Wall clock time and date at job start Tue Mar 31 2020 18:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47453 * 2 1 4 4 C 1.50700 * 109.46996 * 239.99800 * 2 1 3 5 5 H 1.08000 * 120.00312 * 240.00330 * 4 2 1 6 6 C 1.37884 * 119.99965 * 60.00134 * 4 2 1 7 7 N 1.31518 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47128 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47370 * 120.00024 * 8 6 4 11 11 H 1.48500 * 109.47196 * 240.00176 * 8 6 4 12 12 N 1.46499 * 109.47078 * 120.00101 * 2 1 3 13 13 C 1.46506 * 119.99936 * 59.99567 * 12 2 1 14 14 C 1.34773 * 120.00036 * 240.27603 * 12 2 1 15 15 O 1.21723 * 119.99809 * 359.72126 * 14 12 2 16 16 C 1.46258 * 120.00262 * 179.72464 * 14 12 2 17 17 C 1.34978 * 120.00287 * 179.97438 * 16 14 12 18 18 C 1.46994 * 120.00126 * 179.97438 * 17 16 14 19 19 C 1.39976 * 120.11304 * 359.72641 * 18 17 16 20 20 C 1.37661 * 119.88098 * 179.71895 * 19 18 17 21 21 C 1.39016 * 120.11860 * 0.57857 * 20 19 18 22 22 O 1.35733 * 119.89209 * 179.69961 * 21 20 19 23 23 C 1.42903 * 116.99818 * 359.97229 * 22 21 20 24 24 C 1.50699 * 109.47419 * 179.97438 * 23 22 21 25 25 N 1.34776 * 119.99939 * 180.02562 * 24 23 22 26 26 O 1.21281 * 119.99535 * 0.02562 * 24 23 22 27 27 C 1.39029 * 120.22428 * 359.67445 * 21 20 19 28 28 C 1.37659 * 120.11384 * 0.04540 * 27 21 20 29 29 H 1.08996 * 109.47248 * 59.99675 * 1 2 3 30 30 H 1.08998 * 109.47453 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46932 * 300.00026 * 1 2 3 32 32 H 0.96995 * 119.99381 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.46892 * 90.00398 * 13 12 2 34 34 H 1.09000 * 109.46803 * 209.99571 * 13 12 2 35 35 H 1.09000 * 109.47214 * 330.00364 * 13 12 2 36 36 H 1.08002 * 119.99611 * 359.97438 * 16 14 12 37 37 H 1.08001 * 119.99572 * 0.02562 * 17 16 14 38 38 H 1.07997 * 120.05883 * 359.97438 * 19 18 17 39 39 H 1.08008 * 119.94195 * 180.27569 * 20 19 18 40 40 H 1.08994 * 109.47639 * 300.00918 * 23 22 21 41 41 H 1.09007 * 109.46712 * 60.00747 * 23 22 21 42 42 H 0.96989 * 120.00215 * 0.02562 * 25 24 23 43 43 H 0.97007 * 119.99662 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.94147 * 180.02562 * 27 21 20 45 45 H 1.07997 * 120.05435 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 3.1463 -2.2871 -3.6038 10 1 1.1659 -1.5867 -4.8161 11 1 3.1465 -0.1875 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4280 14 6 2.7886 -0.0341 2.0861 15 8 3.0827 1.1313 1.8935 16 6 3.2711 -0.7218 3.2833 17 6 4.0430 -0.0644 4.1744 18 6 4.5275 -0.7554 5.3779 19 6 4.1851 -2.0935 5.6052 20 6 4.6463 -2.7377 6.7310 21 6 5.4407 -2.0582 7.6474 22 8 5.8878 -2.6961 8.7589 23 6 5.5029 -4.0627 8.9217 24 6 6.0883 -4.6005 10.2019 25 7 5.8567 -5.8777 10.5645 26 8 6.7679 -3.8839 10.9059 27 6 5.7792 -0.7276 7.4290 28 6 5.3280 -0.0759 6.3035 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7087 1.1612 -3.4844 33 1 2.4156 -2.7378 0.9717 34 1 1.6238 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9846 36 1 3.0099 -1.7556 3.4544 37 1 4.3038 0.9696 4.0035 38 1 3.5638 -2.6207 4.8965 39 1 4.3864 -3.7715 6.9050 40 1 4.4159 -4.1318 8.9616 41 1 5.8734 -4.6473 8.0795 42 1 5.3136 -6.4509 10.0013 43 1 6.2333 -6.2238 11.3888 44 1 6.3969 -0.2042 8.1437 45 1 5.5918 0.9576 6.1346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264021075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:22 Heat of formation + Delta-G solvation = -87.501911 kcal Electronic energy + Delta-G solvation = -26709.718440 eV Core-core repulsion = 22692.207728 eV Total energy + Delta-G solvation = -4017.510712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.44282 -40.72315 -40.18693 -38.53260 -37.14614 -34.91311 -34.78404 -34.42252 -32.11061 -31.59275 -30.30142 -28.83403 -27.59229 -27.27396 -25.23231 -24.01870 -23.00881 -21.71149 -21.18556 -19.55883 -19.41094 -18.74711 -18.47780 -18.11871 -17.41372 -17.36509 -17.20098 -16.53754 -16.23993 -16.00225 -15.97433 -15.42260 -15.39655 -15.00043 -14.73679 -14.44035 -14.23916 -14.00919 -13.70637 -13.68415 -13.46965 -13.44487 -12.97599 -12.82278 -12.71436 -12.66417 -12.46916 -12.35518 -12.17259 -12.10115 -11.77541 -11.15865 -11.11235 -10.84020 -10.73254 -10.70892 -10.49081 -10.02836 -9.33054 -8.77962 -8.13595 -6.30429 -0.37231 0.39687 1.05647 1.41039 1.42971 1.48844 1.54374 1.69930 2.32408 2.46306 2.54469 2.85241 2.91927 3.13892 3.65582 3.69830 3.88520 3.90847 4.10686 4.14261 4.16551 4.21554 4.31297 4.43088 4.52418 4.64665 4.72988 4.82102 4.89719 5.01048 5.05461 5.08838 5.10484 5.19304 5.27937 5.41988 5.50146 5.66592 5.68317 5.70420 5.72030 5.83643 6.06541 6.17400 6.27165 6.44669 6.77952 6.87705 7.26404 7.33529 7.51021 8.90815 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023255 B = 0.001828 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.730119 B =15312.971452 C =15840.019421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.258 3.742 3 H 0.007 0.993 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.596 5.596 13 C 0.081 3.919 14 C 0.520 3.480 15 O -0.616 6.616 16 C -0.211 4.211 17 C -0.016 4.016 18 C -0.121 4.121 19 C -0.059 4.059 20 C -0.204 4.204 21 C 0.131 3.869 22 O -0.316 6.316 23 C 0.030 3.970 24 C 0.516 3.484 25 N -0.826 5.826 26 O -0.586 6.586 27 C -0.165 4.165 28 C -0.059 4.059 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.019 0.981 32 H 0.264 0.736 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.164 0.836 37 H 0.115 0.885 38 H 0.153 0.847 39 H 0.169 0.831 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.424 0.576 43 H 0.414 0.586 44 H 0.137 0.863 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -18.874 24.526 31.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.156 3.844 3 H 0.025 0.975 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.325 5.325 13 C -0.061 4.061 14 C 0.312 3.688 15 O -0.502 6.502 16 C -0.231 4.231 17 C -0.036 4.036 18 C -0.121 4.121 19 C -0.076 4.076 20 C -0.222 4.222 21 C 0.086 3.914 22 O -0.229 6.229 23 C -0.048 4.048 24 C 0.300 3.700 25 N -0.392 5.392 26 O -0.465 6.465 27 C -0.183 4.183 28 C -0.077 4.077 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.181 0.819 37 H 0.133 0.867 38 H 0.171 0.829 39 H 0.187 0.813 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.256 0.744 43 H 0.246 0.754 44 H 0.155 0.845 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.974 -17.570 24.731 30.919 hybrid contribution 0.066 -0.156 -1.160 1.172 sum 6.040 -17.726 23.571 30.104 Atomic orbital electron populations 1.21876 0.97016 1.00258 0.99923 1.18562 0.91755 0.92232 0.81885 0.97541 1.21602 1.31752 1.12973 0.91090 0.92094 1.25781 0.95139 0.95703 1.02133 1.70039 1.37400 1.23971 1.24343 0.85373 0.78208 0.78455 0.78755 1.18810 1.19864 1.21290 1.48136 1.48817 1.13464 1.22099 1.21887 1.01540 0.80174 1.02493 1.19113 0.78715 0.86204 0.84744 1.90720 1.60876 1.19675 1.78910 1.23001 1.03802 1.02114 0.94221 1.22290 0.91448 0.98875 0.91026 1.18961 1.02562 0.95237 0.95376 1.21504 0.96691 0.92784 0.96667 1.21466 1.02602 1.02429 0.95693 1.19370 0.93755 0.92319 0.86000 1.86084 1.70994 1.25839 1.40001 1.22838 1.02999 0.81728 0.97205 1.20480 0.79706 0.82967 0.86843 1.43499 1.55658 1.11335 1.28753 1.90802 1.40818 1.59213 1.55678 1.20502 1.05098 0.92870 0.99850 1.21337 0.94189 1.00310 0.91819 0.91417 0.93067 0.96173 0.92667 0.92510 0.88290 0.91057 0.81857 0.86712 0.82935 0.81322 0.85371 0.85457 0.74413 0.75388 0.84483 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.95 71.98 0.64 -5.83 16 2 C 0.26 13.77 2.64 44.25 0.12 13.89 16 3 H 0.01 0.42 6.90 -2.39 -0.02 0.41 16 4 C -0.54 -29.56 8.37 25.60 0.21 -29.34 16 5 H 0.06 3.26 7.65 -2.91 -0.02 3.24 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.64 11.32 21.45 0.24 -53.40 16 8 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 9 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 N -0.60 -25.81 2.75 -831.99 -2.29 -28.10 16 13 C 0.08 2.48 9.40 127.77 1.20 3.68 16 14 C 0.52 22.44 7.60 86.33 0.66 23.10 16 15 O -0.62 -32.89 15.56 -4.42 -0.07 -32.96 16 16 C -0.21 -6.25 8.61 23.61 0.20 -6.05 16 17 C -0.02 -0.44 9.45 23.82 0.23 -0.22 16 18 C -0.12 -2.56 5.87 -20.14 -0.12 -2.68 16 19 C -0.06 -0.92 9.40 22.55 0.21 -0.71 16 20 C -0.20 -2.52 9.01 22.32 0.20 -2.32 16 21 C 0.13 2.24 6.70 22.65 0.15 2.39 16 22 O -0.32 -5.63 9.66 -71.53 -0.69 -6.32 16 23 C 0.03 0.23 5.21 71.24 0.37 0.60 16 24 C 0.52 6.23 8.18 87.66 0.72 6.94 16 25 N -0.83 -1.64 8.87 -173.53 -1.54 -3.18 16 26 O -0.59 -14.60 17.34 16.00 0.28 -14.32 16 27 C -0.16 -3.12 9.97 22.32 0.22 -2.90 16 28 C -0.06 -1.15 9.79 22.55 0.22 -0.93 16 29 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 30 H 0.05 2.23 6.66 -2.39 -0.02 2.22 16 31 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 2.09 6.08 -2.39 -0.01 2.07 16 35 H 0.07 2.20 6.43 -2.39 -0.02 2.18 16 36 H 0.16 3.38 4.21 -2.91 -0.01 3.36 16 37 H 0.11 3.56 7.52 -2.91 -0.02 3.54 16 38 H 0.15 1.73 6.16 -2.91 -0.02 1.71 16 39 H 0.17 0.66 6.27 -2.91 -0.02 0.64 16 40 H 0.13 0.14 7.65 -2.39 -0.02 0.13 16 41 H 0.13 0.17 7.65 -2.38 -0.02 0.15 16 42 H 0.42 -2.51 8.83 -92.72 -0.82 -3.32 16 43 H 0.41 0.59 8.93 -92.70 -0.83 -0.24 16 44 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -88.23 378.50 3.06 -85.17 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -0.59 Total: 7.01 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.69 Total: 0.71 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -3.59 Total: -84.68 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.48 Total: -53.61 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -88.23 3.06 -85.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264021075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.331 kcal (2) G-P(sol) polarization free energy of solvation -88.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds