Wall clock time and date at job start Tue Mar 31 2020 17:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50098 * 2 1 4 4 C 1.53036 * 109.47321 * 239.91426 * 2 1 3 5 5 C 1.53036 * 109.53970 * 301.36857 * 4 2 1 6 6 H 1.08993 * 109.50281 * 58.64922 * 5 4 2 7 7 C 1.50700 * 109.49662 * 178.71512 * 5 4 2 8 8 O 1.20824 * 120.00132 * 359.93574 * 7 5 4 9 9 O 1.34226 * 120.00241 * 180.20995 * 7 5 4 10 10 C 1.53185 * 109.33860 * 298.67977 * 5 4 2 11 11 N 1.46923 * 108.77748 * 54.62345 * 10 5 4 12 12 C 1.34777 * 120.63471 * 126.41448 * 11 10 5 13 13 O 1.21588 * 120.00160 * 175.61190 * 12 11 10 14 14 N 1.34772 * 119.99781 * 355.60677 * 12 11 10 15 15 C 1.39961 * 119.99748 * 187.27939 * 14 12 11 16 16 C 1.39278 * 119.94811 * 33.42741 * 15 14 12 17 17 C 1.38489 * 120.43040 * 179.97438 * 16 15 14 18 18 C 1.37683 * 120.32011 * 359.97438 * 17 16 15 19 19 C 1.40738 * 119.88366 * 0.02562 * 18 17 16 20 20 C 1.41410 * 120.21329 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99659 * 28.61742 * 20 19 18 22 22 C 1.39931 * 120.00376 * 208.62256 * 20 19 18 23 23 N 1.30828 * 120.00080 * 12.20103 * 22 20 19 24 24 Si 1.86800 * 120.00148 * 192.20781 * 22 20 19 25 25 H 1.48505 * 109.46993 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47239 * 119.99485 * 24 22 20 27 27 H 1.48504 * 109.46854 * 239.99501 * 24 22 20 28 28 C 1.38239 * 119.94164 * 213.15773 * 15 14 12 29 29 C 1.46931 * 118.73812 * 306.38867 * 11 10 5 30 30 H 1.08998 * 109.47332 * 299.93728 * 1 2 3 31 31 H 1.09000 * 109.47015 * 59.93815 * 1 2 3 32 32 H 1.09006 * 109.47041 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.43107 * 181.35922 * 4 2 1 34 34 H 1.08997 * 109.48126 * 61.40410 * 4 2 1 35 35 H 0.96699 * 117.00648 * 179.72274 * 9 7 5 36 36 H 1.09003 * 109.58808 * 174.40918 * 10 5 4 37 37 H 1.09001 * 109.59242 * 294.69219 * 10 5 4 38 38 H 0.96995 * 120.00154 * 7.28288 * 14 12 11 39 39 H 1.08000 * 119.78726 * 359.97438 * 16 15 14 40 40 H 1.08000 * 119.84536 * 179.97438 * 17 16 15 41 41 H 1.07998 * 120.06056 * 180.02562 * 18 17 16 42 42 H 0.96997 * 120.00432 * 180.02562 * 23 22 20 43 43 H 1.08000 * 120.16222 * 359.97438 * 28 15 14 44 44 H 1.08997 * 109.59062 * 173.39096 * 29 11 10 45 45 H 1.09005 * 109.58491 * 293.82610 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0402 -0.7233 -1.2484 5 6 1.5030 -2.1562 -1.2652 6 1 0.4133 -2.1364 -1.2537 7 6 1.9801 -2.8576 -2.5108 8 8 2.6774 -2.2716 -3.3047 9 8 1.6260 -4.1317 -2.7410 10 6 2.0140 -2.9040 -0.0298 11 7 1.6515 -2.1378 1.1703 12 6 0.9747 -2.7214 2.1792 13 8 0.7502 -2.1003 3.2001 14 7 0.5467 -3.9935 2.0564 15 6 -0.2845 -4.5496 3.0356 16 6 -1.2081 -3.7473 3.7012 17 6 -2.0358 -4.2873 4.6714 18 6 -1.9549 -5.6247 4.9882 19 6 -1.0264 -6.4478 4.3238 20 6 -0.9378 -7.8224 4.6433 21 1 -1.8071 -8.3491 5.0084 22 6 0.2763 -8.5004 4.4866 23 7 1.3788 -7.8278 4.2776 24 14 0.3227 -10.3657 4.5756 25 1 -1.0475 -10.8839 4.8194 26 1 0.8373 -10.9098 3.2932 27 1 1.2153 -10.7862 5.6855 28 6 -0.1913 -5.8957 3.3364 29 6 2.0413 -0.7234 1.2499 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 -0.7440 -1.2356 34 1 1.6977 -0.1966 -2.1391 35 1 1.9530 -4.5381 -3.5553 36 1 1.5554 -3.8918 0.0150 37 1 3.0977 -3.0065 -0.0869 38 1 0.8147 -4.5235 1.2896 39 1 -1.2792 -2.6971 3.4593 40 1 -2.7483 -3.6563 5.1819 41 1 -2.6027 -6.0415 5.7451 42 1 2.2203 -8.2977 4.1686 43 1 0.5212 -6.5196 2.8173 44 1 1.6006 -0.2724 2.1390 45 1 3.1275 -0.6459 1.2983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263113476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:04 Heat of formation + Delta-G solvation = -116.210169 kcal Electronic energy + Delta-G solvation = -28951.301760 eV Core-core repulsion = 24932.546165 eV Total energy + Delta-G solvation = -4018.755596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.30 seconds Orbital eigenvalues (eV) -42.13897 -41.21817 -39.63232 -38.51694 -37.13574 -36.05733 -35.27399 -34.33435 -33.18397 -31.41763 -30.15763 -27.93431 -27.14553 -26.53699 -25.81017 -23.20986 -23.04472 -22.20352 -21.19066 -19.92166 -19.48042 -19.18677 -19.02190 -17.70618 -17.66720 -17.10146 -16.88957 -16.50171 -16.23772 -16.01314 -15.46631 -15.18600 -15.10722 -14.87122 -14.62081 -14.54684 -14.40402 -14.17418 -14.00193 -13.57243 -13.18267 -12.93873 -12.80640 -12.76438 -12.59990 -12.54487 -12.30562 -12.18437 -11.98677 -11.87968 -11.73765 -11.69679 -11.57362 -11.52292 -11.23121 -11.04437 -10.71681 -9.76156 -9.25200 -8.71369 -8.51323 -6.34177 0.90205 1.07226 1.09697 1.42339 1.50413 1.56898 1.57911 2.05636 2.15297 2.25562 2.80880 2.88161 3.41989 3.60021 3.75066 3.80192 3.89721 4.06712 4.21558 4.30375 4.42809 4.46277 4.58667 4.66541 4.69836 4.77093 4.81716 4.88574 4.91377 5.06894 5.11222 5.13292 5.18308 5.19319 5.21762 5.33567 5.39010 5.53356 5.58826 5.73722 5.84426 5.98666 6.12060 6.13752 6.40934 6.69997 6.90799 6.95837 6.98724 7.03564 7.52986 8.41435 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003368 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.990824 B = 8311.225123 C = 9727.040808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 H 0.115 0.885 4 C -0.092 4.092 5 C -0.094 4.094 6 H 0.120 0.880 7 C 0.496 3.504 8 O -0.538 6.538 9 O -0.512 6.512 10 C 0.120 3.880 11 N -0.616 5.616 12 C 0.705 3.295 13 O -0.609 6.609 14 N -0.674 5.674 15 C 0.168 3.832 16 C -0.232 4.232 17 C -0.086 4.086 18 C -0.245 4.245 19 C 0.094 3.906 20 C -0.499 4.499 21 H 0.077 0.923 22 C 0.036 3.964 23 N -0.833 5.833 24 Si 0.983 3.017 25 H -0.259 1.259 26 H -0.263 1.263 27 H -0.271 1.271 28 C -0.197 4.197 29 C 0.124 3.876 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.430 0.570 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.409 0.591 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.285 0.715 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 9.806 -15.455 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 H 0.133 0.867 4 C -0.129 4.129 5 C -0.114 4.114 6 H 0.138 0.862 7 C 0.339 3.661 8 O -0.428 6.428 9 O -0.326 6.326 10 C -0.004 4.004 11 N -0.353 5.353 12 C 0.407 3.593 13 O -0.488 6.488 14 N -0.323 5.323 15 C 0.074 3.926 16 C -0.253 4.253 17 C -0.105 4.105 18 C -0.265 4.265 19 C 0.091 3.909 20 C -0.529 4.529 21 H 0.095 0.905 22 C -0.178 4.178 23 N -0.460 5.460 24 Si 0.804 3.196 25 H -0.182 1.182 26 H -0.187 1.187 27 H -0.196 1.196 28 C -0.219 4.219 29 C 0.002 3.998 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.292 0.708 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.248 0.752 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.076 10.599 -14.652 18.537 hybrid contribution 0.420 -1.392 -0.570 1.562 sum 4.496 9.207 -15.222 18.349 Atomic orbital electron populations 1.21856 0.95211 1.01297 1.02160 1.21511 0.96164 1.00633 0.92975 0.86744 1.21439 1.01638 0.91275 0.98593 1.21481 1.04165 0.96467 0.89302 0.86191 1.23225 0.75890 0.79912 0.87109 1.90722 1.36755 1.67006 1.48295 1.84536 1.71780 1.27320 1.48940 1.21623 1.01701 0.94652 0.82385 1.47167 1.58918 1.12389 1.16858 1.15930 0.78448 0.81466 0.83449 1.90895 1.63367 1.64652 1.29917 1.42651 1.51281 1.12648 1.25760 1.17458 0.91057 0.92405 0.91704 1.20475 1.01220 0.98665 1.04951 1.20726 0.98173 0.94742 0.96826 1.21244 1.06373 0.94030 1.04861 1.17744 0.90370 0.93698 0.89050 1.19801 0.97189 0.94712 1.41189 0.90530 1.26694 0.94181 1.05394 0.91511 1.69881 0.99867 1.39521 1.36727 0.85146 0.79397 0.76195 0.78847 1.18232 1.18721 1.19578 1.20954 1.05739 0.93044 1.02188 1.21785 1.00368 0.78173 0.99470 0.93340 0.90895 0.94086 0.90173 0.89812 0.70817 0.89170 0.89063 0.75237 0.87905 0.86275 0.88045 0.90429 0.87034 0.90419 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.70 71.98 0.63 -1.97 16 2 C -0.09 -1.40 3.21 -10.71 -0.03 -1.43 16 3 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.09 -1.30 4.01 30.62 0.12 -1.18 16 5 C -0.09 -1.51 2.43 -11.47 -0.03 -1.54 16 6 H 0.12 1.95 6.34 -2.39 -0.02 1.94 16 7 C 0.50 8.33 7.63 71.24 0.54 8.87 16 8 O -0.54 -11.70 16.74 21.97 0.37 -11.33 16 9 O -0.51 -6.84 13.36 -51.38 -0.69 -7.53 16 10 C 0.12 2.28 5.64 86.36 0.49 2.77 16 11 N -0.62 -15.67 2.41 -836.89 -2.02 -17.68 16 12 C 0.70 25.78 8.00 179.06 1.43 27.22 16 13 O -0.61 -27.43 13.55 -3.99 -0.05 -27.49 16 14 N -0.67 -25.71 5.24 -317.33 -1.66 -27.38 16 15 C 0.17 7.97 6.25 38.09 0.24 8.20 16 16 C -0.23 -11.12 8.66 22.58 0.20 -10.92 16 17 C -0.09 -4.04 10.02 22.20 0.22 -3.81 16 18 C -0.25 -12.40 9.79 22.75 0.22 -12.18 16 19 C 0.09 5.13 5.54 -21.31 -0.12 5.02 16 20 C -0.50 -26.83 9.06 23.46 0.21 -26.62 16 21 H 0.08 3.98 7.87 -2.91 -0.02 3.95 16 22 C 0.04 1.79 5.22 85.25 0.45 2.23 16 23 N -0.83 -43.39 10.93 21.82 0.24 -43.15 16 24 Si 0.98 37.89 29.58 68.60 2.03 39.92 16 25 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 26 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 27 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 28 C -0.20 -10.27 8.56 22.85 0.20 -10.07 16 29 C 0.12 2.59 5.82 86.36 0.50 3.09 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 0.86 5.97 -2.38 -0.01 0.85 16 33 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16 34 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 35 H 0.43 2.21 9.10 -74.06 -0.67 1.54 16 36 H 0.09 1.76 5.58 -2.39 -0.01 1.75 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.41 13.00 6.29 -92.71 -0.58 12.42 16 39 H 0.10 4.88 6.47 -2.91 -0.02 4.86 16 40 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 42 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 43 H 0.11 5.92 6.29 -2.91 -0.02 5.90 16 44 H 0.08 2.01 7.03 -2.39 -0.02 1.99 16 45 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -71.92 363.91 3.27 -68.65 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -0.21 Total: 38.31 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 5.27 Total: -12.32 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -3.44 Total: -88.21 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.37 Total: -46.35 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -71.92 3.27 -68.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263113476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.558 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds