Wall clock time and date at job start Tue Mar 31 2020 18:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.53006 * 109.46864 * 190.00082 * 14 12 2 16 16 H 1.08993 * 109.47259 * 304.99711 * 15 14 12 17 17 O 1.42898 * 109.46945 * 64.99969 * 15 14 12 18 18 C 1.52998 * 109.46912 * 185.00041 * 15 14 12 19 19 N 1.46505 * 109.47138 * 180.02562 * 18 15 14 20 20 C 1.34519 * 124.45660 * 269.70017 * 19 18 15 21 21 O 1.21450 * 125.71231 * 0.02846 * 20 19 18 22 22 C 1.47812 * 108.57892 * 179.90420 * 20 19 18 23 23 C 1.38574 * 134.30091 * 180.12783 * 22 20 19 24 24 C 1.38610 * 119.71971 * 180.28952 * 23 22 20 25 25 C 1.38226 * 120.46021 * 359.94683 * 24 23 22 26 26 C 1.38614 * 120.45994 * 0.03363 * 25 24 23 27 27 C 1.38569 * 119.72076 * 359.97438 * 26 25 24 28 28 C 1.34526 * 124.46081 * 89.99896 * 19 18 15 29 29 O 1.21446 * 125.71036 * 359.93986 * 28 19 18 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 35 35 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 36 36 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 37 37 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 38 38 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 39 39 H 0.96701 * 114.00312 * 60.00684 * 17 15 14 40 40 H 1.09007 * 109.47062 * 299.99717 * 18 15 14 41 41 H 1.09000 * 109.47602 * 59.99664 * 18 15 14 42 42 H 1.07999 * 120.13301 * 0.23652 * 23 22 20 43 43 H 1.07999 * 119.76628 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.76807 * 180.02562 * 25 24 23 45 45 H 1.07994 * 120.13810 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8627 -0.9041 -3.6342 16 1 2.9275 -1.1362 -3.6488 17 8 1.1117 -2.1170 -3.5516 18 6 1.4860 -0.1572 -4.9153 19 7 1.7860 -0.9980 -6.0769 20 6 2.9607 -0.9992 -6.7325 21 8 3.9257 -0.3144 -6.4593 22 6 2.8813 -1.9756 -7.8394 23 6 3.7615 -2.3973 -8.8231 24 6 3.3594 -3.3557 -9.7402 25 6 2.0877 -3.8938 -9.6792 26 6 1.1966 -3.4820 -8.7006 27 6 1.5846 -2.5246 -7.7771 28 6 0.9213 -1.8664 -6.6319 29 8 -0.2140 -2.0751 -6.2545 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 0.7089 1.1611 3.4845 34 1 3.8029 -1.3532 -0.3068 35 1 3.8209 -1.3107 -2.0864 36 1 3.9187 0.2052 -1.1592 37 1 0.4722 0.1326 -2.3564 38 1 2.0519 0.9348 -2.5279 39 1 0.1538 -1.9862 -3.5344 40 1 0.4210 0.0749 -4.9007 41 1 2.0587 0.7680 -4.9784 42 1 4.7564 -1.9802 -8.8754 43 1 4.0447 -3.6845 -10.5074 44 1 1.7862 -4.6402 -10.3992 45 1 0.2041 -3.9057 -8.6580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247792384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:06 Heat of formation + Delta-G solvation = -49.826162 kcal Electronic energy + Delta-G solvation = -28521.485385 eV Core-core repulsion = 24505.608416 eV Total energy + Delta-G solvation = -4015.876969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54198 -39.00202 -38.78265 -37.97636 -36.17578 -35.59308 -32.81261 -32.51798 -31.56310 -30.06171 -29.00291 -26.99826 -25.37243 -24.95110 -24.13296 -22.93102 -22.48266 -21.29427 -20.18891 -19.39412 -18.08691 -17.53646 -16.96243 -16.74031 -16.27232 -15.88821 -15.56278 -15.42277 -14.90559 -14.88918 -14.66762 -14.42956 -14.18628 -14.12322 -13.80375 -13.54674 -13.12799 -12.77112 -12.70762 -12.36472 -12.20651 -12.11678 -11.67568 -11.34170 -11.11895 -10.92866 -10.83582 -10.73201 -10.59849 -10.52101 -10.25167 -10.13084 -10.01061 -9.88248 -9.68223 -9.65471 -9.32005 -8.84807 -8.40504 -7.13768 -5.99872 -4.03913 -0.27042 0.54451 1.71191 2.09549 2.75358 3.19605 3.31725 3.34059 3.37861 3.41499 4.01598 4.19152 4.38148 4.42292 4.52306 4.60950 4.64945 4.78159 4.86340 4.98521 5.13016 5.23718 5.31526 5.32711 5.42799 5.50660 5.54770 5.59235 5.68171 5.73809 6.04848 6.13830 6.19219 6.26133 6.41570 6.49844 6.79596 6.82983 6.99675 7.04800 7.15074 7.46092 7.51092 7.70471 7.84440 7.96192 8.21128 8.32699 8.60741 9.02231 9.60889 11.07066 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.002443 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.792989 B =11459.604100 C =11688.267227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.212 3.788 3 H -0.003 1.003 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.525 5.525 13 C 0.037 3.963 14 C 0.023 3.977 15 C 0.096 3.904 16 H 0.101 0.899 17 O -0.541 6.541 18 C 0.076 3.924 19 N -0.566 5.566 20 C 0.573 3.427 21 O -0.463 6.463 22 C -0.138 4.138 23 C -0.047 4.047 24 C -0.099 4.099 25 C -0.097 4.097 26 C -0.047 4.047 27 C -0.135 4.135 28 C 0.579 3.421 29 O -0.456 6.456 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.006 0.994 33 H 0.261 0.739 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.011 0.989 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.373 0.627 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 -5.930 -27.432 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.250 5.250 13 C -0.112 4.112 14 C -0.107 4.107 15 C 0.036 3.964 16 H 0.119 0.881 17 O -0.345 6.345 18 C -0.045 4.045 19 N -0.307 5.307 20 C 0.362 3.638 21 O -0.334 6.334 22 C -0.142 4.142 23 C -0.065 4.065 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.066 4.066 27 C -0.139 4.139 28 C 0.367 3.633 29 O -0.327 6.327 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.221 0.779 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.233 -6.222 -26.819 27.622 hybrid contribution 0.128 0.802 0.955 1.254 sum 2.361 -5.420 -25.864 26.531 Atomic orbital electron populations 1.21856 0.97730 0.99722 0.99741 1.19262 0.92331 0.91865 0.85885 0.98553 1.21115 1.31021 1.12245 0.89710 0.91887 1.24935 0.95230 0.95092 0.99027 1.69882 1.36973 1.23044 1.23497 0.86568 0.79059 0.79791 0.82030 1.21382 1.20192 1.20369 1.62045 1.09226 1.52245 1.01454 1.22245 0.88776 0.98966 1.01195 1.22706 1.01727 0.94695 0.91534 1.22342 0.97380 0.85894 0.90824 0.88119 1.86589 1.21944 1.29562 1.96434 1.22666 1.03885 0.93982 0.83943 1.46395 1.14932 1.39447 1.29969 1.18381 0.81960 0.81670 0.81807 1.90820 1.32880 1.41748 1.67951 1.20609 0.95986 0.99520 0.98095 1.20816 0.99204 0.94920 0.91595 1.21458 0.96534 0.95429 0.98281 1.21469 0.93327 0.99112 0.97650 1.20821 1.00477 0.93460 0.91797 1.20631 0.95387 0.99969 0.97865 1.18247 0.84635 0.78319 0.82072 1.90792 1.16344 1.61088 1.64439 0.94527 0.89641 0.97482 0.92957 0.90480 0.93908 0.97087 0.90049 0.95123 0.77947 0.88107 0.87761 0.84049 0.84113 0.84100 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.76 37.16 0.33 -2.91 16 2 C 0.21 5.42 2.06 -68.87 -0.14 5.27 16 3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 4 C -0.50 -13.96 7.93 -34.44 -0.27 -14.24 16 5 H 0.06 1.76 6.39 -52.49 -0.34 1.42 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.53 -11.50 4.57 -236.28 -1.08 -12.58 16 13 C 0.04 0.76 9.05 60.06 0.54 1.30 16 14 C 0.02 0.41 4.41 -3.82 -0.02 0.39 16 15 C 0.10 1.48 3.20 -26.73 -0.09 1.40 16 16 H 0.10 1.69 6.26 -51.93 -0.33 1.36 16 17 O -0.54 -9.05 12.61 -35.23 -0.44 -9.50 16 18 C 0.08 0.95 5.43 -4.04 -0.02 0.93 16 19 N -0.57 -7.20 2.55 -117.62 -0.30 -7.50 16 20 C 0.57 7.30 8.02 -12.46 -0.10 7.20 16 21 O -0.46 -6.90 17.68 5.41 0.10 -6.80 16 22 C -0.14 -1.40 6.41 -104.83 -0.67 -2.07 16 23 C -0.05 -0.33 10.09 -39.32 -0.40 -0.73 16 24 C -0.10 -0.47 10.04 -39.45 -0.40 -0.87 16 25 C -0.10 -0.47 10.04 -39.45 -0.40 -0.86 16 26 C -0.05 -0.34 10.09 -39.32 -0.40 -0.73 16 27 C -0.13 -1.37 6.40 -104.84 -0.67 -2.04 16 28 C 0.58 7.31 7.57 -12.46 -0.09 7.22 16 29 O -0.46 -6.59 17.54 5.41 0.09 -6.50 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 32 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.08 1.69 6.23 -51.93 -0.32 1.37 16 35 H 0.04 0.79 6.21 -51.93 -0.32 0.46 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 1.41 5.83 -51.93 -0.30 1.11 16 38 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 39 H 0.37 5.52 9.05 45.56 0.41 5.93 16 40 H 0.10 1.13 7.96 -51.93 -0.41 0.72 16 41 H 0.10 1.20 7.96 -51.93 -0.41 0.79 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 44 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 45 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -33.30 373.18 -8.47 -41.77 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.18 Total: 3.13 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.89 Total: 0.79 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.75 Total: -45.15 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.25 Total: -22.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.30 -8.47 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247792384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.059 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds