Wall clock time and date at job start Tue Mar 31 2020 17:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.50145 * 2 1 4 4 C 1.53039 * 109.49971 * 239.93667 * 2 1 3 5 5 C 1.53038 * 109.52534 * 301.42062 * 4 2 1 6 6 H 1.08999 * 109.49965 * 58.57817 * 5 4 2 7 7 C 1.50705 * 109.49760 * 178.67254 * 5 4 2 8 8 O 1.20825 * 120.00137 * 0.02562 * 7 5 4 9 9 O 1.34232 * 120.00263 * 179.97438 * 7 5 4 10 10 C 1.53195 * 109.31587 * 298.61222 * 5 4 2 11 11 N 1.46921 * 108.76249 * 54.65271 * 10 5 4 12 12 C 1.34783 * 120.62970 * 126.40975 * 11 10 5 13 13 O 1.21583 * 119.99941 * 175.83811 * 12 11 10 14 14 N 1.34774 * 119.99616 * 355.83234 * 12 11 10 15 15 C 1.39247 * 119.99680 * 187.56171 * 14 12 11 16 16 C 1.39480 * 119.83368 * 32.96224 * 15 14 12 17 17 C 1.36375 * 120.16608 * 179.76067 * 16 15 14 18 18 C 1.40868 * 119.82980 * 0.51167 * 17 16 15 19 19 C 1.41151 * 120.16281 * 179.72115 * 18 17 16 20 20 H 1.08007 * 119.99883 * 209.47090 * 19 18 17 21 21 C 1.39892 * 120.00138 * 29.47511 * 19 18 17 22 22 N 1.30877 * 119.99884 * 13.17274 * 21 19 18 23 23 Si 1.86805 * 120.00138 * 193.17097 * 21 19 18 24 24 H 1.48509 * 109.46828 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47207 * 119.99498 * 23 21 19 26 26 H 1.48495 * 109.47569 * 240.00257 * 23 21 19 27 27 C 1.40870 * 119.67250 * 359.74165 * 18 17 16 28 28 C 1.36376 * 119.82737 * 0.02562 * 27 18 17 29 29 C 1.46927 * 118.74137 * 306.38790 * 11 10 5 30 30 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46949 * 300.06405 * 1 2 3 32 32 H 1.08996 * 109.46968 * 60.06467 * 1 2 3 33 33 H 1.08998 * 109.46091 * 61.43179 * 4 2 1 34 34 H 1.08994 * 109.46243 * 181.40679 * 4 2 1 35 35 H 0.96693 * 117.00216 * 180.02562 * 9 7 5 36 36 H 1.09000 * 109.59476 * 294.87034 * 10 5 4 37 37 H 1.08993 * 109.70643 * 174.50628 * 10 5 4 38 38 H 0.96998 * 120.00260 * 7.57100 * 14 12 11 39 39 H 1.08000 * 119.91069 * 0.02562 * 16 15 14 40 40 H 1.08003 * 120.08164 * 180.25222 * 17 16 15 41 41 H 0.97009 * 119.99767 * 179.97438 * 22 21 19 42 42 H 1.07995 * 120.08715 * 179.97438 * 27 18 17 43 43 H 1.07994 * 119.91515 * 180.02562 * 28 27 18 44 44 H 1.08997 * 109.58803 * 293.82196 * 29 11 10 45 45 H 1.09003 * 109.58454 * 173.39167 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 1.5028 -2.1552 -1.2664 6 1 0.4130 -2.1348 -1.2544 7 6 1.9795 -2.8561 -2.5125 8 8 2.6785 -2.2704 -3.3052 9 8 1.6285 -4.1313 -2.7414 10 6 2.0140 -2.9040 -0.0316 11 7 1.6516 -2.1385 1.1689 12 6 0.9748 -2.7228 2.1775 13 8 0.7469 -2.1009 3.1971 14 7 0.5508 -3.9962 2.0557 15 6 -0.2810 -4.5488 3.0262 16 6 -1.2045 -3.7414 3.6900 17 6 -2.0258 -4.2765 4.6382 18 6 -1.9322 -5.6461 4.9541 19 6 -2.7748 -6.2061 5.9385 20 1 -2.4385 -7.0524 6.5192 21 6 -4.0453 -5.6649 6.1618 22 7 -4.5570 -4.8203 5.3030 23 14 -5.0116 -6.1480 7.6858 24 1 -4.2176 -7.1109 8.4907 25 1 -5.2929 -4.9370 8.4980 26 1 -6.2923 -6.7806 7.2802 27 6 -0.9934 -6.4540 4.2831 28 6 -0.1821 -5.9057 3.3339 29 6 2.0414 -0.7242 1.2493 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.6988 -0.1952 -2.1389 34 1 3.1305 -0.7442 -1.2354 35 1 1.9588 -4.5386 -3.5538 36 1 3.0980 -3.0042 -0.0877 37 1 1.5575 -3.8927 0.0138 38 1 0.8250 -4.5279 1.2922 39 1 -1.2722 -2.6907 3.4494 40 1 -2.7432 -3.6509 5.1484 41 1 -5.4382 -4.4453 5.4577 42 1 -0.9156 -7.5047 4.5203 43 1 0.5379 -6.5238 2.8183 44 1 3.1275 -0.6466 1.2978 45 1 1.6007 -0.2738 2.1388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263166201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:53 Heat of formation + Delta-G solvation = -115.064991 kcal Electronic energy + Delta-G solvation = -28678.318755 eV Core-core repulsion = 24659.612818 eV Total energy + Delta-G solvation = -4018.705937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.10520 -41.19336 -39.66832 -38.53350 -37.10984 -36.22472 -35.09357 -34.13120 -33.15465 -31.39274 -30.73852 -28.07739 -27.17927 -26.01301 -25.76205 -23.25720 -23.01427 -22.23904 -21.10829 -19.86920 -19.47106 -19.18002 -18.99420 -18.06645 -17.66707 -17.14026 -17.00935 -16.42924 -16.09243 -15.72634 -15.46838 -15.15338 -15.09912 -14.87279 -14.57158 -14.48411 -14.37735 -14.01545 -13.90141 -13.61909 -13.25920 -13.16680 -12.88231 -12.81282 -12.71717 -12.53769 -12.36513 -12.30428 -11.98803 -11.85374 -11.68564 -11.55236 -11.53589 -11.44299 -11.20008 -10.94698 -10.67603 -9.71281 -9.42078 -8.74482 -8.52713 -6.24365 0.87652 1.11404 1.17064 1.40052 1.46839 1.55116 1.62794 2.09073 2.18879 2.24674 2.82020 2.97122 3.44541 3.62815 3.76291 3.81807 3.90365 4.09504 4.22682 4.33096 4.45244 4.46100 4.48971 4.60412 4.66931 4.70665 4.82558 4.90686 4.98519 5.07311 5.10590 5.11848 5.19032 5.19844 5.32270 5.35348 5.45958 5.54096 5.61123 5.67399 5.79743 6.06774 6.14300 6.15338 6.39220 6.72244 6.97832 6.98378 7.00350 7.05124 7.63306 8.41084 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.002669 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.848039 B =10488.677159 C =11050.279433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.112 0.888 4 C -0.091 4.091 5 C -0.097 4.097 6 H 0.116 0.884 7 C 0.497 3.503 8 O -0.539 6.539 9 O -0.511 6.511 10 C 0.122 3.878 11 N -0.618 5.618 12 C 0.698 3.302 13 O -0.618 6.618 14 N -0.660 5.660 15 C 0.036 3.964 16 C -0.101 4.101 17 C -0.169 4.169 18 C 0.072 3.928 19 C -0.497 4.497 20 H 0.078 0.922 21 C 0.030 3.970 22 N -0.835 5.835 23 Si 0.983 3.017 24 H -0.256 1.256 25 H -0.269 1.269 26 H -0.265 1.265 27 C -0.216 4.216 28 C -0.104 4.104 29 C 0.125 3.875 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.430 0.570 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.410 0.590 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.285 0.715 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.088 0.912 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 5.174 -16.370 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 H 0.130 0.870 4 C -0.129 4.129 5 C -0.117 4.117 6 H 0.134 0.866 7 C 0.340 3.660 8 O -0.429 6.429 9 O -0.324 6.324 10 C -0.001 4.001 11 N -0.355 5.355 12 C 0.401 3.599 13 O -0.498 6.498 14 N -0.310 5.310 15 C -0.058 4.058 16 C -0.122 4.122 17 C -0.189 4.189 18 C 0.069 3.931 19 C -0.527 4.527 20 H 0.096 0.904 21 C -0.183 4.183 22 N -0.462 5.462 23 Si 0.804 3.196 24 H -0.180 1.180 25 H -0.194 1.194 26 H -0.190 1.190 27 C -0.236 4.236 28 C -0.125 4.125 29 C 0.003 3.997 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.292 0.708 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.250 0.750 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.152 0.848 44 H 0.106 0.894 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.964 6.102 -15.590 20.577 hybrid contribution -0.553 -0.541 -0.182 0.794 sum 11.411 5.561 -15.772 20.246 Atomic orbital electron populations 1.21857 0.95593 1.01237 1.01924 1.21508 0.95805 1.00694 0.93363 0.86987 1.21425 1.01703 0.91458 0.98298 1.21494 1.04016 0.96465 0.89723 0.86574 1.23191 0.75852 0.79958 0.87010 1.90727 1.36764 1.67083 1.48332 1.84524 1.71758 1.27064 1.49089 1.21648 1.01844 0.94708 0.81939 1.47159 1.59137 1.12245 1.16989 1.16021 0.78551 0.82000 0.83363 1.90906 1.63481 1.64878 1.30487 1.42107 1.50736 1.12261 1.25866 1.17041 0.96859 0.92945 0.98968 1.20418 0.95321 0.98006 0.98417 1.20816 1.01045 0.95514 1.01544 1.17979 0.91886 0.91439 0.91794 1.19781 0.99656 1.15048 1.18264 0.90377 1.26752 0.98734 0.93357 0.99503 1.69911 1.16820 1.25238 1.34240 0.85151 0.77892 0.79035 0.77553 1.17976 1.19439 1.19026 1.20845 1.02869 0.98737 1.01104 1.20351 1.00118 0.93173 0.98836 1.21731 1.00386 0.78512 0.99089 0.94087 0.93740 0.91054 0.90143 0.89904 0.70790 0.88666 0.88543 0.75014 0.89096 0.88933 0.90502 0.87105 0.84794 0.89426 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.70 71.98 0.63 -2.19 16 2 C -0.09 -1.42 3.21 -10.72 -0.03 -1.46 16 3 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.09 -1.23 4.01 30.62 0.12 -1.11 16 5 C -0.10 -1.41 2.44 -11.46 -0.03 -1.44 16 6 H 0.12 1.83 6.33 -2.39 -0.02 1.82 16 7 C 0.50 7.40 7.63 71.24 0.54 7.94 16 8 O -0.54 -10.91 16.74 21.97 0.37 -10.54 16 9 O -0.51 -5.49 13.35 -51.44 -0.69 -6.18 16 10 C 0.12 1.94 5.64 86.36 0.49 2.42 16 11 N -0.62 -14.48 2.41 -836.92 -2.02 -16.50 16 12 C 0.70 24.06 7.99 179.05 1.43 25.49 16 13 O -0.62 -27.60 13.50 -3.98 -0.05 -27.65 16 14 N -0.66 -22.16 5.22 -316.78 -1.65 -23.81 16 15 C 0.04 1.57 6.29 38.56 0.24 1.81 16 16 C -0.10 -5.20 8.57 22.13 0.19 -5.01 16 17 C -0.17 -9.52 8.60 22.48 0.19 -9.32 16 18 C 0.07 3.95 5.53 -21.28 -0.12 3.84 16 19 C -0.50 -27.36 9.03 23.39 0.21 -27.15 16 20 H 0.08 4.10 7.88 -2.91 -0.02 4.08 16 21 C 0.03 1.55 5.20 85.24 0.44 1.99 16 22 N -0.84 -45.55 11.02 21.82 0.24 -45.31 16 23 Si 0.98 39.54 29.58 68.60 2.03 41.57 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 26 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 27 C -0.22 -10.35 9.74 22.48 0.22 -10.13 16 28 C -0.10 -4.37 9.89 22.14 0.22 -4.15 16 29 C 0.13 2.53 5.82 86.36 0.50 3.03 16 30 H 0.04 0.92 5.97 -2.39 -0.01 0.90 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.08 8.07 -2.39 -0.02 1.06 16 34 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 35 H 0.43 1.12 9.10 -74.06 -0.67 0.45 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.43 5.58 -2.39 -0.01 1.42 16 38 H 0.41 10.28 6.29 -92.71 -0.58 9.70 16 39 H 0.09 4.79 6.43 -2.91 -0.02 4.77 16 40 H 0.09 5.55 6.36 -2.91 -0.02 5.53 16 41 H 0.28 14.09 8.30 -92.70 -0.77 13.32 16 42 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 43 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.07 1.91 7.03 -2.39 -0.02 1.89 16 Total: -1.00 -74.73 363.70 3.27 -71.46 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.21 Total: 32.40 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 5.25 Total: -15.43 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -3.43 Total: -85.62 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.37 Total: -44.37 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -74.73 3.27 -71.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263166201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.609 kcal (2) G-P(sol) polarization free energy of solvation -74.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds