Wall clock time and date at job start Tue Mar 31 2020 17:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49570 * 2 1 4 4 C 1.53043 * 109.50022 * 120.09272 * 2 1 3 5 5 C 1.53040 * 109.53558 * 58.58658 * 4 2 1 6 6 H 1.09004 * 109.50192 * 301.41765 * 5 4 2 7 7 C 1.50697 * 109.52402 * 181.33286 * 5 4 2 8 8 O 1.20822 * 120.00270 * 0.08337 * 7 5 4 9 9 O 1.34233 * 120.00007 * 180.08240 * 7 5 4 10 10 C 1.53193 * 109.31316 * 61.36538 * 5 4 2 11 11 N 1.46924 * 108.77681 * 305.36341 * 10 5 4 12 12 C 1.34776 * 120.63460 * 233.62563 * 11 10 5 13 13 O 1.21571 * 119.99940 * 174.56346 * 12 11 10 14 14 N 1.34776 * 119.99656 * 354.56891 * 12 11 10 15 15 C 1.39240 * 119.99844 * 187.57224 * 14 12 11 16 16 C 1.39474 * 119.83637 * 33.23435 * 15 14 12 17 17 C 1.36372 * 120.17233 * 179.76287 * 16 15 14 18 18 C 1.40866 * 119.82683 * 0.51144 * 17 16 15 19 19 C 1.41161 * 120.16615 * 179.72260 * 18 17 16 20 20 H 1.08000 * 119.99950 * 210.54426 * 19 18 17 21 21 C 1.39891 * 119.99859 * 30.54404 * 19 18 17 22 22 N 1.30880 * 120.00240 * 11.15252 * 21 19 18 23 23 Si 1.86795 * 120.00097 * 191.15036 * 21 19 18 24 24 H 1.48501 * 109.47309 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47514 * 119.99977 * 23 21 19 26 26 H 1.48503 * 109.47263 * 240.00163 * 23 21 19 27 27 C 1.40872 * 119.67480 * 359.74300 * 18 17 16 28 28 C 1.36376 * 119.82237 * 359.97438 * 27 18 17 29 29 C 1.46926 * 118.73564 * 53.60801 * 11 10 5 30 30 H 1.09003 * 109.46645 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47152 * 300.06629 * 1 2 3 32 32 H 1.08996 * 109.47390 * 60.06913 * 1 2 3 33 33 H 1.09003 * 109.45658 * 298.57005 * 4 2 1 34 34 H 1.08994 * 109.46028 * 178.60962 * 4 2 1 35 35 H 0.96704 * 116.99967 * 179.97438 * 9 7 5 36 36 H 1.09007 * 109.58589 * 65.14990 * 10 5 4 37 37 H 1.08994 * 109.58778 * 185.57654 * 10 5 4 38 38 H 0.97004 * 119.99953 * 7.57936 * 14 12 11 39 39 H 1.08000 * 119.91421 * 0.02562 * 16 15 14 40 40 H 1.08006 * 120.08833 * 180.25570 * 17 16 15 41 41 H 0.96994 * 120.00651 * 179.97438 * 22 21 19 42 42 H 1.07993 * 120.09217 * 179.97438 * 27 18 17 43 43 H 1.08006 * 119.91161 * 180.02562 * 28 27 18 44 44 H 1.08999 * 109.59059 * 66.17917 * 29 11 10 45 45 H 1.09000 * 109.58706 * 186.46096 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7233 1.2482 5 6 1.5031 -2.1560 1.2655 6 1 0.4133 -2.1358 1.2536 7 6 1.9795 -2.8578 2.5111 8 8 2.6767 -2.2722 3.3053 9 8 1.6293 -4.1336 2.7383 10 6 2.0141 -2.9040 0.0301 11 7 1.6516 -2.1379 -1.1701 12 6 0.9741 -2.7213 -2.1786 13 8 0.5938 -2.0544 -3.1212 14 7 0.7182 -4.0441 -2.1420 15 6 0.1601 -4.6761 -3.2500 16 6 0.4772 -4.2335 -4.5341 17 6 -0.0616 -4.8506 -5.6243 18 6 -0.9490 -5.9308 -5.4508 19 6 -1.5154 -6.5711 -6.5741 20 1 -2.4974 -7.0153 -6.5043 21 6 -0.8049 -6.6301 -7.7777 22 7 0.4591 -6.2921 -7.8087 23 14 -1.6602 -7.1913 -9.3406 24 1 -3.0782 -7.5141 -9.0404 25 1 -1.6037 -6.1062 -10.3528 26 1 -0.9787 -8.3993 -9.8714 27 6 -1.2686 -6.3688 -4.1506 28 6 -0.7173 -5.7454 -3.0702 29 6 2.0413 -0.7235 -1.2497 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3634 0.5127 -0.8906 33 1 1.6988 -0.1962 2.1389 34 1 3.1306 -0.7446 1.2351 35 1 1.9595 -4.5415 3.5506 36 1 3.0981 -3.0042 0.0860 37 1 1.5555 -3.8918 -0.0146 38 1 0.9227 -4.5557 -1.3436 39 1 1.1545 -3.4027 -4.6655 40 1 0.1881 -4.5094 -6.6182 41 1 0.9519 -6.3334 -8.6431 42 1 -1.9484 -7.1960 -4.0097 43 1 -0.9611 -6.0802 -2.0727 44 1 3.1275 -0.6459 -1.2981 45 1 1.6028 -0.2733 -2.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263166200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:47 Heat of formation + Delta-G solvation = -95.022332 kcal Electronic energy + Delta-G solvation = -28573.506200 eV Core-core repulsion = 24555.669378 eV Total energy + Delta-G solvation = -4017.836822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.18319 -40.13264 -38.36066 -37.06105 -36.44354 -34.56936 -33.74503 -32.66628 -32.30985 -29.48591 -28.93878 -27.19886 -25.93880 -25.01541 -24.47475 -21.93579 -21.38372 -20.99699 -19.77982 -18.85996 -18.44259 -18.20562 -17.26095 -16.92956 -16.68245 -16.11491 -15.34677 -15.14196 -14.96402 -14.55917 -14.30268 -14.17091 -13.92550 -13.68856 -13.55625 -13.32527 -12.91097 -12.61948 -12.39926 -12.04678 -12.02904 -11.89566 -11.69359 -11.55774 -11.42486 -11.25112 -11.11235 -11.05451 -11.02276 -10.84013 -10.75642 -10.64898 -9.90207 -9.67753 -9.46244 -9.17307 -8.91246 -8.63465 -7.50044 -6.88460 -6.64714 -4.27251 1.78723 2.54243 2.67091 2.90744 3.08091 3.11479 3.15876 3.16857 3.64095 3.98934 4.09473 4.19480 4.35577 4.54516 4.66214 4.72145 4.82177 4.96688 5.02966 5.14780 5.32824 5.41600 5.53638 5.56610 5.61570 5.71685 5.82761 5.84696 5.93142 6.10726 6.15578 6.17075 6.36195 6.43555 6.81129 6.83070 7.07078 7.13763 7.28622 7.33200 7.51034 7.64829 7.80839 8.00623 8.10148 8.29184 8.41829 8.67329 8.93013 8.94067 9.08859 10.28836 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.002556 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.197245 B =10952.436428 C =11663.309545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.097 4.097 5 C -0.099 4.099 6 H 0.119 0.881 7 C 0.487 3.513 8 O -0.513 6.513 9 O -0.513 6.513 10 C 0.125 3.875 11 N -0.631 5.631 12 C 0.701 3.299 13 O -0.569 6.569 14 N -0.667 5.667 15 C 0.021 3.979 16 C -0.090 4.090 17 C -0.144 4.144 18 C 0.104 3.896 19 C -0.462 4.462 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.802 5.802 23 Si 0.909 3.091 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.276 1.276 27 C -0.208 4.208 28 C -0.111 4.111 29 C 0.130 3.870 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.389 0.611 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.278 0.722 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 7.670 17.694 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.107 0.893 4 C -0.135 4.135 5 C -0.119 4.119 6 H 0.136 0.864 7 C 0.328 3.672 8 O -0.400 6.400 9 O -0.325 6.325 10 C 0.001 3.999 11 N -0.370 5.370 12 C 0.403 3.597 13 O -0.445 6.445 14 N -0.315 5.315 15 C -0.072 4.072 16 C -0.110 4.110 17 C -0.164 4.164 18 C 0.101 3.899 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.144 4.144 22 N -0.429 5.429 23 Si 0.734 3.266 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.201 1.201 27 C -0.228 4.228 28 C -0.131 4.131 29 C 0.007 3.993 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.271 0.729 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.225 0.775 39 H 0.120 0.880 40 H 0.137 0.863 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.529 8.514 16.652 19.243 hybrid contribution 0.082 -0.910 0.438 1.014 sum 4.612 7.604 17.090 19.266 Atomic orbital electron populations 1.21850 0.94441 1.02336 1.01852 1.21552 0.96984 0.99674 0.94290 0.89285 1.21466 1.01393 0.91894 0.98715 1.21554 1.04056 0.96197 0.90135 0.86364 1.23352 0.76631 0.79678 0.87523 1.90726 1.35508 1.66426 1.47361 1.84563 1.72093 1.27968 1.47889 1.21415 1.00587 0.94791 0.83149 1.47195 1.60611 1.11581 1.17580 1.15842 0.79052 0.82266 0.82524 1.90924 1.56319 1.62645 1.34582 1.42337 1.65563 1.06362 1.17232 1.17004 1.04413 1.00538 0.85227 1.20421 1.00102 0.99304 0.91155 1.20969 1.01552 0.96437 0.97400 1.17667 0.90611 0.89777 0.91797 1.19527 1.03110 1.32135 0.94485 0.90510 1.25875 0.94434 0.93587 1.00477 1.69822 1.07790 1.36985 1.28262 0.86246 0.80542 0.78762 0.81026 1.18540 1.19846 1.20099 1.20585 1.06810 1.02786 0.92631 1.20001 0.97793 0.98006 0.97343 1.21537 0.99121 0.79638 0.99012 0.92381 0.92806 0.92028 0.90615 0.90646 0.72950 0.90792 0.89126 0.77479 0.88047 0.86346 0.91077 0.88578 0.89223 0.91702 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.70 37.16 0.32 -1.07 16 2 C -0.11 -0.88 3.21 -90.50 -0.29 -1.17 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.10 -0.78 4.01 -26.69 -0.11 -0.88 16 5 C -0.10 -0.83 2.44 -91.65 -0.22 -1.05 16 6 H 0.12 0.99 6.33 -51.93 -0.33 0.66 16 7 C 0.49 4.22 7.63 36.00 0.27 4.50 16 8 O -0.51 -5.80 16.74 -18.75 -0.31 -6.11 16 9 O -0.51 -3.43 13.35 -39.27 -0.52 -3.96 16 10 C 0.13 1.18 5.61 -3.71 -0.02 1.16 16 11 N -0.63 -7.88 2.41 -178.50 -0.43 -8.31 16 12 C 0.70 12.25 7.98 -86.92 -0.69 11.56 16 13 O -0.57 -12.35 13.51 5.30 0.07 -12.28 16 14 N -0.67 -11.72 5.22 -14.10 -0.07 -11.79 16 15 C 0.02 0.46 6.28 -83.57 -0.52 -0.06 16 16 C -0.09 -2.23 8.57 -39.79 -0.34 -2.57 16 17 C -0.14 -3.85 8.59 -39.26 -0.34 -4.19 16 18 C 0.10 2.79 5.53 -106.80 -0.59 2.20 16 19 C -0.46 -12.33 9.03 -37.85 -0.34 -12.67 16 20 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 21 C 0.07 1.85 5.23 -17.34 -0.09 1.75 16 22 N -0.80 -21.09 10.98 55.54 0.61 -20.48 16 23 Si 0.91 18.98 29.57 -169.99 -5.03 13.95 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 27 C -0.21 -5.02 9.74 -39.26 -0.38 -5.40 16 28 C -0.11 -2.41 9.89 -39.79 -0.39 -2.81 16 29 C 0.13 1.40 5.84 -3.71 -0.02 1.38 16 30 H 0.06 0.63 5.97 -51.93 -0.31 0.32 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 34 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.41 1.09 9.10 45.56 0.41 1.51 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.09 0.82 5.64 -51.93 -0.29 0.53 16 38 H 0.39 5.45 6.30 -40.82 -0.26 5.20 16 39 H 0.10 2.54 6.46 -52.49 -0.34 2.20 16 40 H 0.12 3.31 6.37 -52.48 -0.33 2.97 16 41 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 42 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 1.29 6.99 -51.93 -0.36 0.93 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -32.83 363.73 -9.13 -41.96 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.16 Total: 10.88 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -3.76 Total: -9.33 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.11 Total: -40.59 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.77 Total: -22.34 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.83 -9.13 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263166200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.064 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds