Wall clock time and date at job start Tue Mar 31 2020 17:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50098 * 2 1 4 4 C 1.53036 * 109.47321 * 239.91426 * 2 1 3 5 5 C 1.53036 * 109.53970 * 301.36857 * 4 2 1 6 6 H 1.08993 * 109.50281 * 58.64922 * 5 4 2 7 7 C 1.50700 * 109.49662 * 178.71512 * 5 4 2 8 8 O 1.20824 * 120.00132 * 359.93574 * 7 5 4 9 9 O 1.34226 * 120.00241 * 180.20995 * 7 5 4 10 10 C 1.53185 * 109.33860 * 298.67977 * 5 4 2 11 11 N 1.46923 * 108.77748 * 54.62345 * 10 5 4 12 12 C 1.34777 * 120.63471 * 126.41448 * 11 10 5 13 13 O 1.21588 * 120.00160 * 175.61190 * 12 11 10 14 14 N 1.34772 * 119.99781 * 355.60677 * 12 11 10 15 15 C 1.39961 * 119.99748 * 187.27939 * 14 12 11 16 16 C 1.39278 * 119.94811 * 33.42741 * 15 14 12 17 17 C 1.38489 * 120.43040 * 179.97438 * 16 15 14 18 18 C 1.37683 * 120.32011 * 359.97438 * 17 16 15 19 19 C 1.40738 * 119.88366 * 0.02562 * 18 17 16 20 20 C 1.41410 * 120.21329 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99659 * 28.61742 * 20 19 18 22 22 C 1.39931 * 120.00376 * 208.62256 * 20 19 18 23 23 N 1.30828 * 120.00080 * 12.20103 * 22 20 19 24 24 Si 1.86800 * 120.00148 * 192.20781 * 22 20 19 25 25 H 1.48505 * 109.46993 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47239 * 119.99485 * 24 22 20 27 27 H 1.48504 * 109.46854 * 239.99501 * 24 22 20 28 28 C 1.38239 * 119.94164 * 213.15773 * 15 14 12 29 29 C 1.46931 * 118.73812 * 306.38867 * 11 10 5 30 30 H 1.08998 * 109.47332 * 299.93728 * 1 2 3 31 31 H 1.09000 * 109.47015 * 59.93815 * 1 2 3 32 32 H 1.09006 * 109.47041 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.43107 * 181.35922 * 4 2 1 34 34 H 1.08997 * 109.48126 * 61.40410 * 4 2 1 35 35 H 0.96699 * 117.00648 * 179.72274 * 9 7 5 36 36 H 1.09003 * 109.58808 * 174.40918 * 10 5 4 37 37 H 1.09001 * 109.59242 * 294.69219 * 10 5 4 38 38 H 0.96995 * 120.00154 * 7.28288 * 14 12 11 39 39 H 1.08000 * 119.78726 * 359.97438 * 16 15 14 40 40 H 1.08000 * 119.84536 * 179.97438 * 17 16 15 41 41 H 1.07998 * 120.06056 * 180.02562 * 18 17 16 42 42 H 0.96997 * 120.00432 * 180.02562 * 23 22 20 43 43 H 1.08000 * 120.16222 * 359.97438 * 28 15 14 44 44 H 1.08997 * 109.59062 * 173.39096 * 29 11 10 45 45 H 1.09005 * 109.58491 * 293.82610 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0402 -0.7233 -1.2484 5 6 1.5030 -2.1562 -1.2652 6 1 0.4133 -2.1364 -1.2537 7 6 1.9801 -2.8576 -2.5108 8 8 2.6774 -2.2716 -3.3047 9 8 1.6260 -4.1317 -2.7410 10 6 2.0140 -2.9040 -0.0298 11 7 1.6515 -2.1378 1.1703 12 6 0.9747 -2.7214 2.1792 13 8 0.7502 -2.1003 3.2001 14 7 0.5467 -3.9935 2.0564 15 6 -0.2845 -4.5496 3.0356 16 6 -1.2081 -3.7473 3.7012 17 6 -2.0358 -4.2873 4.6714 18 6 -1.9549 -5.6247 4.9882 19 6 -1.0264 -6.4478 4.3238 20 6 -0.9378 -7.8224 4.6433 21 1 -1.8071 -8.3491 5.0084 22 6 0.2763 -8.5004 4.4866 23 7 1.3788 -7.8278 4.2776 24 14 0.3227 -10.3657 4.5756 25 1 -1.0475 -10.8839 4.8194 26 1 0.8373 -10.9098 3.2932 27 1 1.2153 -10.7862 5.6855 28 6 -0.1913 -5.8957 3.3364 29 6 2.0413 -0.7234 1.2499 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 -0.7440 -1.2356 34 1 1.6977 -0.1966 -2.1391 35 1 1.9530 -4.5381 -3.5553 36 1 1.5554 -3.8918 0.0150 37 1 3.0977 -3.0065 -0.0869 38 1 0.8147 -4.5235 1.2896 39 1 -1.2792 -2.6971 3.4593 40 1 -2.7483 -3.6563 5.1819 41 1 -2.6027 -6.0415 5.7451 42 1 2.2203 -8.2977 4.1686 43 1 0.5212 -6.5196 2.8173 44 1 1.6006 -0.2724 2.1390 45 1 3.1275 -0.6459 1.2983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263113476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:08 Heat of formation + Delta-G solvation = -96.535486 kcal Electronic energy + Delta-G solvation = -28950.448602 eV Core-core repulsion = 24932.546165 eV Total energy + Delta-G solvation = -4017.902437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -41.14840 -40.10453 -38.31372 -37.00741 -36.38550 -34.42428 -33.72568 -32.95629 -32.30732 -29.50108 -28.46740 -27.08333 -25.54654 -25.19159 -24.93919 -22.00192 -21.28632 -21.00566 -19.70886 -18.89916 -18.41466 -18.17750 -17.41344 -16.84216 -16.41274 -15.74624 -15.45219 -15.11025 -14.71642 -14.55166 -14.45187 -14.16249 -14.13988 -13.70188 -13.50009 -13.23210 -13.01722 -12.76874 -12.39380 -12.32201 -11.92610 -11.80291 -11.72839 -11.54270 -11.26669 -11.18111 -11.04618 -11.03629 -10.85675 -10.76435 -10.65439 -10.43663 -9.98040 -9.87741 -9.51590 -9.30228 -8.93262 -8.63865 -7.30947 -6.89779 -6.65375 -4.35554 1.84102 2.56541 2.73883 2.87565 2.95323 3.09158 3.14609 3.23747 3.64807 3.96777 4.10804 4.20082 4.39388 4.56759 4.67240 4.70573 4.85113 4.99203 5.07826 5.18556 5.35846 5.44616 5.54379 5.59550 5.62265 5.70109 5.84143 5.85562 5.93582 6.13031 6.19669 6.25622 6.44476 6.67300 6.72253 6.80979 6.99400 7.10010 7.22481 7.34883 7.57085 7.66477 7.82431 7.97843 8.06557 8.27355 8.41062 8.63388 8.92883 8.93006 9.03960 10.26907 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003368 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.990824 B = 8311.225123 C = 9727.040808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.097 4.097 5 C -0.099 4.099 6 H 0.119 0.881 7 C 0.487 3.513 8 O -0.513 6.513 9 O -0.512 6.512 10 C 0.124 3.876 11 N -0.629 5.629 12 C 0.707 3.293 13 O -0.566 6.566 14 N -0.678 5.678 15 C 0.161 3.839 16 C -0.222 4.222 17 C -0.088 4.088 18 C -0.226 4.226 19 C 0.122 3.878 20 C -0.466 4.466 21 H 0.078 0.922 22 C 0.075 3.925 23 N -0.803 5.803 24 Si 0.908 3.092 25 H -0.261 1.261 26 H -0.274 1.274 27 H -0.276 1.276 28 C -0.179 4.179 29 C 0.131 3.869 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.412 0.588 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.395 0.605 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.277 0.723 43 H 0.121 0.879 44 H 0.099 0.901 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.140 9.760 -13.919 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 H 0.108 0.892 4 C -0.135 4.135 5 C -0.119 4.119 6 H 0.137 0.863 7 C 0.328 3.672 8 O -0.401 6.401 9 O -0.324 6.324 10 C -0.001 4.001 11 N -0.368 5.368 12 C 0.409 3.591 13 O -0.442 6.442 14 N -0.326 5.326 15 C 0.069 3.931 16 C -0.243 4.243 17 C -0.107 4.107 18 C -0.246 4.246 19 C 0.119 3.881 20 C -0.496 4.496 21 H 0.096 0.904 22 C -0.141 4.141 23 N -0.430 5.430 24 Si 0.732 3.268 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.201 1.201 28 C -0.201 4.201 29 C 0.008 3.992 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.271 0.729 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.139 0.861 44 H 0.117 0.883 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.274 10.541 -13.044 17.087 hybrid contribution 0.640 -1.461 -0.998 1.881 sum 3.914 9.080 -14.042 17.174 Atomic orbital electron populations 1.21865 0.94473 1.02404 1.01858 1.21560 0.96959 0.99671 0.94317 0.89245 1.21463 1.01426 0.91926 0.98663 1.21544 1.04082 0.96125 0.90155 0.86305 1.23337 0.76617 0.79690 0.87518 1.90722 1.35592 1.66366 1.47448 1.84570 1.72020 1.28082 1.47689 1.21441 1.00680 0.94908 0.83084 1.47194 1.60674 1.11512 1.17418 1.15795 0.78278 0.82066 0.82935 1.90931 1.61562 1.63862 1.27815 1.42796 1.51673 1.11974 1.26118 1.17426 0.91168 0.92967 0.91572 1.20308 1.00901 0.98571 1.04546 1.20416 0.98120 0.94916 0.97220 1.21068 1.05955 0.93368 1.04194 1.17349 0.89476 0.92898 0.88367 1.19543 0.96331 0.94175 1.39587 0.90428 1.25854 0.95129 1.00549 0.92589 1.69821 0.99163 1.37404 1.36609 0.86276 0.79369 0.82655 0.78453 1.18508 1.19912 1.20118 1.21025 1.05255 0.92232 1.01554 1.21545 0.99297 0.79518 0.98881 0.92117 0.92713 0.92287 0.90634 0.90585 0.72937 0.88986 0.90678 0.76832 0.88056 0.89075 0.88873 0.91218 0.86097 0.88271 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.70 37.16 0.32 -1.09 16 2 C -0.11 -0.91 3.21 -90.50 -0.29 -1.20 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.10 -0.82 4.01 -26.69 -0.11 -0.92 16 5 C -0.10 -0.89 2.43 -91.66 -0.22 -1.12 16 6 H 0.12 1.07 6.34 -51.93 -0.33 0.74 16 7 C 0.49 4.61 7.63 36.01 0.27 4.88 16 8 O -0.51 -6.13 16.74 -18.75 -0.31 -6.45 16 9 O -0.51 -3.96 13.36 -39.25 -0.52 -4.48 16 10 C 0.12 1.28 5.64 -3.72 -0.02 1.26 16 11 N -0.63 -8.28 2.41 -178.49 -0.43 -8.71 16 12 C 0.71 12.89 8.00 -86.92 -0.70 12.20 16 13 O -0.57 -12.53 13.55 5.29 0.07 -12.46 16 14 N -0.68 -12.82 5.24 -14.27 -0.07 -12.90 16 15 C 0.16 3.75 6.25 -83.76 -0.52 3.23 16 16 C -0.22 -5.26 8.66 -39.10 -0.34 -5.60 16 17 C -0.09 -2.05 10.02 -39.69 -0.40 -2.45 16 18 C -0.23 -5.61 9.79 -38.84 -0.38 -5.99 16 19 C 0.12 3.24 5.54 -106.85 -0.59 2.64 16 20 C -0.47 -12.26 9.06 -37.74 -0.34 -12.60 16 21 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 22 C 0.07 1.86 5.22 -17.35 -0.09 1.77 16 23 N -0.80 -20.70 10.93 55.55 0.61 -20.09 16 24 Si 0.91 18.57 29.58 -169.99 -5.03 13.54 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 27 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 28 C -0.18 -4.53 8.56 -38.68 -0.33 -4.86 16 29 C 0.13 1.45 5.82 -3.70 -0.02 1.43 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.65 5.97 -51.93 -0.31 0.34 16 33 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 35 H 0.41 1.51 9.10 45.56 0.41 1.92 16 36 H 0.09 0.96 5.58 -51.93 -0.29 0.67 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.40 6.30 6.29 -40.82 -0.26 6.04 16 39 H 0.10 2.38 6.47 -52.49 -0.34 2.04 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 42 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 43 H 0.12 3.11 6.29 -52.49 -0.33 2.78 16 44 H 0.10 1.29 7.03 -51.93 -0.37 0.92 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -32.79 363.91 -9.12 -41.91 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.15 Total: 12.56 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.76 Total: -8.41 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.10 Total: -41.70 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.77 Total: -23.39 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.79 -9.12 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263113476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.626 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds