Wall clock time and date at job start Tue Mar 31 2020 18:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47510 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47309 * 119.99914 * 8 6 4 11 11 H 1.48498 * 109.47163 * 239.99790 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.46505 * 120.00155 * 59.99832 * 12 2 1 14 14 C 1.34773 * 120.00007 * 240.00425 * 12 2 1 15 15 O 1.21282 * 120.00259 * 359.97438 * 14 12 2 16 16 C 1.50702 * 120.00126 * 180.02562 * 14 12 2 17 17 C 1.53004 * 109.47499 * 179.97438 * 16 14 12 18 18 N 1.46497 * 109.47194 * 179.97438 * 17 16 14 19 19 C 1.40220 * 120.50058 * 90.00107 * 18 17 16 20 20 C 1.38496 * 120.74613 * 15.43025 * 19 18 17 21 21 C 1.38285 * 119.81523 * 179.97438 * 20 19 18 22 22 C 1.38275 * 120.20268 * 0.02640 * 21 20 19 23 23 C 1.38318 * 120.25565 * 359.97438 * 22 21 20 24 24 C 1.38384 * 119.87463 * 359.97274 * 23 22 21 25 25 O 1.35982 * 120.66917 * 180.02562 * 24 23 22 26 26 C 1.43002 * 116.71846 * 147.13648 * 25 24 23 27 27 C 1.35084 * 120.51155 * 269.72144 * 18 17 16 28 28 O 1.21294 * 120.12740 * 1.68804 * 27 18 17 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 34 34 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 35 35 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 36 36 H 1.09002 * 109.46657 * 299.99705 * 16 14 12 37 37 H 1.08996 * 109.47578 * 59.99114 * 16 14 12 38 38 H 1.09001 * 109.46419 * 300.00140 * 17 16 14 39 39 H 1.09001 * 109.46694 * 59.99362 * 17 16 14 40 40 H 1.08005 * 120.08961 * 0.03566 * 20 19 18 41 41 H 1.08006 * 119.89701 * 180.02562 * 21 20 19 42 42 H 1.07999 * 119.87241 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.06125 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.44610 * 166.44482 * 26 25 24 45 45 H 1.08992 * 109.44490 * 286.38453 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1254 1.8913 16 6 3.2959 -0.7462 3.3136 17 6 4.1463 0.2154 4.1463 18 7 4.6345 -0.4752 5.3425 19 6 5.8580 -1.1598 5.3194 20 6 6.7712 -0.9438 4.3008 21 6 7.9723 -1.6291 4.2974 22 6 8.2629 -2.5284 5.3067 23 6 7.3551 -2.7484 6.3268 24 6 6.1515 -2.0656 6.3376 25 8 5.2475 -2.2691 7.3329 26 6 4.4501 -1.1459 7.7167 27 6 3.9157 -0.4576 6.4860 28 8 2.8425 0.1066 6.5219 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7083 1.1609 -3.4845 33 1 2.4157 -2.7377 0.9717 34 1 1.6237 -2.2852 2.5002 35 1 0.6904 -2.3002 0.9847 36 1 2.4483 -1.0891 3.9069 37 1 3.9016 -1.6023 3.0167 38 1 4.9938 0.5579 3.5526 39 1 3.5408 1.0718 4.4432 40 1 6.5461 -0.2414 3.5118 41 1 8.6855 -1.4614 3.5038 42 1 9.2024 -3.0609 5.2986 43 1 7.5852 -3.4518 7.1134 44 1 3.6187 -1.4852 8.3345 45 1 5.0611 -0.4441 8.2843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264024585.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:48 Heat of formation + Delta-G solvation = -85.221529 kcal Electronic energy + Delta-G solvation = -28716.137883 eV Core-core repulsion = 24698.726056 eV Total energy + Delta-G solvation = -4017.411827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.64466 -40.86532 -39.97993 -38.63812 -37.36965 -36.87044 -34.88071 -33.11807 -31.64353 -31.21377 -30.78981 -28.71827 -27.68357 -27.31159 -25.87361 -24.43250 -23.34812 -22.43530 -20.53394 -20.19637 -19.99450 -18.69909 -18.41971 -18.04864 -17.68850 -17.26742 -16.81132 -16.63285 -16.37193 -16.07509 -15.89907 -15.56284 -15.34935 -15.15649 -14.70727 -14.63362 -14.43255 -14.14997 -13.94634 -13.72903 -13.51754 -13.44303 -13.03521 -12.98504 -12.90062 -12.74340 -12.64498 -12.40046 -12.21658 -12.20788 -12.12833 -12.11099 -11.56592 -11.20096 -11.08906 -10.75906 -10.52491 -9.66303 -9.39946 -8.91829 -8.16385 -6.33366 0.05358 0.29790 1.18228 1.31526 1.40377 1.41765 1.53333 1.68744 2.24849 2.30073 2.47298 2.74566 2.89275 3.11632 3.55929 3.64173 3.74289 3.78003 4.00867 4.01752 4.16576 4.20526 4.27284 4.37766 4.43473 4.51938 4.57542 4.64361 4.69970 4.73699 4.76746 4.84272 4.97150 4.99550 5.02571 5.27025 5.30668 5.42645 5.55424 5.56224 5.63920 5.68971 5.84305 5.98666 6.12983 6.28615 6.55822 6.74036 6.74333 7.25013 7.41972 8.88436 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.002976 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.664857 B = 9404.788682 C =10459.564557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.261 3.739 3 H 0.011 0.989 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.275 1.275 11 H -0.284 1.284 12 N -0.599 5.599 13 C 0.083 3.917 14 C 0.501 3.499 15 O -0.600 6.600 16 C -0.132 4.132 17 C 0.131 3.869 18 N -0.550 5.550 19 C 0.075 3.925 20 C -0.136 4.136 21 C -0.109 4.109 22 C -0.102 4.102 23 C -0.107 4.107 24 C 0.062 3.938 25 O -0.307 6.307 26 C 0.060 3.940 27 C 0.476 3.524 28 O -0.546 6.546 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.017 0.983 32 H 0.265 0.735 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.168 0.832 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.469 -11.231 20.574 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.159 3.841 3 H 0.029 0.971 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.210 1.210 12 N -0.329 5.329 13 C -0.059 4.059 14 C 0.290 3.710 15 O -0.482 6.482 16 C -0.172 4.172 17 C 0.009 3.991 18 N -0.274 5.274 19 C -0.018 4.018 20 C -0.157 4.157 21 C -0.128 4.128 22 C -0.121 4.121 23 C -0.126 4.126 24 C 0.016 3.984 25 O -0.222 6.222 26 C -0.017 4.017 27 C 0.266 3.734 28 O -0.423 6.423 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.146 0.854 41 H 0.169 0.831 42 H 0.183 0.817 43 H 0.178 0.822 44 H 0.185 0.815 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.813 -10.373 20.464 26.780 hybrid contribution -0.403 0.540 -1.390 1.545 sum 13.410 -9.833 19.073 25.304 Atomic orbital electron populations 1.21904 0.97326 1.00150 0.99936 1.18570 0.91545 0.92319 0.81677 0.97133 1.21583 1.31935 1.13032 0.91011 0.92012 1.25771 0.95049 0.95633 1.02127 1.70034 1.37321 1.23976 1.24423 0.85369 0.78212 0.78491 0.78709 1.18761 1.20059 1.21031 1.48246 1.48801 1.13407 1.22457 1.21802 1.01823 0.80491 1.01798 1.20915 0.78528 0.86639 0.84961 1.90628 1.60216 1.19193 1.78200 1.21810 1.01674 1.00022 0.93733 1.21192 0.99145 0.94174 0.84562 1.45802 1.19412 1.50484 1.11717 1.18358 0.87104 0.97697 0.98652 1.20955 0.94277 1.02139 0.98303 1.21345 0.95748 0.95897 0.99805 1.21413 1.00260 0.97719 0.92675 1.20879 0.89276 1.01124 1.01307 1.18879 0.92063 0.98701 0.88718 1.86215 1.48940 1.35168 1.51830 1.23376 0.97400 0.88804 0.92141 1.22400 0.84638 0.80233 0.86103 1.90785 1.21953 1.45095 1.84499 0.91196 0.93295 0.96385 0.92612 0.92169 0.89587 0.90908 0.88203 0.86964 0.88418 0.90568 0.85439 0.83078 0.81691 0.82169 0.81508 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 8.95 71.98 0.64 -6.06 16 2 C 0.26 13.88 2.64 44.25 0.12 14.00 16 3 H 0.01 0.68 6.90 -2.39 -0.02 0.66 16 4 C -0.54 -29.45 8.37 25.60 0.21 -29.23 16 5 H 0.06 3.28 7.65 -2.91 -0.02 3.26 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -53.45 11.32 21.45 0.24 -53.20 16 8 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 N -0.60 -26.11 2.75 -826.77 -2.28 -28.39 16 13 C 0.08 2.73 9.48 127.77 1.21 3.94 16 14 C 0.50 21.26 7.67 87.66 0.67 21.94 16 15 O -0.60 -30.67 15.31 -3.04 -0.05 -30.72 16 16 C -0.13 -4.07 4.58 29.85 0.14 -3.93 16 17 C 0.13 3.95 4.49 86.38 0.39 4.34 16 18 N -0.55 -13.96 2.72 -630.24 -1.71 -15.67 16 19 C 0.08 1.61 6.39 38.14 0.24 1.86 16 20 C -0.14 -2.66 9.36 22.34 0.21 -2.45 16 21 C -0.11 -1.52 10.04 22.29 0.22 -1.30 16 22 C -0.10 -1.09 10.04 22.30 0.22 -0.87 16 23 C -0.11 -1.37 10.00 22.32 0.22 -1.15 16 24 C 0.06 1.14 6.44 22.59 0.15 1.28 16 25 O -0.31 -5.40 10.45 -93.35 -0.98 -6.37 16 26 C 0.06 0.93 7.17 71.27 0.51 1.44 16 27 C 0.48 11.95 7.67 87.64 0.67 12.62 16 28 O -0.55 -17.76 16.76 -3.07 -0.05 -17.81 16 29 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 30 H 0.05 2.20 6.66 -2.39 -0.02 2.18 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 2.22 6.44 -2.39 -0.02 2.21 16 35 H 0.07 2.41 6.43 -2.39 -0.02 2.40 16 36 H 0.10 2.95 7.40 -2.39 -0.02 2.93 16 37 H 0.11 3.00 8.11 -2.39 -0.02 2.98 16 38 H 0.10 2.86 5.92 -2.39 -0.01 2.85 16 39 H 0.08 2.68 7.44 -2.39 -0.02 2.66 16 40 H 0.13 2.67 6.12 -2.91 -0.02 2.65 16 41 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 43 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.17 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -76.05 368.95 4.51 -71.54 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 1.02 Total: 17.87 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 6.29 Total: 17.64 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -3.75 Total: -97.26 kcal Atomic # 8 Polarization: -53.82 SS G_CDS: -1.07 Total: -54.90 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -76.05 4.51 -71.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264024585.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.679 kcal (2) G-P(sol) polarization free energy of solvation -76.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds