Wall clock time and date at job start Tue Mar 31 2020 17:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.74054 * 2 1 4 4 O 1.43175 * 109.70454 * 120.60180 * 2 1 3 5 5 C 1.36111 * 116.71260 * 165.86459 * 4 2 1 6 6 C 1.38705 * 119.39763 * 162.82205 * 5 4 2 7 7 C 1.38196 * 120.06537 * 179.83518 * 6 5 4 8 8 C 1.38253 * 120.11404 * 359.97232 * 7 6 5 9 9 C 1.38194 * 120.11222 * 0.11309 * 8 7 6 10 10 C 1.38704 * 120.06434 * 359.94288 * 9 8 7 11 11 O 1.36133 * 119.37263 * 179.76609 * 10 9 8 12 12 C 1.43174 * 116.67503 * 162.90855 * 11 10 9 13 13 H 1.09001 * 109.71218 * 286.48707 * 12 11 10 14 14 C 1.50705 * 109.70991 * 165.90097 * 12 11 10 15 15 O 1.21284 * 119.99625 * 330.09353 * 14 12 11 16 16 N 1.34775 * 120.00440 * 150.08651 * 14 12 11 17 17 C 1.46956 * 120.59433 * 174.99385 * 16 14 12 18 18 C 1.53376 * 108.63718 * 235.20342 * 17 16 14 19 19 N 1.46966 * 108.63663 * 310.58183 * 18 17 16 20 20 C 1.36928 * 120.59537 * 235.19877 * 19 18 17 21 21 H 1.08002 * 119.99776 * 30.26022 * 20 19 18 22 22 C 1.38813 * 120.00475 * 210.26333 * 20 19 18 23 23 N 1.31611 * 120.00266 * 201.27786 * 22 20 19 24 24 Si 1.86799 * 119.99462 * 21.27540 * 22 20 19 25 25 H 1.48509 * 109.47105 * 264.81114 * 24 22 20 26 26 H 1.48496 * 109.47789 * 24.81295 * 24 22 20 27 27 H 1.48499 * 109.46984 * 144.81379 * 24 22 20 28 28 C 1.46966 * 118.80954 * 55.47384 * 19 18 17 29 29 C 1.46966 * 120.59132 * 354.97698 * 16 14 12 30 30 H 1.08999 * 109.47092 * 176.01378 * 1 2 3 31 31 H 1.08996 * 109.47217 * 296.01544 * 1 2 3 32 32 H 1.09004 * 109.47142 * 56.01474 * 1 2 3 33 33 H 1.08004 * 119.97021 * 359.83864 * 6 5 4 34 34 H 1.08000 * 119.94563 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.94367 * 180.08419 * 8 7 6 36 36 H 1.08000 * 119.96750 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.60755 * 115.46550 * 17 16 14 38 38 H 1.08995 * 109.61284 * 354.95310 * 17 16 14 39 39 H 1.09000 * 109.61152 * 190.82945 * 18 17 16 40 40 H 1.09007 * 109.60638 * 70.32341 * 18 17 16 41 41 H 0.97006 * 120.00054 * 179.97438 * 23 22 20 42 42 H 1.08997 * 109.61062 * 64.26461 * 28 19 18 43 43 H 1.08999 * 109.60900 * 184.77466 * 28 19 18 44 44 H 1.08996 * 109.61143 * 244.54098 * 29 16 14 45 45 H 1.09001 * 109.60857 * 5.05081 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0127 -0.6862 1.1602 5 6 3.3290 -1.0326 1.1627 6 6 3.9434 -1.3646 2.3611 7 6 5.2783 -1.7217 2.3790 8 6 6.0048 -1.7497 1.2031 9 6 5.3991 -1.4183 0.0060 10 6 4.0600 -1.0579 -0.0189 11 8 3.4788 -0.7295 -1.2054 12 6 2.0476 -0.7356 -1.2435 13 1 1.6841 -1.7632 -1.2406 14 6 1.5692 -0.0308 -2.4867 15 8 2.2312 0.8635 -2.9695 16 7 0.4060 -0.3943 -3.0622 17 6 -0.1272 0.3543 -4.2089 18 6 -1.5520 0.8133 -3.8749 19 7 -2.3098 -0.3390 -3.3670 20 6 -3.4916 -0.7083 -3.9516 21 1 -3.6518 -0.5308 -5.0048 22 6 -4.4840 -1.3109 -3.1906 23 7 -5.4155 -2.0329 -3.7764 24 14 -4.4971 -1.0969 -1.3349 25 1 -3.8093 -2.2492 -0.6989 26 1 -3.7920 0.1598 -0.9764 27 1 -5.9006 -1.0314 -0.8542 28 6 -1.7793 -1.0841 -2.2167 29 6 -0.3517 -1.5466 -2.5543 30 1 -0.3633 -1.0252 -0.0714 31 1 -0.3633 0.4507 0.9235 32 1 -0.3634 0.5745 -0.8522 33 1 3.3780 -1.3441 3.2811 34 1 5.7549 -1.9795 3.3133 35 1 7.0475 -2.0305 1.2202 36 1 5.9690 -1.4406 -0.9112 37 1 -0.1470 -0.2892 -5.0885 38 1 0.5013 1.2235 -4.4026 39 1 -2.0322 1.1994 -4.7741 40 1 -1.5163 1.5921 -3.1131 41 1 -6.1087 -2.4542 -3.2445 42 1 -1.7593 -0.4373 -1.3396 43 1 -2.4097 -1.9514 -2.0204 44 1 -0.3875 -2.3254 -3.3160 45 1 0.1285 -1.9326 -1.6551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195130736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:11 Heat of formation + Delta-G solvation = -45.394239 kcal Electronic energy + Delta-G solvation = -29986.407548 eV Core-core repulsion = 25970.722761 eV Total energy + Delta-G solvation = -4015.684786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.82042 -41.17949 -38.97209 -38.74558 -38.23886 -35.87148 -34.44666 -33.46752 -32.20042 -31.72531 -30.16894 -29.62961 -28.06516 -25.47955 -24.94804 -24.86279 -23.73198 -23.04331 -21.59281 -20.44574 -20.03512 -19.49298 -18.62223 -17.96421 -17.68247 -17.15267 -16.83096 -16.76129 -16.17990 -16.14422 -15.87396 -15.75145 -15.64553 -15.35164 -15.01120 -14.86401 -14.70822 -14.36417 -14.16487 -14.05665 -13.73271 -13.59595 -13.46333 -13.01521 -12.87605 -12.81248 -12.58795 -12.38080 -12.34560 -12.11445 -12.03200 -11.80106 -11.60641 -11.55320 -10.98595 -10.82602 -10.05014 -9.69219 -9.17098 -8.86327 -8.17241 -5.52902 0.25501 0.26849 1.00477 1.30666 1.34061 1.45718 1.52976 1.86173 2.26562 2.41678 2.70112 2.88020 3.00112 3.06158 3.24413 3.37124 3.47851 3.66562 3.91617 3.93847 4.02046 4.10017 4.20314 4.24091 4.27269 4.36890 4.41394 4.45765 4.49133 4.53359 4.60111 4.66692 4.75930 4.84181 4.89231 4.96026 5.11730 5.14770 5.18980 5.29830 5.48777 5.66824 5.76233 5.85596 6.08299 6.16707 6.26665 6.78175 6.87290 7.57197 7.97505 9.02201 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.003611 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.131752 B = 7752.063589 C = 8664.237430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.075 3.925 3 H 0.082 0.918 4 O -0.304 6.304 5 C 0.024 3.976 6 C -0.119 4.119 7 C -0.108 4.108 8 C -0.108 4.108 9 C -0.124 4.124 10 C 0.022 3.978 11 O -0.306 6.306 12 C 0.038 3.962 13 H 0.121 0.879 14 C 0.531 3.469 15 O -0.557 6.557 16 N -0.587 5.587 17 C 0.104 3.896 18 C 0.134 3.866 19 N -0.615 5.615 20 C -0.253 4.253 21 H 0.053 0.947 22 C -0.027 4.027 23 N -0.952 5.952 24 Si 0.934 3.066 25 H -0.264 1.264 26 H -0.256 1.256 27 H -0.314 1.314 28 C 0.101 3.899 29 C 0.087 3.913 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.140 0.860 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.262 0.738 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.055 -0.012 13.474 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.018 3.982 3 H 0.100 0.900 4 O -0.219 6.219 5 C -0.020 4.020 6 C -0.137 4.137 7 C -0.126 4.126 8 C -0.126 4.126 9 C -0.142 4.142 10 C -0.023 4.023 11 O -0.221 6.221 12 C -0.022 4.022 13 H 0.138 0.862 14 C 0.317 3.683 15 O -0.436 6.436 16 N -0.320 5.320 17 C -0.019 4.019 18 C 0.008 3.992 19 N -0.339 5.339 20 C -0.382 4.382 21 H 0.071 0.929 22 C -0.223 4.223 23 N -0.597 5.597 24 Si 0.762 3.238 25 H -0.190 1.190 26 H -0.180 1.180 27 H -0.243 1.243 28 C -0.024 4.024 29 C -0.036 4.036 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.168 0.832 34 H 0.185 0.815 35 H 0.183 0.817 36 H 0.158 0.842 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 21.201 0.406 13.167 24.960 hybrid contribution -0.978 0.044 0.097 0.984 sum 20.223 0.451 13.263 24.188 Atomic orbital electron populations 1.22307 0.89275 1.04884 1.05033 1.22885 0.97693 0.95100 0.82548 0.89993 1.86333 1.22118 1.73306 1.40109 1.19335 0.84362 1.03965 0.94365 1.20819 0.95773 1.01898 0.95223 1.21392 0.92298 0.98799 1.00079 1.21355 1.01672 0.98990 0.90561 1.20770 0.91101 1.01291 1.01062 1.19402 0.95070 1.04296 0.83516 1.86314 1.19068 1.85607 1.31067 1.23117 0.81389 1.02415 0.95249 0.86214 1.19738 0.81031 0.83250 0.84242 1.90687 1.55773 1.32483 1.64615 1.47938 1.20725 1.31095 1.32227 1.22190 0.95383 0.97006 0.87348 1.21452 0.90121 0.88662 0.98916 1.44352 1.22385 1.31169 1.36028 1.18793 0.91517 1.35241 0.92658 0.92927 1.25952 0.95740 0.98573 1.02034 1.69971 1.18124 1.34181 1.37472 0.86042 0.75789 0.79692 0.82269 1.18974 1.17970 1.24310 1.22154 0.93136 0.96457 0.90651 1.22680 0.92666 0.87559 1.00732 0.89701 0.88650 0.89996 0.83218 0.81463 0.81666 0.84169 0.90785 0.88669 0.90308 0.94473 0.92855 0.92576 0.91315 0.89987 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 6.90 71.98 0.50 -3.23 16 2 C 0.08 1.94 3.17 30.75 0.10 2.03 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 O -0.30 -7.81 10.07 -82.62 -0.83 -8.64 16 5 C 0.02 0.60 6.49 22.56 0.15 0.74 16 6 C -0.12 -2.16 9.96 22.37 0.22 -1.94 16 7 C -0.11 -1.42 10.04 22.26 0.22 -1.20 16 8 C -0.11 -1.51 10.04 22.26 0.22 -1.29 16 9 C -0.12 -2.54 9.96 22.37 0.22 -2.31 16 10 C 0.02 0.57 6.49 22.56 0.15 0.71 16 11 O -0.31 -9.42 9.79 -70.28 -0.69 -10.11 16 12 C 0.04 1.07 2.52 30.01 0.08 1.14 16 13 H 0.12 2.93 5.93 -2.39 -0.01 2.92 16 14 C 0.53 16.89 6.11 87.66 0.54 17.42 16 15 O -0.56 -21.32 16.18 13.81 0.22 -21.10 16 16 N -0.59 -17.88 2.42 -817.16 -1.98 -19.86 16 17 C 0.10 3.25 6.58 86.42 0.57 3.82 16 18 C 0.13 4.72 6.67 86.42 0.58 5.30 16 19 N -0.61 -25.92 2.69 -697.33 -1.88 -27.80 16 20 C -0.25 -13.24 9.99 84.04 0.84 -12.40 16 21 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 22 C -0.03 -1.49 5.19 84.86 0.44 -1.05 16 23 N -0.95 -56.88 13.97 21.65 0.30 -56.58 16 24 Si 0.93 42.19 24.46 68.60 1.68 43.87 16 25 H -0.26 -10.86 6.75 99.48 0.67 -10.19 16 26 H -0.26 -10.86 6.69 99.48 0.67 -10.19 16 27 H -0.31 -14.89 7.11 99.48 0.71 -14.19 16 28 C 0.10 3.65 3.72 86.56 0.32 3.97 16 29 C 0.09 2.53 5.42 86.56 0.47 3.00 16 30 H 0.08 1.88 5.71 -2.39 -0.01 1.87 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.15 5.51 -2.38 -0.01 2.14 16 33 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.10 2.89 7.02 -2.39 -0.02 2.88 16 39 H 0.08 2.76 7.93 -2.39 -0.02 2.75 16 40 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 42 H 0.06 1.89 3.91 -2.39 -0.01 1.88 16 43 H 0.07 2.72 4.80 -2.39 -0.01 2.71 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.11 2.44 3.86 -2.39 -0.01 2.43 16 Total: -1.00 -69.70 343.37 3.39 -66.31 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.95 Total: 19.17 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.61 Total: 14.73 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -3.55 Total: -104.23 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -1.30 Total: -39.85 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.68 Total: 43.87 kcal Total: -69.70 3.39 -66.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195130736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.915 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds