Wall clock time and date at job start Tue Mar 31 2020 18:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.53006 * 109.46864 * 190.00082 * 14 12 2 16 16 H 1.08993 * 109.47259 * 304.99711 * 15 14 12 17 17 O 1.42898 * 109.46945 * 64.99969 * 15 14 12 18 18 C 1.52998 * 109.46912 * 185.00041 * 15 14 12 19 19 N 1.46505 * 109.47138 * 180.02562 * 18 15 14 20 20 C 1.34519 * 124.45660 * 269.70017 * 19 18 15 21 21 O 1.21450 * 125.71231 * 0.02846 * 20 19 18 22 22 C 1.47812 * 108.57892 * 179.90420 * 20 19 18 23 23 C 1.38574 * 134.30091 * 180.12783 * 22 20 19 24 24 C 1.38610 * 119.71971 * 180.28952 * 23 22 20 25 25 C 1.38226 * 120.46021 * 359.94683 * 24 23 22 26 26 C 1.38614 * 120.45994 * 0.03363 * 25 24 23 27 27 C 1.38569 * 119.72076 * 359.97438 * 26 25 24 28 28 C 1.34526 * 124.46081 * 89.99896 * 19 18 15 29 29 O 1.21446 * 125.71036 * 359.93986 * 28 19 18 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 35 35 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 36 36 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 37 37 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 38 38 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 39 39 H 0.96701 * 114.00312 * 60.00684 * 17 15 14 40 40 H 1.09007 * 109.47062 * 299.99717 * 18 15 14 41 41 H 1.09000 * 109.47602 * 59.99664 * 18 15 14 42 42 H 1.07999 * 120.13301 * 0.23652 * 23 22 20 43 43 H 1.07999 * 119.76628 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.76807 * 180.02562 * 25 24 23 45 45 H 1.07994 * 120.13810 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8627 -0.9041 -3.6342 16 1 2.9275 -1.1362 -3.6488 17 8 1.1117 -2.1170 -3.5516 18 6 1.4860 -0.1572 -4.9153 19 7 1.7860 -0.9980 -6.0769 20 6 2.9607 -0.9992 -6.7325 21 8 3.9257 -0.3144 -6.4593 22 6 2.8813 -1.9756 -7.8394 23 6 3.7615 -2.3973 -8.8231 24 6 3.3594 -3.3557 -9.7402 25 6 2.0877 -3.8938 -9.6792 26 6 1.1966 -3.4820 -8.7006 27 6 1.5846 -2.5246 -7.7771 28 6 0.9213 -1.8664 -6.6319 29 8 -0.2140 -2.0751 -6.2545 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 0.7089 1.1611 3.4845 34 1 3.8029 -1.3532 -0.3068 35 1 3.8209 -1.3107 -2.0864 36 1 3.9187 0.2052 -1.1592 37 1 0.4722 0.1326 -2.3564 38 1 2.0519 0.9348 -2.5279 39 1 0.1538 -1.9862 -3.5344 40 1 0.4210 0.0749 -4.9007 41 1 2.0587 0.7680 -4.9784 42 1 4.7564 -1.9802 -8.8754 43 1 4.0447 -3.6845 -10.5074 44 1 1.7862 -4.6402 -10.3992 45 1 0.2041 -3.9057 -8.6580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247792384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:05 Heat of formation + Delta-G solvation = -74.187210 kcal Electronic energy + Delta-G solvation = -28522.541759 eV Core-core repulsion = 24505.608416 eV Total energy + Delta-G solvation = -4016.933343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.40343 -39.90792 -39.77254 -39.20771 -37.60970 -36.73858 -34.76186 -33.43544 -32.09295 -31.54625 -30.62590 -28.42709 -26.73223 -26.18886 -25.66713 -23.95602 -23.20505 -22.66649 -21.34808 -20.88592 -18.82333 -18.59248 -18.35423 -17.97849 -17.48543 -17.35290 -16.65658 -16.52448 -16.37216 -15.76281 -15.62548 -15.52740 -15.38688 -15.19908 -15.14754 -15.00914 -14.46794 -14.12345 -13.72131 -13.68781 -13.23545 -13.20168 -12.97000 -12.81986 -12.78156 -12.66196 -12.62490 -12.17661 -12.11146 -12.00105 -11.89423 -11.69293 -11.44371 -11.32870 -10.95252 -10.60450 -10.52532 -10.19322 -10.14814 -8.93720 -8.13196 -6.24561 -0.99646 0.01516 1.00240 1.18704 1.40649 1.42551 1.50140 1.82929 2.40653 2.59372 2.65682 3.08013 3.16255 3.23376 3.44695 3.62323 3.69632 3.84097 3.98002 4.08385 4.16719 4.20766 4.24229 4.32243 4.43676 4.50208 4.52195 4.62706 4.69271 4.80904 4.86482 4.93174 4.97790 5.01565 5.03691 5.22811 5.23758 5.29533 5.47692 5.54950 5.70152 5.72707 5.76126 6.08155 6.24149 6.34023 6.52022 6.66365 6.76916 6.89028 7.44225 8.92609 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.002443 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.792989 B =11459.604100 C =11688.267227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.217 3.783 3 H -0.036 1.036 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.273 1.273 12 N -0.535 5.535 13 C 0.042 3.958 14 C 0.025 3.975 15 C 0.110 3.890 16 H 0.087 0.913 17 O -0.555 6.555 18 C 0.080 3.920 19 N -0.572 5.572 20 C 0.569 3.431 21 O -0.496 6.496 22 C -0.162 4.162 23 C -0.047 4.047 24 C -0.084 4.084 25 C -0.082 4.082 26 C -0.047 4.047 27 C -0.159 4.159 28 C 0.574 3.426 29 O -0.485 6.485 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.008 0.992 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.381 0.619 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.154 0.846 43 H 0.181 0.819 44 H 0.181 0.819 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 -7.752 -30.192 31.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.110 3.890 3 H -0.019 1.019 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.198 1.198 12 N -0.260 5.260 13 C -0.106 4.106 14 C -0.104 4.104 15 C 0.049 3.951 16 H 0.105 0.895 17 O -0.361 6.361 18 C -0.041 4.041 19 N -0.312 5.312 20 C 0.360 3.640 21 O -0.370 6.370 22 C -0.166 4.166 23 C -0.065 4.065 24 C -0.102 4.102 25 C -0.100 4.100 26 C -0.066 4.066 27 C -0.163 4.163 28 C 0.365 3.635 29 O -0.357 6.357 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.027 0.973 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.229 0.771 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.171 0.829 43 H 0.198 0.802 44 H 0.198 0.802 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.732 -8.053 -29.608 30.805 hybrid contribution -0.003 1.309 1.658 2.113 sum 2.729 -6.744 -27.950 28.881 Atomic orbital electron populations 1.21659 0.97008 0.99253 0.99887 1.19067 0.92856 0.90064 0.87027 1.01883 1.21390 1.31236 1.12263 0.91075 0.92592 1.25701 0.95382 0.95788 1.01842 1.70004 1.37669 1.24075 1.24134 0.85590 0.78675 0.78674 0.78556 1.20744 1.19831 1.19779 1.61969 1.09878 1.52338 1.01771 1.22183 0.88244 0.98806 1.01411 1.22763 1.01859 0.95185 0.90615 1.22121 0.96456 0.85295 0.91182 0.89536 1.86556 1.22725 1.30333 1.96531 1.22532 1.04852 0.93840 0.82855 1.46468 1.15343 1.39582 1.29834 1.18885 0.81274 0.81572 0.82249 1.90787 1.33783 1.43320 1.69135 1.20537 0.97065 1.00128 0.98856 1.21175 0.99280 0.95101 0.90975 1.21955 0.97084 0.93438 0.97685 1.21967 0.92573 0.98653 0.96805 1.21177 1.01653 0.92358 0.91401 1.20571 0.95270 1.01981 0.98439 1.18731 0.84257 0.77937 0.82549 1.90760 1.17370 1.62071 1.65539 0.95096 0.92116 0.94693 0.92883 0.92249 0.91724 0.97303 0.89579 0.94523 0.77051 0.86778 0.86879 0.82869 0.80168 0.80160 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.76 71.98 0.63 -5.32 16 2 C 0.22 11.32 2.06 44.17 0.09 11.41 16 3 H -0.04 -2.10 8.14 -2.39 -0.02 -2.12 16 4 C -0.52 -29.58 7.93 25.60 0.20 -29.38 16 5 H 0.06 3.19 6.39 -2.91 -0.02 3.17 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 8 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.54 -23.78 4.57 -901.46 -4.12 -27.90 16 13 C 0.04 1.76 9.05 127.69 1.16 2.92 16 14 C 0.02 0.88 4.41 86.31 0.38 1.26 16 15 C 0.11 3.41 3.20 30.60 0.10 3.51 16 16 H 0.09 2.94 6.26 -2.39 -0.01 2.92 16 17 O -0.56 -18.68 12.61 -148.98 -1.88 -20.56 16 18 C 0.08 2.02 5.43 86.38 0.47 2.49 16 19 N -0.57 -14.77 2.55 -762.95 -1.95 -16.72 16 20 C 0.57 14.75 8.02 86.82 0.70 15.44 16 21 O -0.50 -15.20 17.68 -3.56 -0.06 -15.26 16 22 C -0.16 -3.16 6.41 -20.00 -0.13 -3.29 16 23 C -0.05 -0.55 10.09 22.44 0.23 -0.32 16 24 C -0.08 -0.42 10.04 22.36 0.22 -0.19 16 25 C -0.08 -0.41 10.04 22.36 0.22 -0.19 16 26 C -0.05 -0.56 10.09 22.44 0.23 -0.33 16 27 C -0.16 -3.09 6.40 -20.00 -0.13 -3.21 16 28 C 0.57 14.65 7.57 86.81 0.66 15.30 16 29 O -0.48 -14.20 17.54 -3.55 -0.06 -14.26 16 30 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 32 H 0.03 1.48 6.20 -2.38 -0.01 1.47 16 33 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.06 2.67 6.23 -2.39 -0.01 2.66 16 35 H 0.06 2.40 6.21 -2.39 -0.01 2.39 16 36 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 37 H 0.09 2.95 5.83 -2.38 -0.01 2.94 16 38 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16 39 H 0.38 11.32 9.05 -74.06 -0.67 10.65 16 40 H 0.11 2.54 7.96 -2.38 -0.02 2.53 16 41 H 0.11 2.63 7.96 -2.39 -0.02 2.61 16 42 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.18 -0.46 8.06 -2.91 -0.02 -0.48 16 44 H 0.18 -0.46 8.06 -2.91 -0.02 -0.48 16 45 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -74.65 373.18 0.04 -74.61 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.36 Total: 15.52 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 5.48 Total: 11.21 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -5.82 Total: -98.07 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -2.00 Total: -50.08 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -74.65 0.04 -74.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247792384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.422 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds