Wall clock time and date at job start Tue Mar 31 2020 17:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49570 * 2 1 4 4 C 1.53043 * 109.50022 * 120.09272 * 2 1 3 5 5 C 1.53040 * 109.53558 * 58.58658 * 4 2 1 6 6 H 1.09004 * 109.50192 * 301.41765 * 5 4 2 7 7 C 1.50697 * 109.52402 * 181.33286 * 5 4 2 8 8 O 1.20822 * 120.00270 * 0.08337 * 7 5 4 9 9 O 1.34233 * 120.00007 * 180.08240 * 7 5 4 10 10 C 1.53193 * 109.31316 * 61.36538 * 5 4 2 11 11 N 1.46924 * 108.77681 * 305.36341 * 10 5 4 12 12 C 1.34776 * 120.63460 * 233.62563 * 11 10 5 13 13 O 1.21571 * 119.99940 * 174.56346 * 12 11 10 14 14 N 1.34776 * 119.99656 * 354.56891 * 12 11 10 15 15 C 1.39240 * 119.99844 * 187.57224 * 14 12 11 16 16 C 1.39474 * 119.83637 * 33.23435 * 15 14 12 17 17 C 1.36372 * 120.17233 * 179.76287 * 16 15 14 18 18 C 1.40866 * 119.82683 * 0.51144 * 17 16 15 19 19 C 1.41161 * 120.16615 * 179.72260 * 18 17 16 20 20 H 1.08000 * 119.99950 * 210.54426 * 19 18 17 21 21 C 1.39891 * 119.99859 * 30.54404 * 19 18 17 22 22 N 1.30880 * 120.00240 * 11.15252 * 21 19 18 23 23 Si 1.86795 * 120.00097 * 191.15036 * 21 19 18 24 24 H 1.48501 * 109.47309 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47514 * 119.99977 * 23 21 19 26 26 H 1.48503 * 109.47263 * 240.00163 * 23 21 19 27 27 C 1.40872 * 119.67480 * 359.74300 * 18 17 16 28 28 C 1.36376 * 119.82237 * 359.97438 * 27 18 17 29 29 C 1.46926 * 118.73564 * 53.60801 * 11 10 5 30 30 H 1.09003 * 109.46645 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47152 * 300.06629 * 1 2 3 32 32 H 1.08996 * 109.47390 * 60.06913 * 1 2 3 33 33 H 1.09003 * 109.45658 * 298.57005 * 4 2 1 34 34 H 1.08994 * 109.46028 * 178.60962 * 4 2 1 35 35 H 0.96704 * 116.99967 * 179.97438 * 9 7 5 36 36 H 1.09007 * 109.58589 * 65.14990 * 10 5 4 37 37 H 1.08994 * 109.58778 * 185.57654 * 10 5 4 38 38 H 0.97004 * 119.99953 * 7.57936 * 14 12 11 39 39 H 1.08000 * 119.91421 * 0.02562 * 16 15 14 40 40 H 1.08006 * 120.08833 * 180.25570 * 17 16 15 41 41 H 0.96994 * 120.00651 * 179.97438 * 22 21 19 42 42 H 1.07993 * 120.09217 * 179.97438 * 27 18 17 43 43 H 1.08006 * 119.91161 * 180.02562 * 28 27 18 44 44 H 1.08999 * 109.59059 * 66.17917 * 29 11 10 45 45 H 1.09000 * 109.58706 * 186.46096 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7233 1.2482 5 6 1.5031 -2.1560 1.2655 6 1 0.4133 -2.1358 1.2536 7 6 1.9795 -2.8578 2.5111 8 8 2.6767 -2.2722 3.3053 9 8 1.6293 -4.1336 2.7383 10 6 2.0141 -2.9040 0.0301 11 7 1.6516 -2.1379 -1.1701 12 6 0.9741 -2.7213 -2.1786 13 8 0.5938 -2.0544 -3.1212 14 7 0.7182 -4.0441 -2.1420 15 6 0.1601 -4.6761 -3.2500 16 6 0.4772 -4.2335 -4.5341 17 6 -0.0616 -4.8506 -5.6243 18 6 -0.9490 -5.9308 -5.4508 19 6 -1.5154 -6.5711 -6.5741 20 1 -2.4974 -7.0153 -6.5043 21 6 -0.8049 -6.6301 -7.7777 22 7 0.4591 -6.2921 -7.8087 23 14 -1.6602 -7.1913 -9.3406 24 1 -3.0782 -7.5141 -9.0404 25 1 -1.6037 -6.1062 -10.3528 26 1 -0.9787 -8.3993 -9.8714 27 6 -1.2686 -6.3688 -4.1506 28 6 -0.7173 -5.7454 -3.0702 29 6 2.0413 -0.7235 -1.2497 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3634 0.5127 -0.8906 33 1 1.6988 -0.1962 2.1389 34 1 3.1306 -0.7446 1.2351 35 1 1.9595 -4.5415 3.5506 36 1 3.0981 -3.0042 0.0860 37 1 1.5555 -3.8918 -0.0146 38 1 0.9227 -4.5557 -1.3436 39 1 1.1545 -3.4027 -4.6655 40 1 0.1881 -4.5094 -6.6182 41 1 0.9519 -6.3334 -8.6431 42 1 -1.9484 -7.1960 -4.0097 43 1 -0.9611 -6.0802 -2.0727 44 1 3.1275 -0.6459 -1.2981 45 1 1.6028 -0.2733 -2.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263166200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:42 Heat of formation + Delta-G solvation = -115.245271 kcal Electronic energy + Delta-G solvation = -28574.383133 eV Core-core repulsion = 24555.669378 eV Total energy + Delta-G solvation = -4018.713755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 5.19 seconds Orbital eigenvalues (eV) -42.10274 -41.19348 -39.67347 -38.52724 -37.10664 -36.22185 -35.09167 -34.12184 -33.15391 -31.39791 -30.73208 -28.06762 -27.17922 -26.01362 -25.75783 -23.26358 -23.00613 -22.23067 -21.12160 -19.85813 -19.46628 -19.17709 -18.98889 -18.07497 -17.69864 -17.17861 -16.89677 -16.37054 -16.17895 -15.73267 -15.37936 -15.31299 -15.04221 -14.89812 -14.64407 -14.46850 -14.25934 -14.00437 -13.85966 -13.62374 -13.30495 -13.14863 -12.90863 -12.79975 -12.70305 -12.52874 -12.37582 -12.28843 -11.99308 -11.84576 -11.67483 -11.54541 -11.53154 -11.43880 -11.20542 -10.95881 -10.66832 -9.71210 -9.42288 -8.72944 -8.51715 -6.25125 0.88082 1.11047 1.16816 1.40219 1.46905 1.55275 1.62319 2.07683 2.20210 2.25164 2.82589 2.97170 3.44827 3.62332 3.76535 3.82155 3.90869 4.09749 4.23145 4.32677 4.45105 4.46376 4.48718 4.61434 4.67747 4.71279 4.82641 4.91692 4.98680 5.08097 5.11245 5.12312 5.18831 5.20252 5.32682 5.37202 5.45958 5.54208 5.61495 5.67538 5.79776 6.06546 6.14170 6.15492 6.39226 6.72385 6.98149 6.98463 7.00031 7.05085 7.63111 8.42528 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.002556 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.197245 B =10952.436428 C =11663.309545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.111 0.889 4 C -0.092 4.092 5 C -0.095 4.095 6 H 0.121 0.879 7 C 0.497 3.503 8 O -0.540 6.540 9 O -0.510 6.510 10 C 0.121 3.879 11 N -0.618 5.618 12 C 0.698 3.302 13 O -0.617 6.617 14 N -0.660 5.660 15 C 0.038 3.962 16 C -0.103 4.103 17 C -0.167 4.167 18 C 0.071 3.929 19 C -0.497 4.497 20 H 0.078 0.922 21 C 0.028 3.972 22 N -0.838 5.838 23 Si 0.984 3.016 24 H -0.256 1.256 25 H -0.270 1.270 26 H -0.266 1.266 27 C -0.214 4.214 28 C -0.105 4.105 29 C 0.124 3.876 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.430 0.570 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.410 0.590 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.284 0.716 42 H 0.111 0.889 43 H 0.135 0.865 44 H 0.085 0.915 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 7.298 20.187 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.129 0.871 4 C -0.130 4.130 5 C -0.115 4.115 6 H 0.138 0.862 7 C 0.340 3.660 8 O -0.430 6.430 9 O -0.324 6.324 10 C -0.002 4.002 11 N -0.355 5.355 12 C 0.401 3.599 13 O -0.496 6.496 14 N -0.310 5.310 15 C -0.056 4.056 16 C -0.123 4.123 17 C -0.187 4.187 18 C 0.068 3.932 19 C -0.528 4.528 20 H 0.096 0.904 21 C -0.184 4.184 22 N -0.465 5.465 23 Si 0.805 3.195 24 H -0.180 1.180 25 H -0.195 1.195 26 H -0.191 1.191 27 C -0.234 4.234 28 C -0.125 4.125 29 C 0.001 3.999 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.292 0.708 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.250 0.750 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.153 0.847 44 H 0.103 0.897 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.710 8.131 19.243 21.415 hybrid contribution 0.102 -0.723 -0.124 0.740 sum 4.812 7.408 19.119 21.061 Atomic orbital electron populations 1.21836 0.95277 1.01333 1.01915 1.21495 0.96102 1.00572 0.93187 0.87137 1.21428 1.01600 0.91557 0.98372 1.21483 1.04174 0.96323 0.89525 0.86155 1.23201 0.75843 0.79982 0.87024 1.90729 1.36803 1.67155 1.48285 1.84520 1.71775 1.26980 1.49132 1.21641 1.01764 0.94744 0.82047 1.47153 1.58781 1.12363 1.17250 1.16011 0.79033 0.81956 0.82928 1.90904 1.58204 1.63652 1.36878 1.42116 1.65426 1.06708 1.16745 1.17044 1.03144 0.99913 0.85513 1.20426 1.00388 0.99209 0.92321 1.20834 1.03273 0.97669 0.96924 1.17988 0.91509 0.90282 0.93397 1.19779 1.03599 1.33620 0.95772 0.90385 1.26755 0.94875 0.93314 1.03501 1.69902 1.09191 1.38077 1.29366 0.85132 0.79438 0.78453 0.76486 1.17969 1.19467 1.19058 1.20861 1.06957 1.03248 0.92299 1.20357 0.96378 0.96997 0.98818 1.21737 1.00173 0.78625 0.99334 0.93896 0.90979 0.93729 0.89993 0.90204 0.70785 0.89097 0.88452 0.75015 0.89122 0.88871 0.90549 0.87056 0.84749 0.89734 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.70 71.98 0.63 -1.93 16 2 C -0.09 -1.37 3.21 -10.71 -0.03 -1.41 16 3 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.09 -1.20 4.01 30.62 0.12 -1.08 16 5 C -0.10 -1.31 2.44 -11.46 -0.03 -1.34 16 6 H 0.12 1.67 6.33 -2.38 -0.02 1.66 16 7 C 0.50 7.10 7.63 71.23 0.54 7.64 16 8 O -0.54 -10.75 16.74 21.98 0.37 -10.38 16 9 O -0.51 -5.10 13.35 -51.45 -0.69 -5.79 16 10 C 0.12 1.93 5.61 86.36 0.48 2.42 16 11 N -0.62 -14.50 2.41 -836.93 -2.02 -16.52 16 12 C 0.70 24.02 7.98 179.05 1.43 25.45 16 13 O -0.62 -27.46 13.51 -3.94 -0.05 -27.51 16 14 N -0.66 -22.15 5.22 -316.80 -1.65 -23.80 16 15 C 0.04 1.66 6.28 38.56 0.24 1.90 16 16 C -0.10 -5.30 8.57 22.13 0.19 -5.11 16 17 C -0.17 -9.40 8.59 22.48 0.19 -9.21 16 18 C 0.07 3.91 5.53 -21.27 -0.12 3.79 16 19 C -0.50 -27.38 9.03 23.39 0.21 -27.17 16 20 H 0.08 4.10 7.87 -2.91 -0.02 4.08 16 21 C 0.03 1.48 5.23 85.23 0.45 1.92 16 22 N -0.84 -45.87 10.98 21.82 0.24 -45.63 16 23 Si 0.98 39.64 29.57 68.60 2.03 41.67 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 25 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 27 C -0.21 -10.24 9.74 22.48 0.22 -10.02 16 28 C -0.11 -4.38 9.89 22.14 0.22 -4.16 16 29 C 0.12 2.51 5.84 86.36 0.50 3.01 16 30 H 0.04 0.87 5.97 -2.39 -0.01 0.86 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.04 8.07 -2.39 -0.02 1.02 16 34 H 0.08 1.02 8.13 -2.39 -0.02 1.00 16 35 H 0.43 0.87 9.10 -74.05 -0.67 0.20 16 36 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.10 1.42 5.64 -2.39 -0.01 1.41 16 38 H 0.41 10.26 6.30 -92.71 -0.58 9.68 16 39 H 0.09 4.78 6.46 -2.91 -0.02 4.76 16 40 H 0.09 5.60 6.37 -2.91 -0.02 5.58 16 41 H 0.28 14.13 8.30 -92.71 -0.77 13.36 16 42 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 43 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 44 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 1.93 6.99 -2.39 -0.02 1.92 16 Total: -1.00 -74.78 363.73 3.27 -71.51 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.21 Total: 31.74 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 5.25 Total: -15.29 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -3.43 Total: -85.95 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.37 Total: -43.68 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -74.78 3.27 -71.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263166200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.736 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.19 seconds