Wall clock time and date at job start Tue Mar 31 2020 17:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.50145 * 2 1 4 4 C 1.53039 * 109.49971 * 239.93667 * 2 1 3 5 5 C 1.53038 * 109.52534 * 301.42062 * 4 2 1 6 6 H 1.08999 * 109.49965 * 58.57817 * 5 4 2 7 7 C 1.50705 * 109.49760 * 178.67254 * 5 4 2 8 8 O 1.20825 * 120.00137 * 0.02562 * 7 5 4 9 9 O 1.34232 * 120.00263 * 179.97438 * 7 5 4 10 10 C 1.53195 * 109.31587 * 298.61222 * 5 4 2 11 11 N 1.46921 * 108.76249 * 54.65271 * 10 5 4 12 12 C 1.34783 * 120.62970 * 126.40975 * 11 10 5 13 13 O 1.21583 * 119.99941 * 175.83811 * 12 11 10 14 14 N 1.34774 * 119.99616 * 355.83234 * 12 11 10 15 15 C 1.39247 * 119.99680 * 187.56171 * 14 12 11 16 16 C 1.39480 * 119.83368 * 32.96224 * 15 14 12 17 17 C 1.36375 * 120.16608 * 179.76067 * 16 15 14 18 18 C 1.40868 * 119.82980 * 0.51167 * 17 16 15 19 19 C 1.41151 * 120.16281 * 179.72115 * 18 17 16 20 20 H 1.08007 * 119.99883 * 209.47090 * 19 18 17 21 21 C 1.39892 * 120.00138 * 29.47511 * 19 18 17 22 22 N 1.30877 * 119.99884 * 13.17274 * 21 19 18 23 23 Si 1.86805 * 120.00138 * 193.17097 * 21 19 18 24 24 H 1.48509 * 109.46828 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47207 * 119.99498 * 23 21 19 26 26 H 1.48495 * 109.47569 * 240.00257 * 23 21 19 27 27 C 1.40870 * 119.67250 * 359.74165 * 18 17 16 28 28 C 1.36376 * 119.82737 * 0.02562 * 27 18 17 29 29 C 1.46927 * 118.74137 * 306.38790 * 11 10 5 30 30 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46949 * 300.06405 * 1 2 3 32 32 H 1.08996 * 109.46968 * 60.06467 * 1 2 3 33 33 H 1.08998 * 109.46091 * 61.43179 * 4 2 1 34 34 H 1.08994 * 109.46243 * 181.40679 * 4 2 1 35 35 H 0.96693 * 117.00216 * 180.02562 * 9 7 5 36 36 H 1.09000 * 109.59476 * 294.87034 * 10 5 4 37 37 H 1.08993 * 109.70643 * 174.50628 * 10 5 4 38 38 H 0.96998 * 120.00260 * 7.57100 * 14 12 11 39 39 H 1.08000 * 119.91069 * 0.02562 * 16 15 14 40 40 H 1.08003 * 120.08164 * 180.25222 * 17 16 15 41 41 H 0.97009 * 119.99767 * 179.97438 * 22 21 19 42 42 H 1.07995 * 120.08715 * 179.97438 * 27 18 17 43 43 H 1.07994 * 119.91515 * 180.02562 * 28 27 18 44 44 H 1.08997 * 109.58803 * 293.82196 * 29 11 10 45 45 H 1.09003 * 109.58454 * 173.39167 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 1.5028 -2.1552 -1.2664 6 1 0.4130 -2.1348 -1.2544 7 6 1.9795 -2.8561 -2.5125 8 8 2.6785 -2.2704 -3.3052 9 8 1.6285 -4.1313 -2.7414 10 6 2.0140 -2.9040 -0.0316 11 7 1.6516 -2.1385 1.1689 12 6 0.9748 -2.7228 2.1775 13 8 0.7469 -2.1009 3.1971 14 7 0.5508 -3.9962 2.0557 15 6 -0.2810 -4.5488 3.0262 16 6 -1.2045 -3.7414 3.6900 17 6 -2.0258 -4.2765 4.6382 18 6 -1.9322 -5.6461 4.9541 19 6 -2.7748 -6.2061 5.9385 20 1 -2.4385 -7.0524 6.5192 21 6 -4.0453 -5.6649 6.1618 22 7 -4.5570 -4.8203 5.3030 23 14 -5.0116 -6.1480 7.6858 24 1 -4.2176 -7.1109 8.4907 25 1 -5.2929 -4.9370 8.4980 26 1 -6.2923 -6.7806 7.2802 27 6 -0.9934 -6.4540 4.2831 28 6 -0.1821 -5.9057 3.3339 29 6 2.0414 -0.7242 1.2493 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.6988 -0.1952 -2.1389 34 1 3.1305 -0.7442 -1.2354 35 1 1.9588 -4.5386 -3.5538 36 1 3.0980 -3.0042 -0.0877 37 1 1.5575 -3.8927 0.0138 38 1 0.8250 -4.5279 1.2922 39 1 -1.2722 -2.6907 3.4494 40 1 -2.7432 -3.6509 5.1484 41 1 -5.4382 -4.4453 5.4577 42 1 -0.9156 -7.5047 4.5203 43 1 0.5379 -6.5238 2.8183 44 1 3.1275 -0.6466 1.2978 45 1 1.6007 -0.2738 2.1388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263166201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:54 Heat of formation + Delta-G solvation = -94.886178 kcal Electronic energy + Delta-G solvation = -28677.443736 eV Core-core repulsion = 24659.612818 eV Total energy + Delta-G solvation = -4017.830918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.17186 -40.12355 -38.34923 -37.06015 -36.42636 -34.56887 -33.74212 -32.67355 -32.29654 -29.48215 -28.94545 -27.17875 -25.93342 -25.00657 -24.47411 -21.91984 -21.39525 -20.98937 -19.75235 -18.87281 -18.42651 -18.19645 -17.26671 -16.89864 -16.68873 -16.06664 -15.46710 -15.10790 -14.93420 -14.54535 -14.24605 -14.15225 -13.92754 -13.69868 -13.51371 -13.25732 -13.01098 -12.66075 -12.36126 -12.03877 -12.01021 -11.86492 -11.71965 -11.56090 -11.38055 -11.20669 -11.12894 -11.06238 -11.02235 -10.82654 -10.74307 -10.64573 -9.91057 -9.67690 -9.47299 -9.15552 -8.91778 -8.63296 -7.49971 -6.90043 -6.66288 -4.26853 1.80501 2.54162 2.69515 2.90896 3.08156 3.11054 3.15816 3.16551 3.64804 3.98252 4.10334 4.19849 4.37191 4.55949 4.67410 4.70793 4.83094 4.98270 5.04983 5.16286 5.33379 5.42731 5.54058 5.58438 5.63329 5.72294 5.83668 5.86685 5.94412 6.12911 6.15963 6.18864 6.36609 6.43775 6.81222 6.83195 7.07173 7.13201 7.28634 7.32859 7.52997 7.64543 7.81019 8.00603 8.09690 8.29014 8.42138 8.66887 8.92951 8.93492 9.09023 10.26951 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.002669 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.848039 B =10488.677159 C =11050.279433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.097 4.097 5 C -0.100 4.100 6 H 0.120 0.880 7 C 0.487 3.513 8 O -0.513 6.513 9 O -0.513 6.513 10 C 0.125 3.875 11 N -0.630 5.630 12 C 0.701 3.299 13 O -0.569 6.569 14 N -0.667 5.667 15 C 0.019 3.981 16 C -0.089 4.089 17 C -0.146 4.146 18 C 0.105 3.895 19 C -0.462 4.462 20 H 0.077 0.923 21 C 0.073 3.927 22 N -0.800 5.800 23 Si 0.908 3.092 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.276 1.276 27 C -0.209 4.209 28 C -0.110 4.110 29 C 0.131 3.869 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.411 0.589 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.390 0.610 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.279 0.721 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.623 5.892 -14.598 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 H 0.107 0.893 4 C -0.134 4.134 5 C -0.120 4.120 6 H 0.138 0.862 7 C 0.328 3.672 8 O -0.401 6.401 9 O -0.325 6.325 10 C 0.001 3.999 11 N -0.370 5.370 12 C 0.403 3.597 13 O -0.445 6.445 14 N -0.315 5.315 15 C -0.073 4.073 16 C -0.109 4.109 17 C -0.166 4.166 18 C 0.102 3.898 19 C -0.492 4.492 20 H 0.095 0.905 21 C -0.143 4.143 22 N -0.426 5.426 23 Si 0.733 3.267 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.201 1.201 27 C -0.229 4.229 28 C -0.130 4.130 29 C 0.008 3.992 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.270 0.730 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.225 0.775 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.266 6.836 -13.728 18.455 hybrid contribution -0.174 -0.813 -0.554 0.999 sum 10.092 6.024 -14.282 18.497 Atomic orbital electron populations 1.21865 0.94384 1.02463 1.01934 1.21562 0.97018 0.99664 0.94287 0.89269 1.21463 1.01328 0.91926 0.98729 1.21558 1.04180 0.96154 0.90086 0.86249 1.23360 0.76617 0.79670 0.87519 1.90724 1.35503 1.66388 1.47473 1.84567 1.72050 1.28008 1.47827 1.21415 1.00427 0.94899 0.83208 1.47202 1.60857 1.11501 1.17392 1.15852 0.78485 0.82404 0.82951 1.90928 1.61629 1.63904 1.28063 1.42331 1.51350 1.11784 1.26022 1.17001 0.97934 0.92871 0.99534 1.20414 0.94453 0.98110 0.97902 1.20949 1.00254 0.95223 1.00136 1.17658 0.90397 0.91174 0.90577 1.19531 0.98566 1.14032 1.17077 0.90487 1.25879 0.98081 0.93661 0.96692 1.69836 1.16147 1.24115 1.32472 0.86265 0.79338 0.79333 0.81762 1.18510 1.19807 1.20100 1.20570 1.03286 0.98116 1.00974 1.19996 1.00248 0.93076 0.99726 1.21531 0.99154 0.79593 0.98937 0.92267 0.92037 0.92720 0.90598 0.90683 0.72978 0.90870 0.89091 0.77470 0.88029 0.86433 0.91057 0.88598 0.89251 0.91746 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.70 37.16 0.32 -1.15 16 2 C -0.11 -0.91 3.21 -90.50 -0.29 -1.20 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.10 -0.79 4.01 -26.69 -0.11 -0.90 16 5 C -0.10 -0.86 2.44 -91.65 -0.22 -1.08 16 6 H 0.12 1.07 6.33 -51.93 -0.33 0.74 16 7 C 0.49 4.33 7.63 36.01 0.27 4.60 16 8 O -0.51 -5.88 16.74 -18.75 -0.31 -6.19 16 9 O -0.51 -3.57 13.35 -39.26 -0.52 -4.09 16 10 C 0.13 1.18 5.64 -3.71 -0.02 1.16 16 11 N -0.63 -7.89 2.41 -178.50 -0.43 -8.32 16 12 C 0.70 12.27 7.99 -86.92 -0.69 11.57 16 13 O -0.57 -12.41 13.50 5.29 0.07 -12.33 16 14 N -0.67 -11.70 5.22 -14.10 -0.07 -11.78 16 15 C 0.02 0.42 6.29 -83.57 -0.53 -0.10 16 16 C -0.09 -2.19 8.57 -39.79 -0.34 -2.53 16 17 C -0.15 -3.89 8.60 -39.26 -0.34 -4.23 16 18 C 0.10 2.80 5.53 -106.80 -0.59 2.21 16 19 C -0.46 -12.30 9.03 -37.86 -0.34 -12.65 16 20 H 0.08 1.97 7.88 -52.48 -0.41 1.56 16 21 C 0.07 1.86 5.20 -17.34 -0.09 1.77 16 22 N -0.80 -20.93 11.02 55.54 0.61 -20.32 16 23 Si 0.91 18.91 29.58 -169.99 -5.03 13.88 16 24 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 27 C -0.21 -5.05 9.74 -39.26 -0.38 -5.44 16 28 C -0.11 -2.40 9.89 -39.79 -0.39 -2.79 16 29 C 0.13 1.41 5.82 -3.71 -0.02 1.39 16 30 H 0.06 0.68 5.97 -51.93 -0.31 0.37 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.41 1.18 9.10 45.56 0.41 1.60 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.83 5.58 -51.93 -0.29 0.54 16 38 H 0.39 5.45 6.29 -40.82 -0.26 5.20 16 39 H 0.10 2.53 6.43 -52.49 -0.34 2.19 16 40 H 0.12 3.27 6.36 -52.48 -0.33 2.94 16 41 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 42 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 43 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.10 1.28 7.03 -51.93 -0.36 0.92 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -32.79 363.70 -9.12 -41.91 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.16 Total: 11.12 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.76 Total: -9.35 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.11 Total: -40.42 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.77 Total: -22.62 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.79 -9.12 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263166201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.975 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds