Wall clock time and date at job start Tue Mar 31 2020 18:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47453 * 2 1 4 4 C 1.50700 * 109.46996 * 239.99800 * 2 1 3 5 5 H 1.08000 * 120.00312 * 240.00330 * 4 2 1 6 6 C 1.37884 * 119.99965 * 60.00134 * 4 2 1 7 7 N 1.31518 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47128 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47370 * 120.00024 * 8 6 4 11 11 H 1.48500 * 109.47196 * 240.00176 * 8 6 4 12 12 N 1.46499 * 109.47078 * 120.00101 * 2 1 3 13 13 C 1.46506 * 119.99936 * 59.99567 * 12 2 1 14 14 C 1.34773 * 120.00036 * 240.27603 * 12 2 1 15 15 O 1.21723 * 119.99809 * 359.72126 * 14 12 2 16 16 C 1.46258 * 120.00262 * 179.72464 * 14 12 2 17 17 C 1.34978 * 120.00287 * 179.97438 * 16 14 12 18 18 C 1.46994 * 120.00126 * 179.97438 * 17 16 14 19 19 C 1.39976 * 120.11304 * 359.72641 * 18 17 16 20 20 C 1.37661 * 119.88098 * 179.71895 * 19 18 17 21 21 C 1.39016 * 120.11860 * 0.57857 * 20 19 18 22 22 O 1.35733 * 119.89209 * 179.69961 * 21 20 19 23 23 C 1.42903 * 116.99818 * 359.97229 * 22 21 20 24 24 C 1.50699 * 109.47419 * 179.97438 * 23 22 21 25 25 N 1.34776 * 119.99939 * 180.02562 * 24 23 22 26 26 O 1.21281 * 119.99535 * 0.02562 * 24 23 22 27 27 C 1.39029 * 120.22428 * 359.67445 * 21 20 19 28 28 C 1.37659 * 120.11384 * 0.04540 * 27 21 20 29 29 H 1.08996 * 109.47248 * 59.99675 * 1 2 3 30 30 H 1.08998 * 109.47453 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46932 * 300.00026 * 1 2 3 32 32 H 0.96995 * 119.99381 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.46892 * 90.00398 * 13 12 2 34 34 H 1.09000 * 109.46803 * 209.99571 * 13 12 2 35 35 H 1.09000 * 109.47214 * 330.00364 * 13 12 2 36 36 H 1.08002 * 119.99611 * 359.97438 * 16 14 12 37 37 H 1.08001 * 119.99572 * 0.02562 * 17 16 14 38 38 H 1.07997 * 120.05883 * 359.97438 * 19 18 17 39 39 H 1.08008 * 119.94195 * 180.27569 * 20 19 18 40 40 H 1.08994 * 109.47639 * 300.00918 * 23 22 21 41 41 H 1.09007 * 109.46712 * 60.00747 * 23 22 21 42 42 H 0.96989 * 120.00215 * 0.02562 * 25 24 23 43 43 H 0.97007 * 119.99662 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.94147 * 180.02562 * 27 21 20 45 45 H 1.07997 * 120.05435 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 3.1463 -2.2871 -3.6038 10 1 1.1659 -1.5867 -4.8161 11 1 3.1465 -0.1875 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4280 14 6 2.7886 -0.0341 2.0861 15 8 3.0827 1.1313 1.8935 16 6 3.2711 -0.7218 3.2833 17 6 4.0430 -0.0644 4.1744 18 6 4.5275 -0.7554 5.3779 19 6 4.1851 -2.0935 5.6052 20 6 4.6463 -2.7377 6.7310 21 6 5.4407 -2.0582 7.6474 22 8 5.8878 -2.6961 8.7589 23 6 5.5029 -4.0627 8.9217 24 6 6.0883 -4.6005 10.2019 25 7 5.8567 -5.8777 10.5645 26 8 6.7679 -3.8839 10.9059 27 6 5.7792 -0.7276 7.4290 28 6 5.3280 -0.0759 6.3035 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7087 1.1612 -3.4844 33 1 2.4156 -2.7378 0.9717 34 1 1.6238 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9846 36 1 3.0099 -1.7556 3.4544 37 1 4.3038 0.9696 4.0035 38 1 3.5638 -2.6207 4.8965 39 1 4.3864 -3.7715 6.9050 40 1 4.4159 -4.1318 8.9616 41 1 5.8734 -4.6473 8.0795 42 1 5.3136 -6.4509 10.0013 43 1 6.2333 -6.2238 11.3888 44 1 6.3969 -0.2042 8.1437 45 1 5.5918 0.9576 6.1346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264021075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:23 Heat of formation + Delta-G solvation = -60.694434 kcal Electronic energy + Delta-G solvation = -26708.555980 eV Core-core repulsion = 22692.207728 eV Total energy + Delta-G solvation = -4016.348253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.79855 -39.65550 -39.03750 -37.75484 -35.37328 -34.33423 -33.55578 -32.76136 -31.40115 -30.08592 -29.28200 -28.03005 -26.13581 -25.21239 -24.10641 -23.25150 -21.79370 -21.10264 -19.78983 -18.87050 -18.33436 -17.92535 -17.05790 -16.88070 -16.86235 -16.35549 -15.90072 -15.29130 -15.21432 -14.77044 -14.66462 -14.43467 -14.32993 -14.19764 -13.62400 -13.18317 -13.07926 -12.84522 -12.62582 -12.45542 -12.31159 -11.84271 -11.73347 -11.52223 -11.37913 -11.06202 -10.97618 -10.80767 -10.69181 -10.51626 -10.34825 -10.23941 -10.16501 -9.84499 -9.31269 -9.16684 -8.98716 -8.42376 -7.97673 -7.52579 -6.06509 -4.14276 0.58469 1.10161 1.96711 2.10017 2.17712 3.25987 3.30344 3.34002 3.36977 3.56828 3.97497 4.07741 4.12190 4.35211 4.40562 4.44003 4.50514 4.55566 4.76741 5.01424 5.10322 5.22138 5.24814 5.27765 5.51915 5.72628 5.76567 5.90000 6.02160 6.06445 6.11195 6.11928 6.28870 6.39892 6.48751 6.61645 6.66586 6.77878 6.84392 6.99329 7.07109 7.46087 7.54980 7.60635 7.72865 8.03101 8.20842 8.55097 8.84984 9.07988 9.52220 10.98834 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023255 B = 0.001828 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.730119 B =15312.971452 C =15840.019421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.587 5.587 13 C 0.086 3.914 14 C 0.531 3.469 15 O -0.557 6.557 16 C -0.192 4.192 17 C -0.045 4.045 18 C -0.094 4.094 19 C -0.065 4.065 20 C -0.210 4.210 21 C 0.128 3.872 22 O -0.290 6.290 23 C 0.038 3.962 24 C 0.520 3.480 25 N -0.851 5.851 26 O -0.518 6.518 27 C -0.147 4.147 28 C -0.059 4.059 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.012 0.988 32 H 0.262 0.738 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.404 0.596 43 H 0.409 0.591 44 H 0.135 0.865 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -14.712 23.389 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.082 0.918 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.317 5.317 13 C -0.058 4.058 14 C 0.320 3.680 15 O -0.438 6.438 16 C -0.213 4.213 17 C -0.065 4.065 18 C -0.095 4.095 19 C -0.083 4.083 20 C -0.229 4.229 21 C 0.082 3.918 22 O -0.202 6.202 23 C -0.041 4.041 24 C 0.303 3.697 25 N -0.418 5.418 26 O -0.392 6.392 27 C -0.165 4.165 28 C -0.077 4.077 29 H 0.112 0.888 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.232 0.768 43 H 0.241 0.759 44 H 0.153 0.847 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.168 -13.298 23.581 27.766 hybrid contribution -0.063 -1.401 -1.014 1.731 sum 6.106 -14.699 22.567 27.615 Atomic orbital electron populations 1.22096 0.98212 0.99343 1.00897 1.18965 0.90873 0.94626 0.79982 0.91783 1.21356 1.31665 1.12928 0.90261 0.92239 1.24908 0.94998 0.95014 0.98989 1.69892 1.36445 1.22659 1.23622 0.86433 0.78566 0.79582 0.82756 1.19844 1.20962 1.20922 1.48140 1.48717 1.11517 1.23347 1.21594 1.01598 0.83303 0.99279 1.18186 0.79622 0.86653 0.83518 1.90761 1.58719 1.16934 1.77390 1.23277 1.01401 1.00608 0.96014 1.22225 0.93706 0.99760 0.90780 1.19050 1.00552 0.93982 0.95869 1.21233 0.97298 0.93740 0.96054 1.21118 1.03942 1.00786 0.97041 1.19186 0.94310 0.92406 0.85866 1.86105 1.70629 1.23504 1.40001 1.22451 1.01053 0.83505 0.97050 1.20077 0.80543 0.82291 0.86794 1.43656 1.56834 1.12616 1.28654 1.90823 1.37528 1.57267 1.53561 1.20361 1.04445 0.92004 0.99711 1.21226 0.94670 0.99843 0.91959 0.88776 0.95114 0.96930 0.92755 0.93272 0.92900 0.90863 0.85738 0.84711 0.85004 0.85329 0.88622 0.88622 0.76769 0.75910 0.84730 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.95 37.16 0.33 -3.19 16 2 C 0.26 6.60 2.64 -69.08 -0.18 6.42 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.52 -14.23 8.37 -34.44 -0.29 -14.52 16 5 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.59 -12.66 2.75 -176.96 -0.49 -13.15 16 13 C 0.09 1.42 9.40 59.85 0.56 1.99 16 14 C 0.53 11.23 7.60 -13.04 -0.10 11.13 16 15 O -0.56 -13.98 15.56 5.17 0.08 -13.90 16 16 C -0.19 -2.98 8.61 -37.52 -0.32 -3.30 16 17 C -0.04 -0.63 9.45 -37.19 -0.35 -0.98 16 18 C -0.09 -1.09 5.87 -105.05 -0.62 -1.71 16 19 C -0.07 -0.65 9.40 -39.14 -0.37 -1.01 16 20 C -0.21 -1.79 9.01 -39.50 -0.36 -2.15 16 21 C 0.13 1.27 6.70 -39.00 -0.26 1.01 16 22 O -0.29 -2.93 9.66 -38.82 -0.37 -3.30 16 23 C 0.04 0.22 5.21 36.01 0.19 0.41 16 24 C 0.52 3.71 8.18 -10.99 -0.09 3.62 16 25 N -0.85 -2.10 8.87 31.22 0.28 -1.83 16 26 O -0.52 -6.52 17.34 -14.35 -0.25 -6.77 16 27 C -0.15 -1.48 9.97 -39.50 -0.39 -1.88 16 28 C -0.06 -0.61 9.79 -39.14 -0.38 -0.99 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.67 6.08 -51.93 -0.32 0.35 16 35 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 36 H 0.13 1.53 4.21 -52.49 -0.22 1.31 16 37 H 0.14 2.00 7.52 -52.49 -0.39 1.60 16 38 H 0.13 1.12 6.16 -52.49 -0.32 0.79 16 39 H 0.13 0.68 6.27 -52.48 -0.33 0.35 16 40 H 0.10 0.31 7.65 -51.93 -0.40 -0.09 16 41 H 0.10 0.32 7.65 -51.93 -0.40 -0.08 16 42 H 0.40 -0.37 8.83 -40.82 -0.36 -0.73 16 43 H 0.41 0.76 8.93 -40.82 -0.36 0.40 16 44 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -37.28 378.50 -7.85 -45.13 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.68 Total: 0.17 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.72 Total: -3.54 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.42 Total: -39.56 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.54 Total: -23.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.28 -7.85 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264021075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.560 kcal (2) G-P(sol) polarization free energy of solvation -37.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds