Wall clock time and date at job start Tue Mar 31 2020 17:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.74105 * 2 1 4 4 O 1.43160 * 109.71693 * 239.40346 * 2 1 3 5 5 C 1.36105 * 116.71239 * 194.10940 * 4 2 1 6 6 C 1.38698 * 119.40182 * 197.04985 * 5 4 2 7 7 C 1.38190 * 120.07051 * 180.33102 * 6 5 4 8 8 C 1.38254 * 120.11411 * 0.02562 * 7 6 5 9 9 C 1.38192 * 120.11147 * 359.92251 * 8 7 6 10 10 C 1.38702 * 120.06595 * 0.02849 * 9 8 7 11 11 O 1.36115 * 119.39812 * 180.13550 * 10 9 8 12 12 C 1.43170 * 116.70507 * 197.25877 * 11 10 9 13 13 H 1.09003 * 109.70830 * 194.04227 * 12 11 10 14 14 C 1.50707 * 109.71049 * 73.45913 * 12 11 10 15 15 O 1.21279 * 119.99775 * 329.70420 * 14 12 11 16 16 N 1.34778 * 119.99692 * 149.70181 * 14 12 11 17 17 C 1.46961 * 120.59894 * 354.32776 * 16 14 12 18 18 C 1.53365 * 108.63743 * 125.04314 * 17 16 14 19 19 N 1.46970 * 108.63050 * 49.42668 * 18 17 16 20 20 C 1.36935 * 120.59199 * 124.75111 * 19 18 17 21 21 H 1.08001 * 120.00246 * 323.49407 * 20 19 18 22 22 C 1.38818 * 119.99977 * 143.48832 * 20 19 18 23 23 N 1.31623 * 119.99978 * 358.95040 * 22 20 19 24 24 Si 1.86803 * 119.99919 * 178.94661 * 22 20 19 25 25 H 1.48496 * 109.47324 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46629 * 120.00366 * 24 22 20 27 27 H 1.48497 * 109.47264 * 239.99931 * 24 22 20 28 28 C 1.46964 * 118.81395 * 304.76726 * 19 18 17 29 29 C 1.46968 * 120.59034 * 174.60235 * 16 14 12 30 30 H 1.09001 * 109.47488 * 303.74966 * 1 2 3 31 31 H 1.09006 * 109.46601 * 63.74399 * 1 2 3 32 32 H 1.08995 * 109.47444 * 183.74181 * 1 2 3 33 33 H 1.08011 * 119.96274 * 0.34189 * 6 5 4 34 34 H 1.08007 * 119.94253 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.93969 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.96372 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.61085 * 244.79364 * 17 16 14 38 38 H 1.09000 * 109.60693 * 5.30190 * 17 16 14 39 39 H 1.08998 * 109.61415 * 289.68416 * 18 17 16 40 40 H 1.09000 * 109.61229 * 169.16809 * 18 17 16 41 41 H 0.96993 * 119.99909 * 179.97438 * 23 22 20 42 42 H 1.08997 * 109.61077 * 295.48911 * 28 19 18 43 43 H 1.09000 * 109.60939 * 174.97292 * 28 19 18 44 44 H 1.09000 * 109.60781 * 354.70090 * 29 16 14 45 45 H 1.08999 * 109.60663 * 115.03794 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0130 -0.6859 -1.1600 5 6 3.3294 -1.0317 -1.1625 6 6 3.9433 -1.3661 -2.3604 7 6 5.2774 -1.7259 -2.3780 8 6 6.0038 -1.7542 -1.2019 9 6 5.3985 -1.4212 -0.0051 10 6 4.0601 -1.0581 0.0194 11 8 3.4783 -0.7301 1.2054 12 6 2.0472 -0.7368 1.2437 13 1 1.7011 -0.2280 2.1434 14 6 1.5453 -2.1579 1.2387 15 8 2.1839 -3.0245 0.6802 16 7 0.3868 -2.4655 1.8549 17 6 -0.3345 -1.4540 2.6400 18 6 -1.7697 -1.3530 2.1089 19 7 -2.3312 -2.7078 2.0127 20 6 -3.5051 -3.0221 2.6437 21 1 -3.7312 -2.5930 3.6087 22 6 -4.4047 -3.8921 2.0430 23 7 -4.1388 -4.3988 0.8576 24 14 -5.9927 -4.3438 2.9169 25 1 -6.0533 -3.6453 4.2260 26 1 -7.1508 -3.9329 2.0830 27 1 -6.0368 -5.8118 3.1362 28 6 -1.6100 -3.7193 1.2274 29 6 -0.1748 -3.8203 1.7586 30 1 -0.3634 0.5709 0.8545 31 1 -0.3633 0.4547 -0.9217 32 1 -0.3634 -1.0254 0.0671 33 1 3.3781 -1.3450 -3.2806 34 1 5.7533 -1.9863 -3.3119 35 1 7.0462 -2.0363 -1.2189 36 1 5.9682 -1.4437 0.9121 37 1 -0.3526 -1.7496 3.6890 38 1 0.1621 -0.4891 2.5378 39 1 -1.7630 -0.8890 1.1226 40 1 -2.3718 -0.7552 2.7931 41 1 -4.7672 -5.0069 0.4381 42 1 -1.5919 -3.4237 0.1785 43 1 -2.1066 -4.6842 1.3296 44 1 0.4274 -4.4181 1.0744 45 1 -0.1787 -4.2855 2.7443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195130744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:16 Heat of formation + Delta-G solvation = -30.819800 kcal Electronic energy + Delta-G solvation = -30282.223302 eV Core-core repulsion = 26267.170510 eV Total energy + Delta-G solvation = -4015.052791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.74909 -39.45820 -37.62281 -37.40067 -36.65112 -34.19425 -32.94045 -31.30701 -30.74130 -30.26390 -29.04613 -27.91351 -26.46251 -23.96255 -23.63185 -22.98859 -22.61631 -21.86502 -19.92294 -18.93017 -18.67858 -18.06795 -16.91097 -16.80239 -16.08432 -15.81667 -15.15164 -15.01992 -14.93770 -14.79131 -14.27152 -13.98614 -13.89352 -13.82251 -13.77582 -13.52140 -13.35897 -12.90231 -12.52706 -12.47701 -12.35091 -11.99496 -11.88415 -11.69636 -11.52745 -11.15865 -11.07471 -10.97024 -10.77368 -10.55976 -10.35666 -10.24582 -10.15288 -9.94053 -9.47295 -8.62606 -8.58341 -8.34750 -7.94111 -6.66592 -5.91409 -3.48319 1.33721 1.38505 2.57707 2.87317 3.23728 3.29042 3.33959 3.37160 3.38379 3.78761 4.08839 4.35222 4.40312 4.59480 4.64629 4.86216 4.94110 4.99410 5.14141 5.25776 5.28974 5.34761 5.41777 5.52623 5.61506 5.62629 5.69290 5.77880 5.88461 6.04702 6.12002 6.17024 6.24237 6.25945 6.30750 6.43274 6.47399 6.60703 6.64760 6.75256 6.90389 7.20950 7.43335 7.55736 7.66517 7.73356 8.35850 8.37006 9.07711 9.65674 10.25766 11.14955 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.003204 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.469774 B = 8738.214119 C = 8859.285984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.068 3.932 3 H 0.093 0.907 4 O -0.297 6.297 5 C 0.072 3.928 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.122 4.122 9 C -0.113 4.113 10 C 0.065 3.935 11 O -0.287 6.287 12 C 0.030 3.970 13 H 0.147 0.853 14 C 0.494 3.506 15 O -0.529 6.529 16 N -0.589 5.589 17 C 0.080 3.920 18 C 0.121 3.879 19 N -0.590 5.590 20 C -0.262 4.262 21 H 0.065 0.935 22 C 0.012 3.988 23 N -0.901 5.901 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.288 1.288 28 C 0.160 3.840 29 C 0.086 3.914 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.257 0.743 42 H 0.023 0.977 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.978 10.065 -1.646 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.010 3.990 3 H 0.110 0.890 4 O -0.212 6.212 5 C 0.027 3.973 6 C -0.137 4.137 7 C -0.137 4.137 8 C -0.141 4.141 9 C -0.131 4.131 10 C 0.020 3.980 11 O -0.201 6.201 12 C -0.030 4.030 13 H 0.164 0.836 14 C 0.280 3.720 15 O -0.405 6.405 16 N -0.322 5.322 17 C -0.044 4.044 18 C -0.006 4.006 19 N -0.312 5.312 20 C -0.392 4.392 21 H 0.083 0.917 22 C -0.187 4.187 23 N -0.544 5.544 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.215 1.215 28 C 0.034 3.966 29 C -0.037 4.037 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.126 9.487 -2.002 17.967 hybrid contribution -1.061 -0.266 0.625 1.259 sum 14.065 9.221 -1.378 16.874 Atomic orbital electron populations 1.22343 0.89882 1.05728 1.04023 1.23068 0.97687 0.94963 0.83239 0.88960 1.86344 1.21789 1.72959 1.40071 1.18850 0.83829 1.01149 0.93464 1.20396 0.94764 1.02847 0.95664 1.20835 0.93242 1.01087 0.98497 1.20819 1.00025 1.01523 0.91705 1.20356 0.92148 1.01410 0.99230 1.18805 0.93613 1.01771 0.83824 1.86371 1.18688 1.84171 1.30825 1.23417 0.80937 0.96209 1.02413 0.83563 1.20528 0.81658 0.89996 0.79843 1.90710 1.56025 1.49036 1.44758 1.48076 1.21274 1.13425 1.49471 1.22583 0.95854 0.90084 0.95885 1.21579 0.90573 0.89614 0.98837 1.43880 1.23909 1.04084 1.59375 1.19169 0.93893 1.26836 0.99254 0.91713 1.25364 0.97707 1.00314 0.95356 1.69900 1.36100 1.33371 1.14991 0.86176 0.83470 0.77926 0.78900 1.20151 1.21445 1.21507 1.21262 0.86243 0.96471 0.92656 1.22622 0.98118 0.81379 1.01576 0.89303 0.90366 0.89195 0.85071 0.85376 0.85398 0.85196 0.91124 0.91255 0.94572 0.91405 0.93319 0.95862 0.87762 0.90275 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 6.98 37.16 0.26 -1.80 16 2 C 0.07 0.90 3.35 -26.46 -0.09 0.82 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 4 O -0.30 -4.87 9.69 -33.49 -0.32 -5.19 16 5 C 0.07 1.16 5.73 -39.14 -0.22 0.94 16 6 C -0.12 -1.64 9.96 -39.43 -0.39 -2.03 16 7 C -0.12 -1.38 10.04 -39.59 -0.40 -1.77 16 8 C -0.12 -1.41 10.04 -39.59 -0.40 -1.81 16 9 C -0.11 -1.53 9.96 -39.43 -0.39 -1.92 16 10 C 0.06 1.02 5.34 -39.14 -0.21 0.82 16 11 O -0.29 -4.50 10.10 -46.01 -0.46 -4.97 16 12 C 0.03 0.44 2.89 -27.60 -0.08 0.36 16 13 H 0.15 1.61 5.89 -51.93 -0.31 1.30 16 14 C 0.49 8.92 5.66 -10.98 -0.06 8.86 16 15 O -0.53 -11.47 14.37 -12.48 -0.18 -11.65 16 16 N -0.59 -10.40 2.29 -172.49 -0.39 -10.80 16 17 C 0.08 1.20 5.42 -3.60 -0.02 1.18 16 18 C 0.12 2.17 6.05 -3.60 -0.02 2.15 16 19 N -0.59 -13.61 2.95 -172.04 -0.51 -14.12 16 20 C -0.26 -6.68 9.54 -15.06 -0.14 -6.83 16 21 H 0.07 1.62 7.83 -52.49 -0.41 1.21 16 22 C 0.01 0.32 5.22 -17.43 -0.09 0.23 16 23 N -0.90 -24.93 10.90 55.49 0.60 -24.33 16 24 Si 0.91 20.67 29.55 -169.99 -5.02 15.64 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.16 3.69 5.43 -3.60 -0.02 3.67 16 29 C 0.09 1.72 6.58 -3.60 -0.02 1.70 16 30 H 0.09 0.88 6.55 -51.93 -0.34 0.53 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.46 4.71 -51.93 -0.24 1.21 16 33 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.77 4.13 -51.93 -0.21 0.56 16 39 H 0.04 0.64 4.91 -51.93 -0.25 0.39 16 40 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 2.70 6.10 -51.93 -0.32 2.38 16 44 H 0.08 1.64 7.03 -51.93 -0.36 1.27 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -32.28 345.70 -9.19 -41.47 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.80 Total: 4.17 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -2.30 Total: 4.57 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.30 Total: -49.25 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.97 Total: -21.81 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.28 -9.19 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195130744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.645 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds