Wall clock time and date at job start Tue Mar 31 2020 17:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.49444 * 2 1 4 4 C 1.53039 * 109.50015 * 239.93995 * 2 1 3 5 5 C 1.53037 * 109.53159 * 178.65472 * 4 2 1 6 6 H 1.09002 * 109.49938 * 301.40522 * 5 4 2 7 7 C 1.50694 * 109.50126 * 181.30880 * 5 4 2 8 8 O 1.20831 * 120.00236 * 0.02562 * 7 5 4 9 9 O 1.34233 * 120.00332 * 180.02562 * 7 5 4 10 10 C 1.53170 * 109.32655 * 61.37154 * 5 4 2 11 11 N 1.46932 * 108.76401 * 305.35759 * 10 5 4 12 12 C 1.34770 * 120.62710 * 233.62957 * 11 10 5 13 13 O 1.21586 * 120.00318 * 355.12843 * 12 11 10 14 14 N 1.34782 * 119.99983 * 175.13020 * 12 11 10 15 15 C 1.39960 * 119.99875 * 184.66285 * 14 12 11 16 16 C 1.39285 * 119.94061 * 144.07893 * 15 14 12 17 17 C 1.38494 * 120.42316 * 179.97438 * 16 15 14 18 18 C 1.37680 * 120.32452 * 359.97438 * 17 16 15 19 19 C 1.40738 * 119.88288 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.21204 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00068 * 209.02934 * 20 19 18 22 22 C 1.39933 * 119.99716 * 29.03566 * 20 19 18 23 23 N 1.30830 * 120.00114 * 10.15205 * 22 20 19 24 24 Si 1.86796 * 119.99830 * 190.14472 * 22 20 19 25 25 H 1.48499 * 109.47272 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47011 * 120.00309 * 24 22 20 27 27 H 1.48504 * 109.47311 * 239.99856 * 24 22 20 28 28 C 1.38235 * 119.94714 * 323.79851 * 15 14 12 29 29 C 1.46924 * 118.73969 * 53.60913 * 11 10 5 30 30 H 1.09004 * 109.46669 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47344 * 300.06042 * 1 2 3 32 32 H 1.09004 * 109.47148 * 60.06267 * 1 2 3 33 33 H 1.09002 * 109.46124 * 298.67198 * 4 2 1 34 34 H 1.09004 * 109.46427 * 58.64125 * 4 2 1 35 35 H 0.96697 * 117.00415 * 180.02562 * 9 7 5 36 36 H 1.09000 * 109.59043 * 185.57188 * 10 5 4 37 37 H 1.09002 * 109.70538 * 65.20929 * 10 5 4 38 38 H 0.96994 * 119.99761 * 4.66239 * 14 12 11 39 39 H 1.07998 * 119.79317 * 359.97348 * 16 15 14 40 40 H 1.08010 * 119.83669 * 179.97438 * 17 16 15 41 41 H 1.07996 * 120.06136 * 180.02562 * 18 17 16 42 42 H 0.96999 * 120.00091 * 180.02562 * 23 22 20 43 43 H 1.08002 * 120.15823 * 0.03014 * 28 15 14 44 44 H 1.08995 * 109.58575 * 186.59763 * 29 11 10 45 45 H 1.09004 * 109.58595 * 66.17909 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7226 -1.2486 5 6 3.5708 -0.6938 -1.2664 6 1 3.9154 0.3403 -1.2544 7 6 4.0724 -1.3773 -2.5122 8 8 3.2870 -1.8400 -3.3054 9 8 5.3917 -1.4723 -2.7409 10 6 4.1060 -1.4254 -0.0317 11 7 3.5053 -0.8283 1.1689 12 6 4.2819 -0.3845 2.1770 13 8 5.4850 -0.5560 2.1385 14 7 3.7249 0.2494 3.2280 15 6 4.5386 0.7961 4.2269 16 6 4.1738 1.9898 4.8448 17 6 4.9712 2.5394 5.8348 18 6 6.1341 1.9107 6.2195 19 6 6.5149 0.7033 5.6048 20 6 7.7082 0.0520 5.9942 21 1 8.2478 -0.5565 5.2837 22 6 8.1896 0.1958 7.3002 23 7 7.4439 0.7627 8.2135 24 14 9.8969 -0.4217 7.7394 25 1 10.5322 -1.0181 6.5370 26 1 10.7238 0.7124 8.2245 27 1 9.7923 -1.4496 8.8061 28 6 5.7001 0.1474 4.6027 29 6 2.0420 -0.7237 1.2493 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8894 32 1 -0.3634 0.5129 -0.8906 33 1 1.6972 -1.7570 -1.2356 34 1 1.6579 -0.2240 -2.1390 35 1 5.6654 -1.9191 -3.5536 36 1 5.1903 -1.3228 0.0125 37 1 3.8408 -2.4813 -0.0865 38 1 2.7602 0.3267 3.2919 39 1 3.2632 2.4902 4.5501 40 1 4.6794 3.4658 6.3074 41 1 6.7526 2.3428 6.9923 42 1 7.7778 0.8627 9.1187 43 1 5.9816 -0.7804 4.1269 44 1 1.7644 -0.1582 2.1387 45 1 1.6065 -1.7217 1.2977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263113482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:30 Heat of formation + Delta-G solvation = -119.766288 kcal Electronic energy + Delta-G solvation = -28400.529944 eV Core-core repulsion = 24381.620144 eV Total energy + Delta-G solvation = -4018.909801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -42.06298 -41.26463 -39.55448 -38.49170 -37.16901 -36.25667 -35.00004 -34.51141 -33.46543 -31.69970 -29.83970 -27.73075 -27.23311 -26.58178 -25.66345 -23.09517 -22.68153 -22.04778 -21.40303 -20.51667 -19.77015 -19.12803 -18.91405 -17.59874 -17.50871 -17.07896 -16.94704 -16.46610 -16.37652 -16.08668 -15.75044 -15.33577 -15.17338 -14.80863 -14.66385 -14.36034 -14.28647 -13.88894 -13.64381 -13.48296 -13.10167 -13.00963 -12.96399 -12.85605 -12.78159 -12.59441 -12.36216 -12.15595 -12.05742 -11.87988 -11.83166 -11.68761 -11.56296 -11.48335 -11.20356 -10.94682 -10.69928 -9.80088 -9.31998 -8.70193 -8.51734 -6.35772 0.94640 1.01782 1.06228 1.37460 1.48017 1.52101 1.53383 2.07561 2.14230 2.23831 2.78916 2.88283 3.48800 3.63909 3.73840 3.75879 3.83100 4.04872 4.30014 4.39282 4.42954 4.51239 4.57959 4.64216 4.66624 4.71460 4.80250 4.88608 5.06491 5.07346 5.14791 5.15783 5.17105 5.19394 5.31565 5.35306 5.41114 5.50438 5.55401 5.70241 5.85218 6.02724 6.12427 6.17471 6.40378 6.73152 6.92420 6.93426 6.98668 7.04853 7.54462 8.40177 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.002809 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.516622 B = 9966.892169 C =11311.164998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.093 4.093 5 C -0.091 4.091 6 H 0.115 0.885 7 C 0.497 3.503 8 O -0.537 6.537 9 O -0.514 6.514 10 C 0.142 3.858 11 N -0.620 5.620 12 C 0.699 3.301 13 O -0.613 6.613 14 N -0.668 5.668 15 C 0.170 3.830 16 C -0.242 4.242 17 C -0.093 4.093 18 C -0.192 4.192 19 C 0.087 3.913 20 C -0.503 4.503 21 H 0.060 0.940 22 C 0.035 3.965 23 N -0.831 5.831 24 Si 0.982 3.018 25 H -0.267 1.267 26 H -0.259 1.259 27 H -0.263 1.263 28 C -0.230 4.230 29 C 0.105 3.895 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.429 0.571 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.415 0.585 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.287 0.713 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.040 -1.704 -16.489 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.130 4.130 5 C -0.112 4.112 6 H 0.133 0.867 7 C 0.339 3.661 8 O -0.427 6.427 9 O -0.328 6.328 10 C 0.018 3.982 11 N -0.357 5.357 12 C 0.401 3.599 13 O -0.492 6.492 14 N -0.318 5.318 15 C 0.076 3.924 16 C -0.264 4.264 17 C -0.112 4.112 18 C -0.212 4.212 19 C 0.085 3.915 20 C -0.533 4.533 21 H 0.078 0.922 22 C -0.178 4.178 23 N -0.458 5.458 24 Si 0.803 3.197 25 H -0.191 1.191 26 H -0.184 1.184 27 H -0.188 1.188 28 C -0.252 4.252 29 C -0.017 4.017 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.291 0.709 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.255 0.745 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.545 -1.726 -16.171 21.165 hybrid contribution 0.845 -0.646 -0.218 1.085 sum -12.700 -2.372 -16.389 20.869 Atomic orbital electron populations 1.21730 0.91932 1.03058 1.03103 1.21475 0.97677 0.99662 0.92949 0.90521 1.21500 0.89882 1.02668 0.98964 1.21443 0.98890 1.01503 0.89328 0.86731 1.23225 0.80149 0.75622 0.87061 1.90714 1.57514 1.46182 1.48249 1.84572 1.25353 1.73819 1.49010 1.21263 0.99260 0.96451 0.81186 1.47185 1.07173 1.64298 1.17073 1.16049 0.84789 0.78554 0.80517 1.90955 1.15061 1.63006 1.80198 1.42478 1.09908 1.58300 1.21141 1.17309 0.92250 0.93072 0.89773 1.20470 1.04309 0.96923 1.04664 1.20842 0.94433 0.99145 0.96756 1.21361 0.99301 0.96483 1.04064 1.17848 0.92206 0.91207 0.90279 1.19748 1.07856 1.28421 0.97322 0.92180 1.26654 1.02389 0.93490 0.95311 1.69842 1.37470 1.34889 1.03570 0.85163 0.76859 0.78958 0.78693 1.19076 1.18380 1.18761 1.21135 0.98151 1.01345 1.04548 1.22122 0.77405 1.02585 0.99593 0.91571 0.91215 0.91541 0.90364 0.90002 0.70868 0.89975 0.89873 0.74461 0.84878 0.85775 0.87697 0.90253 0.89426 0.89051 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 71.98 0.66 -0.48 16 2 C -0.10 -1.19 2.87 -10.72 -0.03 -1.22 16 3 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 4 C -0.09 -1.28 3.74 30.62 0.11 -1.17 16 5 C -0.09 -1.61 2.78 -11.47 -0.03 -1.65 16 6 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 7 C 0.50 9.27 7.63 71.23 0.54 9.81 16 8 O -0.54 -12.20 16.74 21.95 0.37 -11.83 16 9 O -0.51 -8.25 13.35 -51.45 -0.69 -8.93 16 10 C 0.14 3.20 5.63 86.35 0.49 3.69 16 11 N -0.62 -15.28 2.97 -836.96 -2.49 -17.77 16 12 C 0.70 25.20 8.14 179.05 1.46 26.66 16 13 O -0.61 -29.01 13.27 -3.99 -0.05 -29.06 16 14 N -0.67 -23.00 5.25 -317.32 -1.67 -24.67 16 15 C 0.17 7.61 6.27 38.09 0.24 7.85 16 16 C -0.24 -9.98 9.97 22.58 0.23 -9.75 16 17 C -0.09 -4.20 10.02 22.20 0.22 -3.98 16 18 C -0.19 -10.38 8.66 22.75 0.20 -10.18 16 19 C 0.09 5.08 5.55 -21.31 -0.12 4.96 16 20 C -0.50 -29.70 9.06 23.46 0.21 -29.49 16 21 H 0.06 3.59 7.87 -2.91 -0.02 3.57 16 22 C 0.03 1.86 5.26 85.25 0.45 2.31 16 23 N -0.83 -44.95 10.82 21.82 0.24 -44.72 16 24 Si 0.98 40.93 29.57 68.60 2.03 42.96 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 27 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 28 C -0.23 -12.56 8.43 22.85 0.19 -12.37 16 29 C 0.10 1.61 5.72 86.36 0.49 2.10 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 34 H 0.08 1.10 8.07 -2.38 -0.02 1.08 16 35 H 0.43 2.96 9.10 -74.06 -0.67 2.29 16 36 H 0.08 2.35 7.03 -2.39 -0.02 2.34 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.41 10.36 6.28 -92.71 -0.58 9.78 16 39 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 41 H 0.11 5.90 6.21 -2.91 -0.02 5.89 16 42 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 43 H 0.09 5.13 6.29 -2.91 -0.02 5.11 16 44 H 0.09 1.23 5.56 -2.39 -0.01 1.22 16 45 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -77.70 368.16 2.84 -74.86 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.22 Total: 32.06 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 5.31 Total: -12.91 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -3.92 Total: -87.15 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.37 Total: -49.82 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -77.70 2.84 -74.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263113482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.909 kcal (2) G-P(sol) polarization free energy of solvation -77.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds