Wall clock time and date at job start Tue Mar 31 2020 17:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.49444 * 2 1 4 4 C 1.53039 * 109.50015 * 239.93995 * 2 1 3 5 5 C 1.53037 * 109.53159 * 178.65472 * 4 2 1 6 6 H 1.09002 * 109.49938 * 301.40522 * 5 4 2 7 7 C 1.50694 * 109.50126 * 181.30880 * 5 4 2 8 8 O 1.20831 * 120.00236 * 0.02562 * 7 5 4 9 9 O 1.34233 * 120.00332 * 180.02562 * 7 5 4 10 10 C 1.53170 * 109.32655 * 61.37154 * 5 4 2 11 11 N 1.46932 * 108.76401 * 305.35759 * 10 5 4 12 12 C 1.34770 * 120.62710 * 233.62957 * 11 10 5 13 13 O 1.21586 * 120.00318 * 355.12843 * 12 11 10 14 14 N 1.34782 * 119.99983 * 175.13020 * 12 11 10 15 15 C 1.39960 * 119.99875 * 184.66285 * 14 12 11 16 16 C 1.39285 * 119.94061 * 144.07893 * 15 14 12 17 17 C 1.38494 * 120.42316 * 179.97438 * 16 15 14 18 18 C 1.37680 * 120.32452 * 359.97438 * 17 16 15 19 19 C 1.40738 * 119.88288 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.21204 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00068 * 209.02934 * 20 19 18 22 22 C 1.39933 * 119.99716 * 29.03566 * 20 19 18 23 23 N 1.30830 * 120.00114 * 10.15205 * 22 20 19 24 24 Si 1.86796 * 119.99830 * 190.14472 * 22 20 19 25 25 H 1.48499 * 109.47272 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47011 * 120.00309 * 24 22 20 27 27 H 1.48504 * 109.47311 * 239.99856 * 24 22 20 28 28 C 1.38235 * 119.94714 * 323.79851 * 15 14 12 29 29 C 1.46924 * 118.73969 * 53.60913 * 11 10 5 30 30 H 1.09004 * 109.46669 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47344 * 300.06042 * 1 2 3 32 32 H 1.09004 * 109.47148 * 60.06267 * 1 2 3 33 33 H 1.09002 * 109.46124 * 298.67198 * 4 2 1 34 34 H 1.09004 * 109.46427 * 58.64125 * 4 2 1 35 35 H 0.96697 * 117.00415 * 180.02562 * 9 7 5 36 36 H 1.09000 * 109.59043 * 185.57188 * 10 5 4 37 37 H 1.09002 * 109.70538 * 65.20929 * 10 5 4 38 38 H 0.96994 * 119.99761 * 4.66239 * 14 12 11 39 39 H 1.07998 * 119.79317 * 359.97348 * 16 15 14 40 40 H 1.08010 * 119.83669 * 179.97438 * 17 16 15 41 41 H 1.07996 * 120.06136 * 180.02562 * 18 17 16 42 42 H 0.96999 * 120.00091 * 180.02562 * 23 22 20 43 43 H 1.08002 * 120.15823 * 0.03014 * 28 15 14 44 44 H 1.08995 * 109.58575 * 186.59763 * 29 11 10 45 45 H 1.09004 * 109.58595 * 66.17909 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7226 -1.2486 5 6 3.5708 -0.6938 -1.2664 6 1 3.9154 0.3403 -1.2544 7 6 4.0724 -1.3773 -2.5122 8 8 3.2870 -1.8400 -3.3054 9 8 5.3917 -1.4723 -2.7409 10 6 4.1060 -1.4254 -0.0317 11 7 3.5053 -0.8283 1.1689 12 6 4.2819 -0.3845 2.1770 13 8 5.4850 -0.5560 2.1385 14 7 3.7249 0.2494 3.2280 15 6 4.5386 0.7961 4.2269 16 6 4.1738 1.9898 4.8448 17 6 4.9712 2.5394 5.8348 18 6 6.1341 1.9107 6.2195 19 6 6.5149 0.7033 5.6048 20 6 7.7082 0.0520 5.9942 21 1 8.2478 -0.5565 5.2837 22 6 8.1896 0.1958 7.3002 23 7 7.4439 0.7627 8.2135 24 14 9.8969 -0.4217 7.7394 25 1 10.5322 -1.0181 6.5370 26 1 10.7238 0.7124 8.2245 27 1 9.7923 -1.4496 8.8061 28 6 5.7001 0.1474 4.6027 29 6 2.0420 -0.7237 1.2493 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8894 32 1 -0.3634 0.5129 -0.8906 33 1 1.6972 -1.7570 -1.2356 34 1 1.6579 -0.2240 -2.1390 35 1 5.6654 -1.9191 -3.5536 36 1 5.1903 -1.3228 0.0125 37 1 3.8408 -2.4813 -0.0865 38 1 2.7602 0.3267 3.2919 39 1 3.2632 2.4902 4.5501 40 1 4.6794 3.4658 6.3074 41 1 6.7526 2.3428 6.9923 42 1 7.7778 0.8627 9.1187 43 1 5.9816 -0.7804 4.1269 44 1 1.7644 -0.1582 2.1387 45 1 1.6065 -1.7217 1.2977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263113482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:34 Heat of formation + Delta-G solvation = -98.338747 kcal Electronic energy + Delta-G solvation = -28399.600776 eV Core-core repulsion = 24381.620144 eV Total energy + Delta-G solvation = -4017.980633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.05720 -40.12841 -38.24823 -37.01027 -36.36635 -34.56628 -33.65310 -33.25736 -32.38292 -29.75938 -28.12609 -27.05732 -25.70832 -25.25151 -24.64923 -21.46973 -21.35780 -20.85634 -20.33597 -19.26975 -18.32371 -18.25720 -17.40640 -16.68934 -16.24892 -15.87966 -15.39678 -15.12792 -14.99125 -14.68649 -14.54788 -14.31387 -13.97550 -13.60793 -13.44082 -13.02040 -12.87618 -12.82779 -12.40467 -12.35411 -12.10378 -11.84460 -11.66318 -11.60893 -11.29046 -11.13297 -11.08687 -11.04376 -10.99112 -10.89855 -10.78357 -10.40548 -10.17177 -9.64819 -9.42955 -9.11878 -8.93390 -8.69293 -7.36727 -6.87317 -6.60765 -4.30191 1.85108 2.54623 2.75981 2.87222 3.00020 3.13695 3.20743 3.23203 3.61953 4.01141 4.06722 4.25392 4.41082 4.45673 4.54719 4.72869 4.84437 4.95815 5.07252 5.18732 5.24824 5.36905 5.42542 5.47231 5.60658 5.66055 5.74914 5.79172 5.80864 6.00695 6.20480 6.26165 6.35185 6.41690 6.77609 6.80269 7.08757 7.15944 7.26433 7.34674 7.59497 7.70632 7.82417 8.02138 8.17374 8.27873 8.39213 8.72641 8.91297 9.02257 9.04952 10.31417 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.002809 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.516622 B = 9966.892169 C =11311.164998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.080 0.920 4 C -0.097 4.097 5 C -0.098 4.098 6 H 0.115 0.885 7 C 0.490 3.510 8 O -0.516 6.516 9 O -0.510 6.510 10 C 0.143 3.857 11 N -0.633 5.633 12 C 0.704 3.296 13 O -0.560 6.560 14 N -0.679 5.679 15 C 0.161 3.839 16 C -0.257 4.257 17 C -0.095 4.095 18 C -0.166 4.166 19 C 0.118 3.882 20 C -0.458 4.458 21 H 0.078 0.922 22 C 0.073 3.927 23 N -0.805 5.805 24 Si 0.910 3.090 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.275 1.275 28 C -0.203 4.203 29 C 0.113 3.887 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.411 0.589 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.393 0.607 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.277 0.723 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.720 -2.293 -15.804 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.099 0.901 4 C -0.135 4.135 5 C -0.118 4.118 6 H 0.133 0.867 7 C 0.332 3.668 8 O -0.404 6.404 9 O -0.321 6.321 10 C 0.019 3.981 11 N -0.372 5.372 12 C 0.406 3.594 13 O -0.435 6.435 14 N -0.327 5.327 15 C 0.069 3.931 16 C -0.279 4.279 17 C -0.114 4.114 18 C -0.186 4.186 19 C 0.115 3.885 20 C -0.488 4.488 21 H 0.096 0.904 22 C -0.143 4.143 23 N -0.431 5.431 24 Si 0.735 3.265 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.201 1.201 28 C -0.225 4.225 29 C -0.011 4.011 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.269 0.731 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.229 0.771 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.100 0.900 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.143 -2.308 -15.437 19.178 hybrid contribution 0.252 -0.460 -0.284 0.597 sum -10.891 -2.768 -15.721 19.324 Atomic orbital electron populations 1.21753 0.93735 1.02363 1.02390 1.21539 0.96403 1.00370 0.94346 0.90146 1.21501 0.91294 1.02321 0.98372 1.21502 0.97769 1.01975 0.90586 0.86688 1.23270 0.80004 0.76223 0.87344 1.90719 1.56953 1.45204 1.47492 1.84598 1.26058 1.73783 1.47682 1.21223 1.00661 0.95379 0.80821 1.47209 1.05745 1.65924 1.18295 1.15841 0.85110 0.78731 0.79747 1.90976 1.12352 1.61115 1.79036 1.42732 1.09238 1.58618 1.22140 1.17263 0.93110 0.93151 0.89619 1.20035 1.03499 0.97946 1.06384 1.20464 0.95707 0.98363 0.96906 1.21408 0.97622 0.96195 1.03394 1.17534 0.91535 0.90254 0.89191 1.19611 1.06449 1.26593 0.96180 0.90412 1.25876 0.98593 0.93630 0.96214 1.69806 1.35873 1.34426 1.03044 0.86231 0.82080 0.79029 0.79173 1.18453 1.19869 1.20095 1.21198 0.96160 1.01291 1.03832 1.21754 0.80219 1.00915 0.98186 0.92231 0.92008 0.92110 0.90597 0.90560 0.73064 0.87230 0.91288 0.77072 0.89425 0.89059 0.86129 0.91183 0.86975 0.90027 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.20 37.16 0.34 -0.51 16 2 C -0.11 -0.81 2.87 -90.50 -0.26 -1.07 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.10 -0.79 3.74 -26.69 -0.10 -0.89 16 5 C -0.10 -0.93 2.78 -91.67 -0.25 -1.18 16 6 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 7 C 0.49 4.84 7.63 36.00 0.27 5.11 16 8 O -0.52 -6.22 16.74 -18.75 -0.31 -6.53 16 9 O -0.51 -4.28 13.35 -39.27 -0.52 -4.81 16 10 C 0.14 1.65 5.63 -3.72 -0.02 1.63 16 11 N -0.63 -8.15 2.97 -178.51 -0.53 -8.68 16 12 C 0.70 12.69 8.14 -86.92 -0.71 11.98 16 13 O -0.56 -12.66 13.27 5.29 0.07 -12.59 16 14 N -0.68 -12.13 5.25 -14.27 -0.07 -12.20 16 15 C 0.16 3.63 6.27 -83.76 -0.53 3.11 16 16 C -0.26 -5.61 9.97 -39.10 -0.39 -6.00 16 17 C -0.10 -2.22 10.02 -39.69 -0.40 -2.62 16 18 C -0.17 -4.38 8.66 -38.84 -0.34 -4.72 16 19 C 0.12 3.26 5.55 -106.85 -0.59 2.67 16 20 C -0.46 -12.71 9.06 -37.74 -0.34 -13.06 16 21 H 0.08 2.14 7.87 -52.49 -0.41 1.73 16 22 C 0.07 1.88 5.26 -17.34 -0.09 1.79 16 23 N -0.80 -21.20 10.82 55.55 0.60 -20.60 16 24 Si 0.91 19.41 29.57 -169.99 -5.03 14.38 16 25 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 28 C -0.20 -5.31 8.43 -38.69 -0.33 -5.63 16 29 C 0.11 1.03 5.72 -3.71 -0.02 1.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 35 H 0.41 1.63 9.10 45.56 0.41 2.04 16 36 H 0.11 1.51 7.03 -51.93 -0.37 1.14 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.39 5.49 6.28 -40.82 -0.26 5.23 16 39 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 41 H 0.12 3.27 6.21 -52.49 -0.33 2.95 16 42 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 43 H 0.11 3.05 6.29 -52.49 -0.33 2.72 16 44 H 0.08 0.70 5.56 -51.93 -0.29 0.41 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -33.66 368.16 -9.34 -43.00 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.34 Total: 10.87 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -3.75 Total: -8.39 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.00 Total: -41.48 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.77 Total: -23.93 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.66 -9.34 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263113482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.338 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds