Wall clock time and date at job start Tue Mar 31 2020 18:20:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09001 * 109.46801 * 2 1
4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3
5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1
6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1
7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2
9 9 H 1.48497 * 109.47510 * 359.97438 * 8 6 4
10 10 H 1.48507 * 109.47309 * 119.99914 * 8 6 4
11 11 H 1.48498 * 109.47163 * 239.99790 * 8 6 4
12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3
13 13 C 1.46505 * 120.00155 * 59.99832 * 12 2 1
14 14 C 1.34773 * 120.00007 * 240.00425 * 12 2 1
15 15 O 1.21282 * 120.00259 * 359.97438 * 14 12 2
16 16 C 1.50702 * 120.00126 * 180.02562 * 14 12 2
17 17 C 1.53004 * 109.47499 * 179.97438 * 16 14 12
18 18 N 1.46497 * 109.47194 * 179.97438 * 17 16 14
19 19 C 1.40220 * 120.50058 * 90.00107 * 18 17 16
20 20 C 1.38496 * 120.74613 * 15.43025 * 19 18 17
21 21 C 1.38285 * 119.81523 * 179.97438 * 20 19 18
22 22 C 1.38275 * 120.20268 * 0.02640 * 21 20 19
23 23 C 1.38318 * 120.25565 * 359.97438 * 22 21 20
24 24 C 1.38384 * 119.87463 * 359.97274 * 23 22 21
25 25 O 1.35982 * 120.66917 * 180.02562 * 24 23 22
26 26 C 1.43002 * 116.71846 * 147.13648 * 25 24 23
27 27 C 1.35084 * 120.51155 * 269.72144 * 18 17 16
28 28 O 1.21294 * 120.12740 * 1.68804 * 27 18 17
29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3
30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3
32 32 H 0.97001 * 120.00306 * 180.02562 * 7 6 4
33 33 H 1.08999 * 109.46748 * 89.99662 * 13 12 2
34 34 H 1.08997 * 109.47257 * 210.00179 * 13 12 2
35 35 H 1.09002 * 109.46769 * 330.00037 * 13 12 2
36 36 H 1.09002 * 109.46657 * 299.99705 * 16 14 12
37 37 H 1.08996 * 109.47578 * 59.99114 * 16 14 12
38 38 H 1.09001 * 109.46419 * 300.00140 * 17 16 14
39 39 H 1.09001 * 109.46694 * 59.99362 * 17 16 14
40 40 H 1.08005 * 120.08961 * 0.03566 * 20 19 18
41 41 H 1.08006 * 119.89701 * 180.02562 * 21 20 19
42 42 H 1.07999 * 119.87241 * 179.97438 * 22 21 20
43 43 H 1.08000 * 120.06125 * 179.97438 * 23 22 21
44 44 H 1.08998 * 109.44610 * 166.44482 * 26 25 24
45 45 H 1.08992 * 109.44490 * 286.38453 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.6532 -1.5886 -1.1313
6 6 1.6994 -0.2394 -2.4827
7 7 0.9429 0.8297 -2.6034
8 14 2.3226 -1.1196 -4.0078
9 1 3.1484 -2.2857 -3.6037
10 1 1.1679 -1.5867 -4.8165
11 1 3.1474 -0.1859 -4.8160
12 7 2.0184 -0.6906 1.1962
13 6 1.6644 -2.0932 1.4281
14 6 2.7931 -0.0356 2.0834
15 8 3.0865 1.1254 1.8913
16 6 3.2959 -0.7462 3.3136
17 6 4.1463 0.2154 4.1463
18 7 4.6345 -0.4752 5.3425
19 6 5.8580 -1.1598 5.3194
20 6 6.7712 -0.9438 4.3008
21 6 7.9723 -1.6291 4.2974
22 6 8.2629 -2.5284 5.3067
23 6 7.3551 -2.7484 6.3268
24 6 6.1515 -2.0656 6.3376
25 8 5.2475 -2.2691 7.3329
26 6 4.4501 -1.1459 7.7167
27 6 3.9157 -0.4576 6.4860
28 8 2.8425 0.1066 6.5219
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 0.7083 1.1609 -3.4845
33 1 2.4157 -2.7377 0.9717
34 1 1.6237 -2.2852 2.5002
35 1 0.6904 -2.3002 0.9847
36 1 2.4483 -1.0891 3.9069
37 1 3.9016 -1.6023 3.0167
38 1 4.9938 0.5579 3.5526
39 1 3.5408 1.0718 4.4432
40 1 6.5461 -0.2414 3.5118
41 1 8.6855 -1.4614 3.5038
42 1 9.2024 -3.0609 5.2986
43 1 7.5852 -3.4518 7.1134
44 1 3.6187 -1.4852 8.3345
45 1 5.0611 -0.4441 8.2843
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000264024585.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:20:48
Heat of formation + Delta-G solvation = -85.221529 kcal
Electronic energy + Delta-G solvation = -28716.137883 eV
Core-core repulsion = 24698.726056 eV
Total energy + Delta-G solvation = -4017.411827 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 332.157 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.64466 -40.86532 -39.97993 -38.63812 -37.36965 -36.87044 -34.88071 -33.11807
-31.64353 -31.21377 -30.78981 -28.71827 -27.68357 -27.31159 -25.87361 -24.43250
-23.34812 -22.43530 -20.53394 -20.19637 -19.99450 -18.69909 -18.41971 -18.04864
-17.68850 -17.26742 -16.81132 -16.63285 -16.37193 -16.07509 -15.89907 -15.56284
-15.34935 -15.15649 -14.70727 -14.63362 -14.43255 -14.14997 -13.94634 -13.72903
-13.51754 -13.44303 -13.03521 -12.98504 -12.90062 -12.74340 -12.64498 -12.40046
-12.21658 -12.20788 -12.12833 -12.11099 -11.56592 -11.20096 -11.08906 -10.75906
-10.52491 -9.66303 -9.39946 -8.91829 -8.16385 -6.33366 0.05358 0.29790
1.18228 1.31526 1.40377 1.41765 1.53333 1.68744 2.24849 2.30073
2.47298 2.74566 2.89275 3.11632 3.55929 3.64173 3.74289 3.78003
4.00867 4.01752 4.16576 4.20526 4.27284 4.37766 4.43473 4.51938
4.57542 4.64361 4.69970 4.73699 4.76746 4.84272 4.97150 4.99550
5.02571 5.27025 5.30668 5.42645 5.55424 5.56224 5.63920 5.68971
5.84305 5.98666 6.12983 6.28615 6.55822 6.74036 6.74333 7.25013
7.41972 8.88436
Molecular weight = 332.16amu
Principal moments of inertia in cm(-1)
A = 0.016091 B = 0.002976 C = 0.002676
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1739.664857 B = 9404.788682 C =10459.564557
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.261 3.739
3 H 0.011 0.989
4 C -0.537 4.537
5 H 0.062 0.938
6 C 0.014 3.986
7 N -0.919 5.919
8 Si 0.967 3.033
9 H -0.264 1.264
10 H -0.275 1.275
11 H -0.284 1.284
12 N -0.599 5.599
13 C 0.083 3.917
14 C 0.501 3.499
15 O -0.600 6.600
16 C -0.132 4.132
17 C 0.131 3.869
18 N -0.550 5.550
19 C 0.075 3.925
20 C -0.136 4.136
21 C -0.109 4.109
22 C -0.102 4.102
23 C -0.107 4.107
24 C 0.062 3.938
25 O -0.307 6.307
26 C 0.060 3.940
27 C 0.476 3.524
28 O -0.546 6.546
29 H 0.069 0.931
30 H 0.048 0.952
31 H 0.017 0.983
32 H 0.265 0.735
33 H 0.060 0.940
34 H 0.086 0.914
35 H 0.072 0.928
36 H 0.100 0.900
37 H 0.112 0.888
38 H 0.098 0.902
39 H 0.076 0.924
40 H 0.128 0.872
41 H 0.152 0.848
42 H 0.166 0.834
43 H 0.161 0.839
44 H 0.168 0.832
45 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.469 -11.231 20.574 27.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.159 3.841
3 H 0.029 0.971
4 C -0.576 4.576
5 H 0.080 0.920
6 C -0.186 4.186
7 N -0.558 5.558
8 Si 0.792 3.208
9 H -0.188 1.188
10 H -0.201 1.201
11 H -0.210 1.210
12 N -0.329 5.329
13 C -0.059 4.059
14 C 0.290 3.710
15 O -0.482 6.482
16 C -0.172 4.172
17 C 0.009 3.991
18 N -0.274 5.274
19 C -0.018 4.018
20 C -0.157 4.157
21 C -0.128 4.128
22 C -0.121 4.121
23 C -0.126 4.126
24 C 0.016 3.984
25 O -0.222 6.222
26 C -0.017 4.017
27 C 0.266 3.734
28 O -0.423 6.423
29 H 0.088 0.912
30 H 0.067 0.933
31 H 0.036 0.964
32 H 0.074 0.926
33 H 0.078 0.922
34 H 0.104 0.896
35 H 0.091 0.909
36 H 0.118 0.882
37 H 0.130 0.870
38 H 0.116 0.884
39 H 0.094 0.906
40 H 0.146 0.854
41 H 0.169 0.831
42 H 0.183 0.817
43 H 0.178 0.822
44 H 0.185 0.815
45 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges 13.813 -10.373 20.464 26.780
hybrid contribution -0.403 0.540 -1.390 1.545
sum 13.410 -9.833 19.073 25.304
Atomic orbital electron populations
1.21904 0.97326 1.00150 0.99936 1.18570 0.91545 0.92319 0.81677
0.97133 1.21583 1.31935 1.13032 0.91011 0.92012 1.25771 0.95049
0.95633 1.02127 1.70034 1.37321 1.23976 1.24423 0.85369 0.78212
0.78491 0.78709 1.18761 1.20059 1.21031 1.48246 1.48801 1.13407
1.22457 1.21802 1.01823 0.80491 1.01798 1.20915 0.78528 0.86639
0.84961 1.90628 1.60216 1.19193 1.78200 1.21810 1.01674 1.00022
0.93733 1.21192 0.99145 0.94174 0.84562 1.45802 1.19412 1.50484
1.11717 1.18358 0.87104 0.97697 0.98652 1.20955 0.94277 1.02139
0.98303 1.21345 0.95748 0.95897 0.99805 1.21413 1.00260 0.97719
0.92675 1.20879 0.89276 1.01124 1.01307 1.18879 0.92063 0.98701
0.88718 1.86215 1.48940 1.35168 1.51830 1.23376 0.97400 0.88804
0.92141 1.22400 0.84638 0.80233 0.86103 1.90785 1.21953 1.45095
1.84499 0.91196 0.93295 0.96385 0.92612 0.92169 0.89587 0.90908
0.88203 0.86964 0.88418 0.90568 0.85439 0.83078 0.81691 0.82169
0.81508 0.86004
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.70 8.95 71.98 0.64 -6.06 16
2 C 0.26 13.88 2.64 44.25 0.12 14.00 16
3 H 0.01 0.68 6.90 -2.39 -0.02 0.66 16
4 C -0.54 -29.45 8.37 25.60 0.21 -29.23 16
5 H 0.06 3.28 7.65 -2.91 -0.02 3.26 16
6 C 0.01 0.75 5.30 84.66 0.45 1.20 16
7 N -0.92 -53.45 11.32 21.45 0.24 -53.20 16
8 Si 0.97 43.07 29.54 68.60 2.03 45.10 16
9 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16
10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16
11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
12 N -0.60 -26.11 2.75 -826.77 -2.28 -28.39 16
13 C 0.08 2.73 9.48 127.77 1.21 3.94 16
14 C 0.50 21.26 7.67 87.66 0.67 21.94 16
15 O -0.60 -30.67 15.31 -3.04 -0.05 -30.72 16
16 C -0.13 -4.07 4.58 29.85 0.14 -3.93 16
17 C 0.13 3.95 4.49 86.38 0.39 4.34 16
18 N -0.55 -13.96 2.72 -630.24 -1.71 -15.67 16
19 C 0.08 1.61 6.39 38.14 0.24 1.86 16
20 C -0.14 -2.66 9.36 22.34 0.21 -2.45 16
21 C -0.11 -1.52 10.04 22.29 0.22 -1.30 16
22 C -0.10 -1.09 10.04 22.30 0.22 -0.87 16
23 C -0.11 -1.37 10.00 22.32 0.22 -1.15 16
24 C 0.06 1.14 6.44 22.59 0.15 1.28 16
25 O -0.31 -5.40 10.45 -93.35 -0.98 -6.37 16
26 C 0.06 0.93 7.17 71.27 0.51 1.44 16
27 C 0.48 11.95 7.67 87.64 0.67 12.62 16
28 O -0.55 -17.76 16.76 -3.07 -0.05 -17.81 16
29 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16
30 H 0.05 2.20 6.66 -2.39 -0.02 2.18 16
31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16
32 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16
33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
34 H 0.09 2.22 6.44 -2.39 -0.02 2.21 16
35 H 0.07 2.41 6.43 -2.39 -0.02 2.40 16
36 H 0.10 2.95 7.40 -2.39 -0.02 2.93 16
37 H 0.11 3.00 8.11 -2.39 -0.02 2.98 16
38 H 0.10 2.86 5.92 -2.39 -0.01 2.85 16
39 H 0.08 2.68 7.44 -2.39 -0.02 2.66 16
40 H 0.13 2.67 6.12 -2.91 -0.02 2.65 16
41 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16
42 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16
43 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16
44 H 0.17 1.80 8.14 -2.39 -0.02 1.78 16
45 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16
Total: -1.00 -76.05 368.95 4.51 -71.54
By element:
Atomic # 1 Polarization: 16.86 SS G_CDS: 1.02 Total: 17.87 kcal
Atomic # 6 Polarization: 11.36 SS G_CDS: 6.29 Total: 17.64 kcal
Atomic # 7 Polarization: -93.52 SS G_CDS: -3.75 Total: -97.26 kcal
Atomic # 8 Polarization: -53.82 SS G_CDS: -1.07 Total: -54.90 kcal
Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal
Total: -76.05 4.51 -71.54 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000264024585.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.679 kcal
(2) G-P(sol) polarization free energy of solvation -76.050 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.729 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.222 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds