Wall clock time and date at job start Tue Mar 31 2020 18:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 N 1.46507 * 109.47172 * 180.02562 * 17 16 14 19 19 C 1.40203 * 120.50692 * 90.00224 * 18 17 16 20 20 C 1.38505 * 120.74537 * 15.42921 * 19 18 17 21 21 C 1.38289 * 119.81552 * 179.97438 * 20 19 18 22 22 C 1.38268 * 120.20294 * 0.02693 * 21 20 19 23 23 C 1.38316 * 120.25993 * 359.97438 * 22 21 20 24 24 C 1.38403 * 119.87131 * 359.97438 * 23 22 21 25 25 O 1.35983 * 120.66300 * 180.02562 * 24 23 22 26 26 C 1.43000 * 116.70971 * 147.14090 * 25 24 23 27 27 C 1.35087 * 120.50573 * 269.72577 * 18 17 16 28 28 O 1.21300 * 120.13038 * 1.67976 * 27 18 17 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 34 34 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 35 35 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 36 36 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 37 37 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 38 38 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 39 39 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 40 40 H 1.08001 * 120.08645 * 0.04206 * 20 19 18 41 41 H 1.08007 * 119.89378 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.87306 * 179.97438 * 22 21 20 43 43 H 1.07999 * 120.06828 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.44435 * 166.44085 * 26 25 24 45 45 H 1.09001 * 109.44290 * 286.37045 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 7 4.6346 -0.4748 -5.3424 19 6 3.8857 -0.4611 -6.5276 20 6 2.8518 0.4440 -6.7015 21 6 2.1260 0.4409 -7.8786 22 6 2.4292 -0.4626 -8.8804 23 6 3.4604 -1.3690 -8.7128 24 6 4.1921 -1.3713 -7.5380 25 8 5.2095 -2.2550 -7.3564 26 6 6.3182 -1.8064 -6.5724 27 6 5.8159 -1.1297 -5.3220 28 8 6.4686 -1.1765 -4.3007 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7089 1.1611 3.4845 33 1 0.7376 -2.1442 -1.9996 34 1 2.4629 -2.5817 -1.9866 35 1 1.5295 -2.5968 -0.4711 36 1 3.9016 -1.6021 -3.0168 37 1 2.4483 -1.0887 -3.9070 38 1 3.5409 1.0721 -4.4431 39 1 4.9938 0.5582 -3.5525 40 1 2.6140 1.1509 -5.9204 41 1 1.3198 1.1464 -8.0157 42 1 1.8586 -0.4606 -9.7973 43 1 3.6943 -2.0736 -9.4972 44 1 6.9392 -2.6599 -6.3005 45 1 6.9094 -1.0976 -7.1522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264024588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:53 Heat of formation + Delta-G solvation = -64.767739 kcal Electronic energy + Delta-G solvation = -28692.261098 eV Core-core repulsion = 24675.736213 eV Total energy + Delta-G solvation = -4016.524885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80847 -39.32753 -38.97705 -37.88844 -36.11275 -35.32231 -32.95253 -31.78241 -30.95709 -30.07658 -29.42175 -27.78036 -26.11638 -25.24479 -24.76056 -23.62066 -22.34074 -20.83558 -19.70854 -19.39333 -18.35043 -17.54354 -17.22838 -16.68221 -16.31648 -15.81504 -15.61929 -15.40521 -15.25359 -14.92775 -14.72594 -14.44813 -14.32603 -14.17938 -13.58473 -13.26636 -13.20878 -12.75015 -12.51966 -12.42120 -12.21938 -12.15677 -11.65679 -11.60231 -11.48597 -11.48332 -11.10148 -11.00920 -10.83667 -10.74091 -10.60374 -10.26983 -10.16985 -10.15732 -9.21645 -9.03611 -8.95369 -8.42909 -8.11726 -7.62141 -6.07816 -4.15823 0.77532 0.94677 2.06592 2.25099 2.96170 3.27995 3.31159 3.33260 3.37243 3.39174 3.68187 3.96101 4.33824 4.39913 4.57239 4.63896 4.75559 4.86734 4.94222 4.98461 5.02799 5.12127 5.18810 5.23610 5.40659 5.50964 5.63295 5.67979 5.83804 5.88996 5.96090 6.02497 6.14529 6.16825 6.31327 6.36127 6.63995 6.73740 6.81521 7.04897 7.05630 7.39134 7.50600 7.51929 7.70727 8.00146 8.18940 8.50035 8.81099 9.00878 9.50578 10.97518 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.002812 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.938774 B = 9956.386582 C =10736.503331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.590 5.590 13 C 0.083 3.917 14 C 0.509 3.491 15 O -0.555 6.555 16 C -0.154 4.154 17 C 0.125 3.875 18 N -0.550 5.550 19 C 0.102 3.898 20 C -0.124 4.124 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.109 4.109 24 C 0.073 3.927 25 O -0.303 6.303 26 C 0.053 3.947 27 C 0.483 3.517 28 O -0.500 6.500 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.145 0.855 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 -4.974 -24.793 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.321 5.321 13 C -0.061 4.061 14 C 0.295 3.705 15 O -0.435 6.435 16 C -0.195 4.195 17 C 0.004 3.996 18 N -0.275 5.275 19 C 0.007 3.993 20 C -0.145 4.145 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.128 4.128 24 C 0.026 3.974 25 O -0.218 6.218 26 C -0.025 4.025 27 C 0.271 3.729 28 O -0.374 6.374 29 H 0.112 0.888 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.155 0.845 44 H 0.163 0.837 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.069 -4.471 -23.923 24.675 hybrid contribution 0.254 -0.490 1.093 1.224 sum 4.322 -4.961 -22.831 23.760 Atomic orbital electron populations 1.22079 0.98147 0.99394 1.00775 1.18947 0.90878 0.94535 0.79870 0.91856 1.21290 1.31923 1.13085 0.90346 0.92300 1.24889 0.94900 0.94969 0.98958 1.69869 1.36290 1.22557 1.23884 0.86547 0.79303 0.79562 0.81938 1.21134 1.20219 1.20206 1.48233 1.48740 1.11648 1.23476 1.21614 0.98758 0.83289 1.02450 1.20078 0.79275 0.87023 0.84079 1.90655 1.58624 1.17125 1.77083 1.21966 1.00928 1.00297 0.96281 1.21484 1.00147 0.94223 0.83784 1.45858 1.19130 1.51548 1.10934 1.18171 0.96172 0.98495 0.86439 1.20856 0.95763 0.98486 0.99353 1.21036 0.99620 0.99224 0.92743 1.20994 0.97307 0.95460 0.99648 1.20517 0.97142 1.00529 0.94581 1.18630 0.92579 0.92097 0.94060 1.86223 1.27631 1.38072 1.69857 1.23211 0.88360 1.02361 0.88594 1.21578 0.80972 0.78849 0.91508 1.90826 1.55553 1.58158 1.32833 0.88811 0.97057 0.95176 0.92611 0.93815 0.92902 0.89979 0.88920 0.89247 0.88603 0.87913 0.84452 0.84992 0.84966 0.84493 0.83730 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.97 37.16 0.33 -3.16 16 2 C 0.26 6.65 2.64 -69.09 -0.18 6.46 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.46 7.99 -34.44 -0.28 -14.74 16 5 H 0.06 1.59 7.33 -52.49 -0.38 1.21 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.59 -12.75 2.75 -175.26 -0.48 -13.23 16 13 C 0.08 1.43 9.24 59.85 0.55 1.98 16 14 C 0.51 10.53 7.67 -10.99 -0.08 10.45 16 15 O -0.56 -13.43 15.31 5.56 0.09 -13.35 16 16 C -0.15 -2.39 4.58 -27.89 -0.13 -2.52 16 17 C 0.12 1.81 4.49 -4.04 -0.02 1.79 16 18 N -0.55 -7.01 2.72 -113.20 -0.31 -7.32 16 19 C 0.10 1.13 6.39 -83.50 -0.53 0.59 16 20 C -0.12 -1.21 9.36 -39.46 -0.37 -1.58 16 21 C -0.11 -0.83 10.04 -39.55 -0.40 -1.23 16 22 C -0.12 -0.79 10.04 -39.54 -0.40 -1.19 16 23 C -0.11 -0.86 10.00 -39.49 -0.39 -1.26 16 24 C 0.07 0.73 6.44 -39.09 -0.25 0.48 16 25 O -0.30 -3.04 10.45 -19.69 -0.21 -3.24 16 26 C 0.05 0.47 7.17 36.05 0.26 0.72 16 27 C 0.48 6.23 7.67 -10.80 -0.08 6.15 16 28 O -0.50 -8.19 16.77 5.54 0.09 -8.09 16 29 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.77 6.44 -51.92 -0.33 0.44 16 35 H 0.08 1.51 7.02 -51.93 -0.36 1.14 16 36 H 0.09 1.46 7.40 -51.93 -0.38 1.08 16 37 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 38 H 0.10 1.30 5.92 -51.93 -0.31 0.99 16 39 H 0.10 1.72 7.44 -51.93 -0.39 1.33 16 40 H 0.14 1.33 6.12 -52.49 -0.32 1.01 16 41 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.15 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -33.64 369.63 -7.77 -41.41 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.07 Total: 1.95 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.06 Total: 4.67 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.16 Total: -45.22 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.03 Total: -24.68 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.64 -7.77 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264024588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.355 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds