Wall clock time and date at job start Tue Mar 31 2020 18:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47510 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47309 * 119.99914 * 8 6 4 11 11 H 1.48498 * 109.47163 * 239.99790 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.46505 * 120.00155 * 59.99832 * 12 2 1 14 14 C 1.34773 * 120.00007 * 240.00425 * 12 2 1 15 15 O 1.21282 * 120.00259 * 359.97438 * 14 12 2 16 16 C 1.50702 * 120.00126 * 180.02562 * 14 12 2 17 17 C 1.53004 * 109.47499 * 179.97438 * 16 14 12 18 18 N 1.46497 * 109.47194 * 179.97438 * 17 16 14 19 19 C 1.40220 * 120.50058 * 90.00107 * 18 17 16 20 20 C 1.38496 * 120.74613 * 15.43025 * 19 18 17 21 21 C 1.38285 * 119.81523 * 179.97438 * 20 19 18 22 22 C 1.38275 * 120.20268 * 0.02640 * 21 20 19 23 23 C 1.38318 * 120.25565 * 359.97438 * 22 21 20 24 24 C 1.38384 * 119.87463 * 359.97274 * 23 22 21 25 25 O 1.35982 * 120.66917 * 180.02562 * 24 23 22 26 26 C 1.43002 * 116.71846 * 147.13648 * 25 24 23 27 27 C 1.35084 * 120.51155 * 269.72144 * 18 17 16 28 28 O 1.21294 * 120.12740 * 1.68804 * 27 18 17 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 34 34 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 35 35 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 36 36 H 1.09002 * 109.46657 * 299.99705 * 16 14 12 37 37 H 1.08996 * 109.47578 * 59.99114 * 16 14 12 38 38 H 1.09001 * 109.46419 * 300.00140 * 17 16 14 39 39 H 1.09001 * 109.46694 * 59.99362 * 17 16 14 40 40 H 1.08005 * 120.08961 * 0.03566 * 20 19 18 41 41 H 1.08006 * 119.89701 * 180.02562 * 21 20 19 42 42 H 1.07999 * 119.87241 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.06125 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.44610 * 166.44482 * 26 25 24 45 45 H 1.08992 * 109.44490 * 286.38453 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1254 1.8913 16 6 3.2959 -0.7462 3.3136 17 6 4.1463 0.2154 4.1463 18 7 4.6345 -0.4752 5.3425 19 6 5.8580 -1.1598 5.3194 20 6 6.7712 -0.9438 4.3008 21 6 7.9723 -1.6291 4.2974 22 6 8.2629 -2.5284 5.3067 23 6 7.3551 -2.7484 6.3268 24 6 6.1515 -2.0656 6.3376 25 8 5.2475 -2.2691 7.3329 26 6 4.4501 -1.1459 7.7167 27 6 3.9157 -0.4576 6.4860 28 8 2.8425 0.1066 6.5219 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7083 1.1609 -3.4845 33 1 2.4157 -2.7377 0.9717 34 1 1.6237 -2.2852 2.5002 35 1 0.6904 -2.3002 0.9847 36 1 2.4483 -1.0891 3.9069 37 1 3.9016 -1.6023 3.0167 38 1 4.9938 0.5579 3.5526 39 1 3.5408 1.0718 4.4432 40 1 6.5461 -0.2414 3.5118 41 1 8.6855 -1.4614 3.5038 42 1 9.2024 -3.0609 5.2986 43 1 7.5852 -3.4518 7.1134 44 1 3.6187 -1.4852 8.3345 45 1 5.0611 -0.4441 8.2843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264024585.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:49 Heat of formation + Delta-G solvation = -64.261145 kcal Electronic energy + Delta-G solvation = -28715.228973 eV Core-core repulsion = 24698.726056 eV Total energy + Delta-G solvation = -4016.502917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80424 -39.32798 -38.97838 -37.87927 -36.11138 -35.32828 -32.95836 -31.78128 -30.94171 -30.06833 -29.41873 -27.77451 -26.15109 -25.24440 -24.75508 -23.61096 -22.32854 -20.82669 -19.70368 -19.38850 -18.34307 -17.54186 -17.22478 -16.69054 -16.29589 -15.83251 -15.61238 -15.44735 -15.17895 -14.95981 -14.70765 -14.49025 -14.30836 -14.17370 -13.55549 -13.32312 -13.14719 -12.76848 -12.63544 -12.41558 -12.20816 -12.15312 -11.62024 -11.57470 -11.52460 -11.46024 -11.08965 -11.04188 -10.80989 -10.71865 -10.61185 -10.25249 -10.18435 -10.16206 -9.18909 -9.03286 -8.94545 -8.44463 -8.10937 -7.61686 -6.08471 -4.16578 0.78782 0.96806 2.06160 2.25152 2.96543 3.24642 3.30526 3.33509 3.36940 3.40887 3.68250 3.95677 4.35280 4.38746 4.57107 4.65532 4.76137 4.88240 4.95596 4.98942 5.03533 5.12131 5.20070 5.22993 5.41500 5.52061 5.62389 5.69703 5.81644 5.90657 5.96549 6.06278 6.15099 6.19150 6.28479 6.32791 6.64726 6.75936 6.82077 7.04992 7.06188 7.40629 7.49513 7.50710 7.70415 8.00105 8.18081 8.50143 8.81076 9.00663 9.50005 10.96872 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.002976 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.664857 B = 9404.788682 C =10459.564557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.591 5.591 13 C 0.086 3.914 14 C 0.510 3.490 15 O -0.555 6.555 16 C -0.154 4.154 17 C 0.124 3.876 18 N -0.549 5.549 19 C 0.101 3.899 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.115 4.115 23 C -0.109 4.109 24 C 0.073 3.927 25 O -0.303 6.303 26 C 0.053 3.947 27 C 0.484 3.516 28 O -0.503 6.503 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.145 0.855 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.420 -8.093 19.440 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.321 5.321 13 C -0.058 4.058 14 C 0.296 3.704 15 O -0.435 6.435 16 C -0.195 4.195 17 C 0.003 3.997 18 N -0.274 5.274 19 C 0.006 3.994 20 C -0.143 4.143 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.128 4.128 24 C 0.026 3.974 25 O -0.218 6.218 26 C -0.025 4.025 27 C 0.272 3.728 28 O -0.377 6.377 29 H 0.113 0.887 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.734 -7.180 19.301 23.702 hybrid contribution 0.138 -0.446 -1.067 1.165 sum 11.872 -7.626 18.234 23.056 Atomic orbital electron populations 1.22102 0.98228 0.99381 1.00917 1.18966 0.90896 0.94538 0.79904 0.91822 1.21349 1.31781 1.12942 0.90268 0.92250 1.24904 0.94963 0.94982 0.98992 1.69890 1.36381 1.22653 1.23661 0.86436 0.78612 0.79568 0.82744 1.19825 1.20926 1.20899 1.48231 1.48692 1.11695 1.23513 1.21571 1.01714 0.83158 0.99344 1.20069 0.79385 0.86993 0.84001 1.90655 1.58773 1.16998 1.77072 1.21969 1.01198 0.99992 0.96317 1.21486 0.99581 0.94913 0.83672 1.45852 1.18636 1.50506 1.12409 1.18168 0.87441 0.96489 0.97278 1.20868 0.93310 1.01614 0.98538 1.21050 0.96350 0.96257 0.98921 1.21002 0.99452 0.98870 0.94032 1.20510 0.90159 1.01523 1.00609 1.18618 0.91250 0.98557 0.88944 1.86222 1.48889 1.34731 1.51951 1.23205 0.96504 0.88713 0.94106 1.21573 0.85209 0.80830 0.85220 1.90810 1.20051 1.43003 1.83790 0.88741 0.95102 0.96932 0.92725 0.93212 0.93040 0.90750 0.89043 0.89123 0.88513 0.87992 0.84393 0.84948 0.84953 0.84498 0.83756 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.95 37.16 0.33 -3.26 16 2 C 0.26 6.62 2.64 -69.08 -0.18 6.44 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.59 -12.74 2.75 -175.25 -0.48 -13.22 16 13 C 0.09 1.48 9.48 59.85 0.57 2.05 16 14 C 0.51 10.52 7.67 -10.99 -0.08 10.44 16 15 O -0.56 -13.42 15.31 5.56 0.09 -13.33 16 16 C -0.15 -2.39 4.58 -27.88 -0.13 -2.51 16 17 C 0.12 1.81 4.49 -4.04 -0.02 1.79 16 18 N -0.55 -7.00 2.72 -113.19 -0.31 -7.31 16 19 C 0.10 1.14 6.39 -83.49 -0.53 0.60 16 20 C -0.12 -1.26 9.36 -39.47 -0.37 -1.62 16 21 C -0.11 -0.88 10.04 -39.55 -0.40 -1.28 16 22 C -0.11 -0.83 10.04 -39.54 -0.40 -1.23 16 23 C -0.11 -0.89 10.00 -39.50 -0.39 -1.29 16 24 C 0.07 0.74 6.44 -39.09 -0.25 0.49 16 25 O -0.30 -3.04 10.45 -19.68 -0.21 -3.25 16 26 C 0.05 0.46 7.17 36.05 0.26 0.72 16 27 C 0.48 6.14 7.67 -10.80 -0.08 6.06 16 28 O -0.50 -8.00 16.76 5.54 0.09 -7.90 16 29 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 30 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.73 6.44 -51.93 -0.33 0.39 16 35 H 0.07 1.29 6.43 -51.93 -0.33 0.96 16 36 H 0.09 1.39 7.40 -51.93 -0.38 1.01 16 37 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 38 H 0.10 1.34 5.92 -51.93 -0.31 1.03 16 39 H 0.10 1.66 7.44 -51.93 -0.39 1.28 16 40 H 0.14 1.42 6.12 -52.48 -0.32 1.09 16 41 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -33.41 368.95 -7.72 -41.13 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.00 Total: 2.37 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -2.06 Total: 4.53 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.16 Total: -45.10 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.03 Total: -24.48 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.41 -7.72 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264024585.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.135 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds