Wall clock time and date at job start Tue Mar 31 2020 18:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 N 1.46507 * 109.47172 * 180.02562 * 17 16 14 19 19 C 1.40203 * 120.50692 * 90.00224 * 18 17 16 20 20 C 1.38505 * 120.74537 * 15.42921 * 19 18 17 21 21 C 1.38289 * 119.81552 * 179.97438 * 20 19 18 22 22 C 1.38268 * 120.20294 * 0.02693 * 21 20 19 23 23 C 1.38316 * 120.25993 * 359.97438 * 22 21 20 24 24 C 1.38403 * 119.87131 * 359.97438 * 23 22 21 25 25 O 1.35983 * 120.66300 * 180.02562 * 24 23 22 26 26 C 1.43000 * 116.70971 * 147.14090 * 25 24 23 27 27 C 1.35087 * 120.50573 * 269.72577 * 18 17 16 28 28 O 1.21300 * 120.13038 * 1.67976 * 27 18 17 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 34 34 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 35 35 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 36 36 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 37 37 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 38 38 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 39 39 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 40 40 H 1.08001 * 120.08645 * 0.04206 * 20 19 18 41 41 H 1.08007 * 119.89378 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.87306 * 179.97438 * 22 21 20 43 43 H 1.07999 * 120.06828 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.44435 * 166.44085 * 26 25 24 45 45 H 1.09001 * 109.44290 * 286.37045 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 7 4.6346 -0.4748 -5.3424 19 6 3.8857 -0.4611 -6.5276 20 6 2.8518 0.4440 -6.7015 21 6 2.1260 0.4409 -7.8786 22 6 2.4292 -0.4626 -8.8804 23 6 3.4604 -1.3690 -8.7128 24 6 4.1921 -1.3713 -7.5380 25 8 5.2095 -2.2550 -7.3564 26 6 6.3182 -1.8064 -6.5724 27 6 5.8159 -1.1297 -5.3220 28 8 6.4686 -1.1765 -4.3007 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7089 1.1611 3.4845 33 1 0.7376 -2.1442 -1.9996 34 1 2.4629 -2.5817 -1.9866 35 1 1.5295 -2.5968 -0.4711 36 1 3.9016 -1.6021 -3.0168 37 1 2.4483 -1.0887 -3.9070 38 1 3.5409 1.0721 -4.4431 39 1 4.9938 0.5582 -3.5525 40 1 2.6140 1.1509 -5.9204 41 1 1.3198 1.1464 -8.0157 42 1 1.8586 -0.4606 -9.7973 43 1 3.6943 -2.0736 -9.4972 44 1 6.9392 -2.6599 -6.3005 45 1 6.9094 -1.0976 -7.1522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264024588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:52 Heat of formation + Delta-G solvation = -86.054528 kcal Electronic energy + Delta-G solvation = -28693.184162 eV Core-core repulsion = 24675.736213 eV Total energy + Delta-G solvation = -4017.447949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.64493 -40.86169 -39.98157 -38.63704 -37.36481 -36.87079 -34.88604 -33.11901 -31.63717 -31.21194 -30.78883 -28.72135 -27.63160 -27.33153 -25.87147 -24.43129 -23.34576 -22.43845 -20.53142 -20.19258 -20.00480 -18.70222 -18.42410 -18.05380 -17.68515 -17.27296 -16.79506 -16.63309 -16.37522 -16.09118 -15.88933 -15.56937 -15.31743 -15.14511 -14.84992 -14.45788 -14.40597 -14.11805 -13.93599 -13.69866 -13.62391 -13.39214 -13.06044 -12.96578 -12.86012 -12.78307 -12.67886 -12.40336 -12.23018 -12.19920 -12.15450 -12.11274 -11.56401 -11.23928 -11.08951 -10.75623 -10.52099 -9.65594 -9.39826 -8.91446 -8.17991 -6.34601 0.05845 0.30502 1.18137 1.31470 1.38611 1.41339 1.48483 1.68558 2.24982 2.29753 2.46424 2.75430 2.89156 3.09849 3.55916 3.64902 3.74149 3.78165 4.00230 4.02184 4.16606 4.20498 4.28152 4.38145 4.43400 4.54621 4.58040 4.67990 4.70448 4.73964 4.77039 4.88072 4.97250 5.00132 5.03990 5.27702 5.31595 5.44249 5.54793 5.56061 5.63310 5.69894 5.84380 5.99999 6.13332 6.28731 6.56098 6.72361 6.74287 7.24521 7.41023 8.86235 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.002812 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.938774 B = 9956.386582 C =10736.503331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.262 3.738 3 H 0.010 0.990 4 C -0.544 4.544 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.281 1.281 10 H -0.262 1.262 11 H -0.280 1.280 12 N -0.599 5.599 13 C 0.080 3.920 14 C 0.501 3.499 15 O -0.600 6.600 16 C -0.132 4.132 17 C 0.132 3.868 18 N -0.550 5.550 19 C 0.075 3.925 20 C -0.136 4.136 21 C -0.108 4.108 22 C -0.102 4.102 23 C -0.107 4.107 24 C 0.061 3.939 25 O -0.307 6.307 26 C 0.061 3.939 27 C 0.475 3.525 28 O -0.548 6.548 29 H 0.068 0.932 30 H 0.022 0.978 31 H 0.046 0.954 32 H 0.266 0.734 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.130 0.870 41 H 0.154 0.846 42 H 0.166 0.834 43 H 0.160 0.840 44 H 0.166 0.834 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -7.071 -27.512 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.160 3.840 3 H 0.028 0.972 4 C -0.582 4.582 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.206 1.206 10 H -0.186 1.186 11 H -0.205 1.205 12 N -0.329 5.329 13 C -0.062 4.062 14 C 0.289 3.711 15 O -0.482 6.482 16 C -0.172 4.172 17 C 0.009 3.991 18 N -0.274 5.274 19 C -0.018 4.018 20 C -0.156 4.156 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.126 4.126 24 C 0.015 3.985 25 O -0.222 6.222 26 C -0.017 4.017 27 C 0.265 3.735 28 O -0.425 6.425 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.148 0.852 41 H 0.171 0.829 42 H 0.183 0.817 43 H 0.177 0.823 44 H 0.184 0.816 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.390 -6.607 -26.704 27.717 hybrid contribution 0.406 0.223 1.812 1.870 sum 3.796 -6.383 -24.893 25.977 Atomic orbital electron populations 1.21854 0.96818 1.00137 1.00079 1.18552 0.91826 0.92209 0.81450 0.97156 1.21560 1.32124 1.13197 0.91362 0.92383 1.25716 0.95003 0.95633 1.01934 1.70007 1.37123 1.23724 1.24567 0.85532 0.78303 0.79091 0.78236 1.20609 1.18624 1.20544 1.48249 1.48853 1.13360 1.22418 1.21838 1.01114 0.80587 1.02683 1.20917 0.78346 0.86691 0.85102 1.90627 1.59995 1.19369 1.78247 1.21807 1.01750 0.99629 0.94039 1.21194 0.98879 0.94521 0.84468 1.45801 1.19483 1.51215 1.10921 1.18374 0.97128 1.00154 0.86181 1.20966 0.96015 0.98368 1.00242 1.21350 0.99622 0.99677 0.91987 1.21416 0.96452 0.93899 1.00301 1.20882 0.96654 1.00865 0.94209 1.18905 0.93009 0.92051 0.94538 1.86215 1.27910 1.38365 1.69710 1.23359 0.88197 1.03435 0.86686 1.22420 0.80454 0.78288 0.92337 1.90798 1.56790 1.60121 1.34771 0.91339 0.95858 0.93508 0.92526 0.91101 0.90103 0.91145 0.88739 0.86459 0.88039 0.90946 0.85230 0.82875 0.81670 0.82272 0.81646 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.34 8.97 71.98 0.65 -5.70 16 2 C 0.26 13.91 2.64 44.24 0.12 14.03 16 3 H 0.01 0.66 6.90 -2.39 -0.02 0.65 16 4 C -0.54 -30.40 7.99 25.60 0.20 -30.20 16 5 H 0.06 3.17 7.33 -2.91 -0.02 3.15 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -53.47 11.32 21.45 0.24 -53.22 16 8 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 N -0.60 -26.10 2.75 -826.80 -2.28 -28.37 16 13 C 0.08 2.63 9.24 127.77 1.18 3.81 16 14 C 0.50 21.26 7.67 87.66 0.67 21.94 16 15 O -0.60 -30.67 15.31 -3.03 -0.05 -30.72 16 16 C -0.13 -4.07 4.58 29.85 0.14 -3.94 16 17 C 0.13 3.96 4.49 86.38 0.39 4.35 16 18 N -0.55 -14.00 2.72 -630.27 -1.71 -15.71 16 19 C 0.07 1.57 6.39 38.14 0.24 1.81 16 20 C -0.14 -2.47 9.36 22.35 0.21 -2.26 16 21 C -0.11 -1.35 10.04 22.29 0.22 -1.12 16 22 C -0.10 -0.99 10.04 22.30 0.22 -0.77 16 23 C -0.11 -1.32 10.00 22.33 0.22 -1.09 16 24 C 0.06 1.09 6.44 22.59 0.15 1.24 16 25 O -0.31 -5.45 10.45 -93.36 -0.98 -6.43 16 26 C 0.06 0.97 7.17 71.26 0.51 1.48 16 27 C 0.48 12.25 7.67 87.64 0.67 12.92 16 28 O -0.55 -18.54 16.77 -3.09 -0.05 -18.59 16 29 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 30 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 32 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 2.19 6.44 -2.38 -0.02 2.18 16 35 H 0.07 2.50 7.02 -2.39 -0.02 2.48 16 36 H 0.09 2.93 7.40 -2.39 -0.02 2.91 16 37 H 0.12 2.98 8.11 -2.39 -0.02 2.96 16 38 H 0.10 2.88 5.92 -2.39 -0.01 2.87 16 39 H 0.07 2.61 7.44 -2.39 -0.02 2.60 16 40 H 0.13 2.48 6.12 -2.91 -0.02 2.46 16 41 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 43 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 44 H 0.17 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -77.08 369.63 4.46 -72.62 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.01 Total: 16.49 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 6.25 Total: 17.91 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -3.75 Total: -97.31 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -1.07 Total: -55.73 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.08 4.46 -72.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264024588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.435 kcal (2) G-P(sol) polarization free energy of solvation -77.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds