Wall clock time and date at job start Tue Mar 31 2020 17:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.74105 * 2 1 4 4 O 1.43160 * 109.71693 * 239.40346 * 2 1 3 5 5 C 1.36105 * 116.71239 * 194.10940 * 4 2 1 6 6 C 1.38698 * 119.40182 * 197.04985 * 5 4 2 7 7 C 1.38190 * 120.07051 * 180.33102 * 6 5 4 8 8 C 1.38254 * 120.11411 * 0.02562 * 7 6 5 9 9 C 1.38192 * 120.11147 * 359.92251 * 8 7 6 10 10 C 1.38702 * 120.06595 * 0.02849 * 9 8 7 11 11 O 1.36115 * 119.39812 * 180.13550 * 10 9 8 12 12 C 1.43170 * 116.70507 * 197.25877 * 11 10 9 13 13 H 1.09003 * 109.70830 * 194.04227 * 12 11 10 14 14 C 1.50707 * 109.71049 * 73.45913 * 12 11 10 15 15 O 1.21279 * 119.99775 * 329.70420 * 14 12 11 16 16 N 1.34778 * 119.99692 * 149.70181 * 14 12 11 17 17 C 1.46961 * 120.59894 * 354.32776 * 16 14 12 18 18 C 1.53365 * 108.63743 * 125.04314 * 17 16 14 19 19 N 1.46970 * 108.63050 * 49.42668 * 18 17 16 20 20 C 1.36935 * 120.59199 * 124.75111 * 19 18 17 21 21 H 1.08001 * 120.00246 * 323.49407 * 20 19 18 22 22 C 1.38818 * 119.99977 * 143.48832 * 20 19 18 23 23 N 1.31623 * 119.99978 * 358.95040 * 22 20 19 24 24 Si 1.86803 * 119.99919 * 178.94661 * 22 20 19 25 25 H 1.48496 * 109.47324 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46629 * 120.00366 * 24 22 20 27 27 H 1.48497 * 109.47264 * 239.99931 * 24 22 20 28 28 C 1.46964 * 118.81395 * 304.76726 * 19 18 17 29 29 C 1.46968 * 120.59034 * 174.60235 * 16 14 12 30 30 H 1.09001 * 109.47488 * 303.74966 * 1 2 3 31 31 H 1.09006 * 109.46601 * 63.74399 * 1 2 3 32 32 H 1.08995 * 109.47444 * 183.74181 * 1 2 3 33 33 H 1.08011 * 119.96274 * 0.34189 * 6 5 4 34 34 H 1.08007 * 119.94253 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.93969 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.96372 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.61085 * 244.79364 * 17 16 14 38 38 H 1.09000 * 109.60693 * 5.30190 * 17 16 14 39 39 H 1.08998 * 109.61415 * 289.68416 * 18 17 16 40 40 H 1.09000 * 109.61229 * 169.16809 * 18 17 16 41 41 H 0.96993 * 119.99909 * 179.97438 * 23 22 20 42 42 H 1.08997 * 109.61077 * 295.48911 * 28 19 18 43 43 H 1.09000 * 109.60939 * 174.97292 * 28 19 18 44 44 H 1.09000 * 109.60781 * 354.70090 * 29 16 14 45 45 H 1.08999 * 109.60663 * 115.03794 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0130 -0.6859 -1.1600 5 6 3.3294 -1.0317 -1.1625 6 6 3.9433 -1.3661 -2.3604 7 6 5.2774 -1.7259 -2.3780 8 6 6.0038 -1.7542 -1.2019 9 6 5.3985 -1.4212 -0.0051 10 6 4.0601 -1.0581 0.0194 11 8 3.4783 -0.7301 1.2054 12 6 2.0472 -0.7368 1.2437 13 1 1.7011 -0.2280 2.1434 14 6 1.5453 -2.1579 1.2387 15 8 2.1839 -3.0245 0.6802 16 7 0.3868 -2.4655 1.8549 17 6 -0.3345 -1.4540 2.6400 18 6 -1.7697 -1.3530 2.1089 19 7 -2.3312 -2.7078 2.0127 20 6 -3.5051 -3.0221 2.6437 21 1 -3.7312 -2.5930 3.6087 22 6 -4.4047 -3.8921 2.0430 23 7 -4.1388 -4.3988 0.8576 24 14 -5.9927 -4.3438 2.9169 25 1 -6.0533 -3.6453 4.2260 26 1 -7.1508 -3.9329 2.0830 27 1 -6.0368 -5.8118 3.1362 28 6 -1.6100 -3.7193 1.2274 29 6 -0.1748 -3.8203 1.7586 30 1 -0.3634 0.5709 0.8545 31 1 -0.3633 0.4547 -0.9217 32 1 -0.3634 -1.0254 0.0671 33 1 3.3781 -1.3450 -3.2806 34 1 5.7533 -1.9863 -3.3119 35 1 7.0462 -2.0363 -1.2189 36 1 5.9682 -1.4437 0.9121 37 1 -0.3526 -1.7496 3.6890 38 1 0.1621 -0.4891 2.5378 39 1 -1.7630 -0.8890 1.1226 40 1 -2.3718 -0.7552 2.7931 41 1 -4.7672 -5.0069 0.4381 42 1 -1.5919 -3.4237 0.1785 43 1 -2.1066 -4.6842 1.3296 44 1 0.4274 -4.4181 1.0744 45 1 -0.1787 -4.2855 2.7443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195130744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:15 Heat of formation + Delta-G solvation = -50.263001 kcal Electronic energy + Delta-G solvation = -30283.066422 eV Core-core repulsion = 26267.170510 eV Total energy + Delta-G solvation = -4015.895912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.88070 -40.79231 -38.75918 -38.59147 -38.06005 -35.84001 -34.14618 -33.09270 -31.96462 -31.58462 -30.07699 -29.32322 -27.92444 -25.59009 -24.78358 -24.47061 -23.64187 -23.24103 -21.38516 -20.15556 -19.89499 -19.34675 -18.38633 -18.03306 -17.48867 -17.07146 -16.75153 -16.37682 -16.17371 -15.85863 -15.57626 -15.45961 -15.29872 -15.19229 -15.04782 -14.88037 -14.79959 -14.15187 -13.91746 -13.59790 -13.56745 -13.30279 -13.01154 -12.94458 -12.84291 -12.70279 -12.52987 -12.45639 -12.25004 -12.10774 -11.97802 -11.88747 -11.64918 -11.39878 -10.86287 -10.60234 -9.88668 -9.60767 -9.00360 -8.53770 -7.87964 -5.47622 0.32357 0.38181 1.27050 1.47435 1.49703 1.58998 1.69289 2.06760 2.21312 2.49279 2.78265 3.02092 3.17481 3.29596 3.50807 3.61791 3.65726 3.88678 3.96048 4.14184 4.20746 4.23073 4.29931 4.33280 4.43088 4.47929 4.51351 4.60652 4.63310 4.70756 4.75800 4.83873 4.92562 5.06005 5.13490 5.21025 5.22976 5.29360 5.42332 5.52263 5.64611 5.65385 5.72034 5.86892 6.31534 6.39915 6.41710 6.96449 7.12662 7.78203 8.34631 9.16170 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.003204 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.469774 B = 8738.214119 C = 8859.285984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.065 3.935 3 H 0.124 0.876 4 O -0.323 6.323 5 C 0.045 3.955 6 C -0.138 4.138 7 C -0.113 4.113 8 C -0.118 4.118 9 C -0.125 4.125 10 C 0.036 3.964 11 O -0.293 6.293 12 C 0.035 3.965 13 H 0.186 0.814 14 C 0.490 3.510 15 O -0.572 6.572 16 N -0.589 5.589 17 C 0.087 3.913 18 C 0.116 3.884 19 N -0.607 5.607 20 C -0.262 4.262 21 H 0.074 0.926 22 C -0.044 4.044 23 N -0.936 5.936 24 Si 0.969 3.031 25 H -0.261 1.261 26 H -0.294 1.294 27 H -0.295 1.295 28 C 0.176 3.824 29 C 0.101 3.899 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.137 0.863 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.042 0.958 40 H 0.084 0.916 41 H 0.250 0.750 42 H -0.009 1.009 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.458 12.323 -0.393 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.009 3.991 3 H 0.142 0.858 4 O -0.239 6.239 5 C 0.000 4.000 6 C -0.156 4.156 7 C -0.131 4.131 8 C -0.135 4.135 9 C -0.144 4.144 10 C -0.008 4.008 11 O -0.207 6.207 12 C -0.025 4.025 13 H 0.203 0.797 14 C 0.278 3.722 15 O -0.452 6.452 16 N -0.322 5.322 17 C -0.036 4.036 18 C -0.009 4.009 19 N -0.331 5.331 20 C -0.392 4.392 21 H 0.092 0.908 22 C -0.240 4.240 23 N -0.581 5.581 24 Si 0.797 3.203 25 H -0.185 1.185 26 H -0.221 1.221 27 H -0.222 1.222 28 C 0.049 3.951 29 C -0.023 4.023 30 H 0.141 0.859 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.155 0.845 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.162 0.838 37 H 0.097 0.903 38 H 0.135 0.865 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.009 0.991 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.618 11.800 -0.716 20.394 hybrid contribution -1.436 -0.960 0.175 1.736 sum 15.182 10.840 -0.541 18.663 Atomic orbital electron populations 1.22344 0.89544 1.03763 1.05875 1.23355 0.97862 0.95970 0.81929 0.85835 1.86294 1.22380 1.73670 1.41531 1.19191 0.83876 1.02502 0.94430 1.20750 0.96061 1.03298 0.95513 1.21285 0.92346 0.99335 1.00128 1.21290 1.01622 0.99825 0.90812 1.20757 0.91673 1.01147 1.00776 1.19142 0.94590 1.03313 0.83803 1.86350 1.19045 1.84248 1.31050 1.23599 0.80726 0.93561 1.04592 0.79724 1.21289 0.81037 0.91439 0.78460 1.90681 1.57365 1.50829 1.46321 1.48102 1.21524 1.12804 1.49765 1.22673 0.93939 0.91520 0.95490 1.21810 0.92316 0.87011 0.99805 1.44097 1.23742 1.06206 1.59036 1.19534 0.94189 1.25935 0.99554 0.90823 1.26094 1.00730 1.01062 0.96107 1.70086 1.36890 1.34457 1.16684 0.85186 0.79690 0.77090 0.78332 1.18501 1.22067 1.22234 1.20831 0.87851 0.95091 0.91287 1.22173 0.95903 0.83218 1.01005 0.85935 0.89898 0.93036 0.84519 0.82052 0.81823 0.83807 0.90266 0.86524 0.94018 0.89810 0.94092 0.99055 0.91134 0.91744 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 6.98 71.98 0.50 -3.18 16 2 C 0.07 1.62 3.35 30.77 0.10 1.72 16 3 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 4 O -0.32 -10.58 9.69 -81.92 -0.79 -11.37 16 5 C 0.04 1.43 5.73 22.56 0.13 1.56 16 6 C -0.14 -3.75 9.96 22.37 0.22 -3.53 16 7 C -0.11 -2.40 10.04 22.26 0.22 -2.17 16 8 C -0.12 -2.41 10.04 22.26 0.22 -2.19 16 9 C -0.13 -3.20 9.96 22.37 0.22 -2.98 16 10 C 0.04 1.11 5.34 22.56 0.12 1.23 16 11 O -0.29 -8.74 10.10 -70.09 -0.71 -9.44 16 12 C 0.03 0.93 2.89 30.03 0.09 1.01 16 13 H 0.19 3.22 5.89 -2.39 -0.01 3.21 16 14 C 0.49 17.42 5.66 87.66 0.50 17.92 16 15 O -0.57 -25.38 14.37 14.22 0.20 -25.17 16 16 N -0.59 -20.39 2.29 -818.02 -1.87 -22.26 16 17 C 0.09 2.34 5.42 86.41 0.47 2.81 16 18 C 0.12 3.95 6.05 86.41 0.52 4.47 16 19 N -0.61 -28.11 2.95 -698.21 -2.06 -30.18 16 20 C -0.26 -13.32 9.54 84.04 0.80 -12.52 16 21 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 22 C -0.04 -2.35 5.22 84.86 0.44 -1.91 16 23 N -0.94 -53.87 10.90 21.65 0.24 -53.64 16 24 Si 0.97 42.96 29.55 68.60 2.03 44.99 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.30 -13.29 7.11 99.48 0.71 -12.59 16 28 C 0.18 8.51 5.43 86.41 0.47 8.98 16 29 C 0.10 4.18 6.58 86.41 0.57 4.75 16 30 H 0.12 1.91 6.55 -2.39 -0.02 1.90 16 31 H 0.08 1.83 8.14 -2.38 -0.02 1.82 16 32 H 0.05 1.63 4.71 -2.39 -0.01 1.62 16 33 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.12 2.04 4.13 -2.39 -0.01 2.03 16 39 H 0.04 1.41 4.91 -2.39 -0.01 1.39 16 40 H 0.08 2.58 7.93 -2.39 -0.02 2.57 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.48 16 43 H 0.07 3.88 6.10 -2.39 -0.01 3.86 16 44 H 0.06 2.82 7.03 -2.39 -0.02 2.81 16 45 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -74.68 345.70 3.66 -71.02 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 1.02 Total: 20.08 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 5.61 Total: 15.98 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -3.70 Total: -106.07 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -1.30 Total: -45.99 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -74.68 3.66 -71.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195130744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.755 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds