Wall clock time and date at job start Tue Mar 31 2020 17:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.50348 * 2 1 4 4 C 1.53038 * 109.52404 * 120.08754 * 2 1 3 5 5 C 1.53040 * 109.53789 * 181.33079 * 4 2 1 6 6 H 1.09002 * 109.52426 * 58.59723 * 5 4 2 7 7 C 1.50700 * 109.49856 * 178.68228 * 5 4 2 8 8 O 1.20829 * 120.00023 * 359.83470 * 7 5 4 9 9 O 1.34231 * 119.99910 * 179.83931 * 7 5 4 10 10 C 1.53198 * 109.31294 * 298.63269 * 5 4 2 11 11 N 1.46925 * 108.77248 * 54.63486 * 10 5 4 12 12 C 1.34777 * 120.63017 * 126.41725 * 11 10 5 13 13 O 1.21578 * 120.00354 * 176.06281 * 12 11 10 14 14 N 1.34777 * 119.99822 * 356.05746 * 12 11 10 15 15 C 1.39245 * 119.99787 * 187.49618 * 14 12 11 16 16 C 1.39478 * 119.83397 * 32.89137 * 15 14 12 17 17 C 1.36370 * 120.16743 * 179.76044 * 16 15 14 18 18 C 1.40877 * 119.82974 * 0.51061 * 17 16 15 19 19 C 1.41156 * 120.16435 * 179.76139 * 18 17 16 20 20 H 1.08000 * 119.99495 * 208.84823 * 19 18 17 21 21 C 1.39894 * 120.00083 * 28.85574 * 19 18 17 22 22 N 1.30881 * 119.99758 * 14.35338 * 21 19 18 23 23 Si 1.86799 * 119.99971 * 194.35435 * 21 19 18 24 24 H 1.48505 * 109.47039 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47091 * 119.99699 * 23 21 19 26 26 H 1.48496 * 109.47314 * 240.00005 * 23 21 19 27 27 C 1.40870 * 119.66896 * 359.74441 * 18 17 16 28 28 C 1.36368 * 119.82892 * 359.97438 * 27 18 17 29 29 C 1.46927 * 118.74135 * 306.39132 * 11 10 5 30 30 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46628 * 299.99704 * 1 2 3 32 32 H 1.08999 * 109.46874 * 59.99332 * 1 2 3 33 33 H 1.09002 * 109.46216 * 301.34866 * 4 2 1 34 34 H 1.08992 * 109.46509 * 61.31082 * 4 2 1 35 35 H 0.96707 * 116.99826 * 180.02562 * 9 7 5 36 36 H 1.08998 * 109.58424 * 294.85010 * 10 5 4 37 37 H 1.08997 * 109.70038 * 174.49087 * 10 5 4 38 38 H 0.96996 * 120.00433 * 7.49847 * 14 12 11 39 39 H 1.07993 * 119.91792 * 0.02562 * 16 15 14 40 40 H 1.08001 * 120.08866 * 180.25127 * 17 16 15 41 41 H 0.97008 * 119.99600 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.08553 * 180.02562 * 27 18 17 43 43 H 1.08004 * 119.91619 * 180.02562 * 28 27 18 44 44 H 1.09002 * 109.58728 * 293.82508 * 29 11 10 45 45 H 1.09000 * 109.58485 * 173.39807 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7231 1.2480 5 6 3.5715 -0.6944 1.2653 6 1 3.9166 0.3395 1.2537 7 6 4.0734 -1.3783 2.5108 8 8 3.2882 -1.8388 3.3053 9 8 5.3929 -1.4758 2.7376 10 6 4.1059 -1.4256 0.0297 11 7 3.5046 -0.8281 -1.1703 12 6 4.2806 -0.3849 -2.1792 13 8 3.7700 0.0417 -3.1967 14 7 5.6228 -0.4145 -2.0601 15 6 6.4213 0.1840 -3.0312 16 6 5.9701 1.3255 -3.6936 17 6 6.7486 1.9200 -4.6423 18 6 8.0069 1.3720 -4.9605 19 6 8.8163 1.9787 -5.9449 20 1 9.5069 1.3800 -6.5202 21 6 8.7240 3.3555 -6.1753 22 7 8.1116 4.1240 -5.3108 23 14 9.4747 4.0969 -7.7168 24 1 10.1047 3.0231 -8.5263 25 1 8.4124 4.7595 -8.5153 26 1 10.5034 5.0974 -7.3345 27 6 8.4533 0.2158 -4.2909 28 6 7.6661 -0.3642 -3.3404 29 6 2.0412 -0.7234 -1.2499 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6589 -0.2248 2.1388 34 1 1.6979 -1.7574 1.2350 35 1 5.6668 -1.9234 3.5498 36 1 3.8386 -2.4809 0.0856 37 1 5.1903 -1.3253 -0.0162 38 1 6.0325 -0.8528 -1.2979 39 1 5.0036 1.7421 -3.4515 40 1 6.3997 2.8062 -5.1516 41 1 8.0473 5.0786 -5.4708 42 1 9.4170 -0.2097 -4.5292 43 1 8.0072 -1.2504 -2.8259 44 1 1.6055 -1.7214 -1.2983 45 1 1.7632 -0.1575 -2.1390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263166202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:08 Heat of formation + Delta-G solvation = -98.781409 kcal Electronic energy + Delta-G solvation = -28359.558401 eV Core-core repulsion = 24341.558573 eV Total energy + Delta-G solvation = -4017.999828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.09745 -40.10990 -38.26821 -37.05236 -36.42739 -34.60042 -33.94967 -32.70477 -32.50685 -29.48344 -28.97260 -27.06332 -25.95374 -24.93861 -24.34164 -21.52483 -21.33298 -21.00833 -20.23798 -19.22201 -18.35382 -18.16361 -17.26855 -16.77917 -16.65958 -16.06212 -15.48879 -15.16828 -14.95349 -14.85802 -14.48753 -14.01730 -13.92388 -13.54402 -13.40426 -13.04583 -12.88527 -12.67598 -12.35738 -12.25012 -12.03575 -11.90193 -11.77381 -11.67333 -11.37944 -11.25018 -11.11941 -11.08329 -11.03208 -10.96240 -10.74951 -10.64608 -9.92640 -9.67878 -9.48405 -9.14781 -8.92217 -8.65647 -7.50050 -6.91161 -6.67192 -4.26625 1.79669 2.52326 2.69077 2.89832 3.08147 3.10856 3.15668 3.16595 3.63907 3.97922 4.10760 4.18856 4.37655 4.51951 4.62063 4.69879 4.79916 5.01372 5.06104 5.20483 5.30138 5.34979 5.43764 5.48756 5.64248 5.70180 5.72762 5.86761 5.91513 6.07417 6.14324 6.16127 6.35587 6.42123 6.80975 6.82707 7.07152 7.12813 7.28306 7.32557 7.52226 7.64362 7.80758 8.00365 8.09468 8.28747 8.41764 8.66577 8.92471 8.93080 9.08595 10.25918 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.002600 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.418339 B =10765.943482 C =11556.756135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.079 0.921 4 C -0.097 4.097 5 C -0.097 4.097 6 H 0.117 0.883 7 C 0.488 3.512 8 O -0.513 6.513 9 O -0.512 6.512 10 C 0.125 3.875 11 N -0.633 5.633 12 C 0.700 3.300 13 O -0.569 6.569 14 N -0.666 5.666 15 C 0.018 3.982 16 C -0.088 4.088 17 C -0.147 4.147 18 C 0.105 3.895 19 C -0.462 4.462 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.798 5.798 23 Si 0.908 3.092 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.275 1.275 27 C -0.210 4.210 28 C -0.109 4.109 29 C 0.132 3.868 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.390 0.610 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.279 0.721 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.643 -8.403 14.618 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.098 0.902 4 C -0.135 4.135 5 C -0.118 4.118 6 H 0.135 0.865 7 C 0.329 3.671 8 O -0.400 6.400 9 O -0.324 6.324 10 C 0.000 4.000 11 N -0.372 5.372 12 C 0.402 3.598 13 O -0.446 6.446 14 N -0.314 5.314 15 C -0.075 4.075 16 C -0.109 4.109 17 C -0.167 4.167 18 C 0.102 3.898 19 C -0.492 4.492 20 H 0.095 0.905 21 C -0.143 4.143 22 N -0.424 5.424 23 Si 0.733 3.267 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.201 1.201 27 C -0.230 4.230 28 C -0.130 4.130 29 C 0.009 3.991 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.271 0.729 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.226 0.774 39 H 0.120 0.880 40 H 0.135 0.865 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.409 -7.752 13.749 18.907 hybrid contribution 0.831 -0.099 0.548 1.000 sum -9.578 -7.851 14.297 18.915 Atomic orbital electron populations 1.21726 0.93789 1.02226 1.02333 1.21557 0.96411 1.00441 0.94310 0.90238 1.21507 0.90903 1.02360 0.98696 1.21507 0.98237 1.01885 0.90142 0.86511 1.23318 0.79999 0.76311 0.87474 1.90727 1.56936 1.45062 1.47314 1.84569 1.26089 1.73900 1.47865 1.21422 0.98646 0.96713 0.83185 1.47244 1.06534 1.65937 1.17478 1.15864 0.81756 0.79203 0.82933 1.90926 1.72911 1.52490 1.28232 1.42325 1.03691 1.59289 1.26106 1.16997 0.93365 0.97536 0.99586 1.20412 0.98847 0.93700 0.97892 1.20936 0.93989 1.01563 1.00187 1.17660 0.91103 0.90480 0.90535 1.19534 1.19834 0.92639 1.17167 0.90459 1.25885 0.94116 0.97498 0.96802 1.69843 1.34013 1.06116 1.32418 0.86271 0.79286 0.79333 0.81852 1.18489 1.19792 1.20091 1.20560 0.99539 1.01924 1.01012 1.19992 0.94704 0.98582 0.99675 1.21547 0.78070 1.00596 0.98873 0.92346 0.92231 0.91947 0.90575 0.90654 0.72947 0.90866 0.89036 0.77449 0.88031 0.86476 0.91031 0.88588 0.89242 0.91751 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.11 -0.94 2.87 -90.50 -0.26 -1.20 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.10 -0.81 3.75 -26.69 -0.10 -0.91 16 5 C -0.10 -0.84 2.78 -91.65 -0.25 -1.10 16 6 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 7 C 0.49 4.33 7.63 36.01 0.27 4.60 16 8 O -0.51 -5.87 16.74 -18.75 -0.31 -6.18 16 9 O -0.51 -3.55 13.35 -39.26 -0.52 -4.07 16 10 C 0.13 1.19 5.63 -3.71 -0.02 1.17 16 11 N -0.63 -8.11 2.97 -178.50 -0.53 -8.64 16 12 C 0.70 12.45 7.99 -86.92 -0.69 11.76 16 13 O -0.57 -12.57 13.49 5.30 0.07 -12.50 16 14 N -0.67 -11.80 5.22 -14.10 -0.07 -11.87 16 15 C 0.02 0.39 6.29 -83.57 -0.53 -0.13 16 16 C -0.09 -2.20 8.57 -39.79 -0.34 -2.54 16 17 C -0.15 -3.94 8.60 -39.26 -0.34 -4.27 16 18 C 0.10 2.81 5.53 -106.80 -0.59 2.22 16 19 C -0.46 -12.30 9.03 -37.86 -0.34 -12.65 16 20 H 0.08 1.98 7.89 -52.49 -0.41 1.56 16 21 C 0.07 1.87 5.17 -17.34 -0.09 1.78 16 22 N -0.80 -20.90 11.04 55.55 0.61 -20.29 16 23 Si 0.91 18.90 29.58 -169.99 -5.03 13.87 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 27 C -0.21 -5.09 9.74 -39.26 -0.38 -5.47 16 28 C -0.11 -2.38 9.89 -39.79 -0.39 -2.78 16 29 C 0.13 1.46 5.71 -3.71 -0.02 1.44 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 35 H 0.41 1.16 9.10 45.56 0.41 1.58 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.84 5.58 -51.93 -0.29 0.55 16 38 H 0.39 5.49 6.29 -40.82 -0.26 5.23 16 39 H 0.10 2.55 6.43 -52.49 -0.34 2.21 16 40 H 0.12 3.27 6.35 -52.49 -0.33 2.93 16 41 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 42 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 1.30 7.03 -51.93 -0.36 0.94 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -32.95 368.37 -9.33 -42.29 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.36 Total: 10.59 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -3.74 Total: -8.75 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.01 Total: -40.79 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.77 Total: -22.76 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.95 -9.33 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263166202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.493 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds