Wall clock time and date at job start Tue Mar 31 2020 17:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.50348 * 2 1 4 4 C 1.53038 * 109.52404 * 120.08754 * 2 1 3 5 5 C 1.53040 * 109.53789 * 181.33079 * 4 2 1 6 6 H 1.09002 * 109.52426 * 58.59723 * 5 4 2 7 7 C 1.50700 * 109.49856 * 178.68228 * 5 4 2 8 8 O 1.20829 * 120.00023 * 359.83470 * 7 5 4 9 9 O 1.34231 * 119.99910 * 179.83931 * 7 5 4 10 10 C 1.53198 * 109.31294 * 298.63269 * 5 4 2 11 11 N 1.46925 * 108.77248 * 54.63486 * 10 5 4 12 12 C 1.34777 * 120.63017 * 126.41725 * 11 10 5 13 13 O 1.21578 * 120.00354 * 176.06281 * 12 11 10 14 14 N 1.34777 * 119.99822 * 356.05746 * 12 11 10 15 15 C 1.39245 * 119.99787 * 187.49618 * 14 12 11 16 16 C 1.39478 * 119.83397 * 32.89137 * 15 14 12 17 17 C 1.36370 * 120.16743 * 179.76044 * 16 15 14 18 18 C 1.40877 * 119.82974 * 0.51061 * 17 16 15 19 19 C 1.41156 * 120.16435 * 179.76139 * 18 17 16 20 20 H 1.08000 * 119.99495 * 208.84823 * 19 18 17 21 21 C 1.39894 * 120.00083 * 28.85574 * 19 18 17 22 22 N 1.30881 * 119.99758 * 14.35338 * 21 19 18 23 23 Si 1.86799 * 119.99971 * 194.35435 * 21 19 18 24 24 H 1.48505 * 109.47039 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47091 * 119.99699 * 23 21 19 26 26 H 1.48496 * 109.47314 * 240.00005 * 23 21 19 27 27 C 1.40870 * 119.66896 * 359.74441 * 18 17 16 28 28 C 1.36368 * 119.82892 * 359.97438 * 27 18 17 29 29 C 1.46927 * 118.74135 * 306.39132 * 11 10 5 30 30 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46628 * 299.99704 * 1 2 3 32 32 H 1.08999 * 109.46874 * 59.99332 * 1 2 3 33 33 H 1.09002 * 109.46216 * 301.34866 * 4 2 1 34 34 H 1.08992 * 109.46509 * 61.31082 * 4 2 1 35 35 H 0.96707 * 116.99826 * 180.02562 * 9 7 5 36 36 H 1.08998 * 109.58424 * 294.85010 * 10 5 4 37 37 H 1.08997 * 109.70038 * 174.49087 * 10 5 4 38 38 H 0.96996 * 120.00433 * 7.49847 * 14 12 11 39 39 H 1.07993 * 119.91792 * 0.02562 * 16 15 14 40 40 H 1.08001 * 120.08866 * 180.25127 * 17 16 15 41 41 H 0.97008 * 119.99600 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.08553 * 180.02562 * 27 18 17 43 43 H 1.08004 * 119.91619 * 180.02562 * 28 27 18 44 44 H 1.09002 * 109.58728 * 293.82508 * 29 11 10 45 45 H 1.09000 * 109.58485 * 173.39807 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7231 1.2480 5 6 3.5715 -0.6944 1.2653 6 1 3.9166 0.3395 1.2537 7 6 4.0734 -1.3783 2.5108 8 8 3.2882 -1.8388 3.3053 9 8 5.3929 -1.4758 2.7376 10 6 4.1059 -1.4256 0.0297 11 7 3.5046 -0.8281 -1.1703 12 6 4.2806 -0.3849 -2.1792 13 8 3.7700 0.0417 -3.1967 14 7 5.6228 -0.4145 -2.0601 15 6 6.4213 0.1840 -3.0312 16 6 5.9701 1.3255 -3.6936 17 6 6.7486 1.9200 -4.6423 18 6 8.0069 1.3720 -4.9605 19 6 8.8163 1.9787 -5.9449 20 1 9.5069 1.3800 -6.5202 21 6 8.7240 3.3555 -6.1753 22 7 8.1116 4.1240 -5.3108 23 14 9.4747 4.0969 -7.7168 24 1 10.1047 3.0231 -8.5263 25 1 8.4124 4.7595 -8.5153 26 1 10.5034 5.0974 -7.3345 27 6 8.4533 0.2158 -4.2909 28 6 7.6661 -0.3642 -3.3404 29 6 2.0412 -0.7234 -1.2499 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6589 -0.2248 2.1388 34 1 1.6979 -1.7574 1.2350 35 1 5.6668 -1.9234 3.5498 36 1 3.8386 -2.4809 0.0856 37 1 5.1903 -1.3253 -0.0162 38 1 6.0325 -0.8528 -1.2979 39 1 5.0036 1.7421 -3.4515 40 1 6.3997 2.8062 -5.1516 41 1 8.0473 5.0786 -5.4708 42 1 9.4170 -0.2097 -4.5292 43 1 8.0072 -1.2504 -2.8259 44 1 1.6055 -1.7214 -1.2983 45 1 1.7632 -0.1575 -2.1390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263166202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:01 Heat of formation + Delta-G solvation = -119.294147 kcal Electronic energy + Delta-G solvation = -28360.447900 eV Core-core repulsion = 24341.558573 eV Total energy + Delta-G solvation = -4018.889327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 8.07 seconds Orbital eigenvalues (eV) -42.04113 -41.20763 -39.61158 -38.48848 -37.11543 -36.24165 -35.20260 -34.25141 -33.36788 -31.39650 -30.76657 -27.90181 -27.18989 -26.02909 -25.56953 -23.23218 -22.83542 -21.93869 -21.29842 -20.50079 -19.46157 -19.17536 -19.01320 -18.08914 -17.43258 -17.15184 -16.97398 -16.46364 -16.14402 -15.93275 -15.72599 -15.26835 -15.08824 -14.82420 -14.52683 -14.31250 -14.25793 -13.91335 -13.70395 -13.57036 -13.27893 -13.05116 -12.96090 -12.86535 -12.78282 -12.54857 -12.39273 -12.35933 -12.00111 -11.88896 -11.70199 -11.62962 -11.51711 -11.47408 -11.21838 -10.96465 -10.68989 -9.75998 -9.42441 -8.76079 -8.53649 -6.24152 0.87033 1.10330 1.16935 1.40035 1.46432 1.55230 1.59998 2.06957 2.16450 2.24306 2.81179 2.95573 3.42701 3.62571 3.76045 3.80757 3.84619 4.08149 4.29143 4.36321 4.39513 4.45744 4.48785 4.61129 4.66198 4.67271 4.82072 4.87848 4.98630 5.02816 5.10688 5.15754 5.19030 5.28077 5.31600 5.36396 5.45307 5.51788 5.60100 5.66228 5.78755 6.05765 6.13746 6.14617 6.38724 6.71810 6.97202 6.97605 6.98525 7.04756 7.60832 8.40115 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.002600 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.418339 B =10765.943482 C =11556.756135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.066 0.934 4 C -0.091 4.091 5 C -0.095 4.095 6 H 0.116 0.884 7 C 0.498 3.502 8 O -0.539 6.539 9 O -0.510 6.510 10 C 0.122 3.878 11 N -0.622 5.622 12 C 0.697 3.303 13 O -0.618 6.618 14 N -0.658 5.658 15 C 0.034 3.966 16 C -0.101 4.101 17 C -0.170 4.170 18 C 0.072 3.928 19 C -0.497 4.497 20 H 0.079 0.921 21 C 0.030 3.970 22 N -0.833 5.833 23 Si 0.982 3.018 24 H -0.256 1.256 25 H -0.269 1.269 26 H -0.265 1.265 27 C -0.217 4.217 28 C -0.103 4.103 29 C 0.128 3.872 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.430 0.570 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.411 0.589 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.285 0.715 42 H 0.111 0.889 43 H 0.135 0.865 44 H 0.085 0.915 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 -10.146 16.289 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.084 0.916 4 C -0.129 4.129 5 C -0.115 4.115 6 H 0.134 0.866 7 C 0.341 3.659 8 O -0.429 6.429 9 O -0.323 6.323 10 C -0.001 4.001 11 N -0.359 5.359 12 C 0.399 3.601 13 O -0.498 6.498 14 N -0.308 5.308 15 C -0.060 4.060 16 C -0.122 4.122 17 C -0.190 4.190 18 C 0.070 3.930 19 C -0.527 4.527 20 H 0.097 0.903 21 C -0.183 4.183 22 N -0.460 5.460 23 Si 0.803 3.197 24 H -0.180 1.180 25 H -0.194 1.194 26 H -0.190 1.190 27 C -0.237 4.237 28 C -0.123 4.123 29 C 0.005 3.995 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.293 0.707 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.251 0.749 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.153 0.847 44 H 0.103 0.897 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.124 -9.544 15.511 20.837 hybrid contribution 0.654 0.323 0.204 0.758 sum -9.469 -9.221 15.715 20.534 Atomic orbital electron populations 1.21712 0.92375 1.03061 1.02625 1.21461 0.97496 0.99392 0.93443 0.91550 1.21460 0.90652 1.02558 0.98225 1.21441 0.98496 1.01755 0.89798 0.86586 1.23131 0.80305 0.75535 0.86939 1.90731 1.57714 1.46267 1.48184 1.84526 1.24852 1.73836 1.49136 1.21661 0.98935 0.97679 0.81868 1.47216 1.06897 1.64611 1.17146 1.16045 0.81802 0.78888 0.83334 1.90905 1.73742 1.54514 1.30650 1.42094 1.03603 1.59154 1.25965 1.17039 0.93770 0.96160 0.99059 1.20421 0.98323 0.95016 0.98425 1.20806 0.94962 1.01684 1.01592 1.17984 0.91293 0.92033 0.91737 1.19785 1.20880 0.93690 1.18351 0.90329 1.26759 0.94364 0.97512 0.99689 1.69915 1.35262 1.06646 1.34201 0.85156 0.78495 0.78487 0.77527 1.17961 1.19441 1.18991 1.20841 1.00511 1.01171 1.01144 1.20348 0.93827 0.99392 0.98765 1.21724 0.77041 1.01673 0.99021 0.91237 0.91239 0.92405 0.90191 0.90082 0.70736 0.88719 0.88337 0.74944 0.89110 0.88951 0.90457 0.87068 0.84749 0.89690 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.20 71.98 0.66 -1.12 16 2 C -0.10 -1.59 2.87 -10.72 -0.03 -1.62 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.09 -1.30 3.75 30.62 0.11 -1.18 16 5 C -0.09 -1.39 2.78 -11.46 -0.03 -1.43 16 6 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 7 C 0.50 7.43 7.63 71.24 0.54 7.97 16 8 O -0.54 -10.98 16.74 21.96 0.37 -10.61 16 9 O -0.51 -5.42 13.35 -51.43 -0.69 -6.11 16 10 C 0.12 1.96 5.63 86.36 0.49 2.45 16 11 N -0.62 -14.95 2.97 -836.91 -2.49 -17.44 16 12 C 0.70 24.35 7.99 179.05 1.43 25.78 16 13 O -0.62 -27.92 13.49 -3.96 -0.05 -27.98 16 14 N -0.66 -22.21 5.22 -316.78 -1.65 -23.86 16 15 C 0.03 1.48 6.29 38.56 0.24 1.72 16 16 C -0.10 -5.22 8.57 22.13 0.19 -5.03 16 17 C -0.17 -9.59 8.60 22.48 0.19 -9.40 16 18 C 0.07 3.98 5.53 -21.27 -0.12 3.86 16 19 C -0.50 -27.30 9.03 23.39 0.21 -27.09 16 20 H 0.08 4.12 7.89 -2.91 -0.02 4.10 16 21 C 0.03 1.57 5.17 85.24 0.44 2.01 16 22 N -0.83 -45.38 11.04 21.82 0.24 -45.14 16 23 Si 0.98 39.45 29.58 68.60 2.03 41.48 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 26 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 27 C -0.22 -10.40 9.74 22.48 0.22 -10.18 16 28 C -0.10 -4.30 9.89 22.13 0.22 -4.08 16 29 C 0.13 2.69 5.71 86.36 0.49 3.18 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 34 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 35 H 0.43 1.06 9.10 -74.05 -0.67 0.39 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 1.46 5.58 -2.39 -0.01 1.44 16 38 H 0.41 10.29 6.29 -92.71 -0.58 9.71 16 39 H 0.09 4.79 6.43 -2.91 -0.02 4.77 16 40 H 0.09 5.53 6.35 -2.91 -0.02 5.51 16 41 H 0.29 14.08 8.30 -92.70 -0.77 13.31 16 42 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 43 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.95 7.03 -2.39 -0.02 1.94 16 Total: -1.00 -74.66 368.37 2.81 -71.85 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.22 Total: 31.96 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 5.27 Total: -14.16 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -3.90 Total: -86.44 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.37 Total: -44.69 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -74.66 2.81 -71.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263166202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.441 kcal (2) G-P(sol) polarization free energy of solvation -74.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.07 seconds