1.00178 1.00901 0.91537 1.20462 0.91808 1.01200 0.99605 1.19043 0.94005 1.02230 0.83923 1.86370 1.18850 1.84822 1.29576 1.23157 0.81168 1.02055 0.96093 0.87473 1.19440 0.81513 0.83854 0.84071 1.90707 1.54851 1.31013 1.63569 1.47938 1.20749 1.31134 1.32449 1.22344 0.96606 0.96617 0.87168 1.21380 0.89619 0.89497 0.98832 1.44273 1.23265 1.29606 1.35430 1.18897 0.89943 1.36880 0.93834 0.89529 1.25355 0.95791 0.98296 0.97636 1.69835 1.16658 1.31983 1.35764 0.87026 0.76488 0.78556 0.87581 1.21355 1.19341 1.22696 1.22080 0.91734 0.97048 0.91173 1.22790 0.94523 0.87974 0.99363 0.90238 0.90037 0.88707 0.84746 0.85075 0.85033 0.84687 0.90869 0.89354 0.90176 0.95335 0.92543 0.94019 0.89728 0.90001 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 6.90 37.16 0.26 -1.81 16 2 C 0.07 0.93 3.17 -26.49 -0.08 0.84 16 3 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 4 O -0.30 -4.08 10.07 -32.85 -0.33 -4.41 16 5 C 0.05 0.66 6.49 -39.14 -0.25 0.40 16 6 C -0.11 -1.20 9.96 -39.42 -0.39 -1.59 16 7 C -0.12 -1.03 10.04 -39.59 -0.40 -1.42 16 8 C -0.12 -1.04 10.04 -39.59 -0.40 -1.43 16 9 C -0.11 -1.25 9.96 -39.43 -0.39 -1.65 16 10 C 0.05 0.73 6.49 -39.14 -0.25 0.48 16 11 O -0.28 -4.41 9.79 -46.09 -0.45 -4.86 16 12 C 0.04 0.51 2.52 -27.64 -0.07 0.45 16 13 H 0.11 1.41 5.93 -51.93 -0.31 1.10 16 14 C 0.53 8.62 6.11 -10.98 -0.07 8.55 16 15 O -0.53 -10.14 16.18 -12.07 -0.20 -10.33 16 16 N -0.59 -9.36 2.42 -172.22 -0.42 -9.77 16 17 C 0.10 1.54 6.58 -3.60 -0.02 1.51 16 18 C 0.13 2.39 6.67 -3.59 -0.02 2.36 16 19 N -0.60 -12.86 2.69 -171.76 -0.46 -13.32 16 20 C -0.27 -6.89 9.99 -15.06 -0.15 -7.04 16 21 H 0.09 2.40 8.06 -52.49 -0.42 1.98 16 22 C 0.03 0.79 5.19 -17.43 -0.09 0.70 16 23 N -0.90 -26.12 13.97 55.49 0.78 -25.34 16 24 Si 0.87 20.52 24.46 -169.99 -4.16 16.37 16 25 H -0.29 -6.37 6.75 56.52 0.38 -5.99 16 26 H -0.27 -6.13 6.69 56.52 0.38 -5.75 16 27 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 28 C 0.11 2.00 3.72 -3.37 -0.01 1.99 16 29 C 0.08 1.20 5.42 -3.37 -0.02 1.18 16 30 H 0.08 1.00 5.71 -51.93 -0.30 0.70 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.34 5.51 -51.93 -0.29 1.06 16 33 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.38 7.02 -51.93 -0.36 1.01 16 39 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.04 0.76 3.91 -51.93 -0.20 0.56 16 43 H 0.08 1.75 4.80 -51.93 -0.25 1.50 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.08 0.97 3.86 -51.93 -0.20 0.77 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -31.38 343.37 -8.16 -39.54 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.73 Total: 3.46 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.37 Total: 3.51 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.10 Total: -48.44 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.98 Total: -19.61 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.16 Total: 16.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.38 -8.16 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195130736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.422 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds