Wall clock time and date at job start Tue Mar 31 2020 17:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.05873 * 2 1 4 4 C 1.54269 * 110.03167 * 121.41677 * 2 1 3 5 5 C 1.54894 * 104.19545 * 142.89375 * 4 2 1 6 6 C 1.55014 * 102.75459 * 322.04605 * 5 4 2 7 7 C 1.53876 * 110.03339 * 238.58093 * 2 1 3 8 8 H 1.09001 * 110.02863 * 0.05051 * 7 2 1 9 9 N 1.46500 * 110.03173 * 121.42739 * 7 2 1 10 10 C 1.34772 * 120.00219 * 204.30766 * 9 7 2 11 11 O 1.21363 * 120.00079 * 0.02562 * 10 9 7 12 12 C 1.49352 * 120.00190 * 180.02562 * 10 9 7 13 13 O 1.21373 * 120.00229 * 0.02562 * 12 10 9 14 14 N 1.34780 * 120.00420 * 180.02562 * 12 10 9 15 15 C 1.39714 * 120.00430 * 184.24513 * 14 12 10 16 16 C 1.39028 * 120.04028 * 324.63376 * 15 14 12 17 17 C 1.38144 * 120.05921 * 179.70219 * 16 15 14 18 18 C 1.38180 * 120.14536 * 0.59319 * 17 16 15 19 19 C 1.38916 * 120.08157 * 359.68197 * 18 17 16 20 20 O 1.35751 * 120.03005 * 179.97438 * 19 18 17 21 21 C 1.34835 * 116.99817 * 185.36087 * 20 19 18 22 22 H 1.07998 * 120.00100 * 354.97191 * 21 20 19 23 23 C 1.38656 * 119.99757 * 174.96550 * 21 20 19 24 24 N 1.31563 * 119.99975 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00056 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47036 * 89.99888 * 25 23 21 27 27 H 1.48495 * 109.47253 * 209.99973 * 25 23 21 28 28 H 1.48500 * 109.47368 * 330.00166 * 25 23 21 29 29 C 1.38762 * 119.93942 * 0.02562 * 19 18 17 30 30 H 1.08996 * 109.46890 * 181.41977 * 1 2 3 31 31 H 1.09000 * 109.47013 * 301.41918 * 1 2 3 32 32 H 1.09001 * 109.46920 * 61.41474 * 1 2 3 33 33 H 1.09004 * 110.48698 * 261.56729 * 4 2 1 34 34 H 1.08990 * 110.48982 * 24.21799 * 4 2 1 35 35 H 1.09007 * 110.75505 * 80.37031 * 5 4 2 36 36 H 1.08997 * 110.75595 * 203.55700 * 5 4 2 37 37 H 1.09001 * 110.50590 * 279.29650 * 6 5 4 38 38 H 1.09001 * 110.52532 * 156.61521 * 6 5 4 39 39 H 0.96999 * 119.99771 * 24.32192 * 9 7 2 40 40 H 0.97003 * 119.99238 * 4.51944 * 14 12 10 41 41 H 1.07997 * 119.96530 * 359.97438 * 16 15 14 42 42 H 1.08003 * 119.92503 * 180.32591 * 17 16 15 43 43 H 1.07996 * 119.96034 * 179.70843 * 18 17 16 44 44 H 0.96992 * 119.99806 * 179.97438 * 24 23 21 45 45 H 1.08005 * 120.07049 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3137 -1.5008 0.7191 6 6 2.8871 -1.9414 -0.7046 7 6 2.0571 -0.7536 -1.2337 8 1 1.2229 -1.1186 -1.8328 9 7 2.9033 0.1310 -2.0385 10 6 3.0712 -0.1101 -3.3537 11 8 2.5211 -1.0599 -3.8716 12 6 3.9343 0.7914 -4.1741 13 8 4.4848 1.7410 -3.6561 14 7 4.1018 0.5506 -5.4895 15 6 4.9783 1.3400 -6.2382 16 6 5.1089 2.6950 -5.9554 17 6 5.9800 3.4746 -6.6915 18 6 6.7149 2.9137 -7.7184 19 6 6.5848 1.5617 -8.0099 20 8 7.3068 1.0117 -9.0194 21 6 7.0524 -0.2773 -9.3223 22 1 6.3619 -0.8476 -8.7188 23 6 7.6773 -0.8705 -10.4086 24 7 7.4288 -2.1281 -10.7045 25 14 8.8722 0.1159 -11.4520 26 1 10.2440 -0.0259 -10.9013 27 1 8.8445 -0.3897 -12.8480 28 1 8.4780 1.5476 -11.4362 29 6 5.7153 0.7740 -7.2688 30 1 -0.3633 -1.0273 0.0255 31 1 -0.3633 0.5357 0.8770 32 1 -0.3633 0.4917 -0.9024 33 1 2.3298 -0.0536 2.0255 34 1 1.3143 -1.4660 1.5966 35 1 4.1710 -0.8291 0.6751 36 1 3.5344 -2.3660 1.3442 37 1 2.2764 -2.8430 -0.6583 38 1 3.7630 -2.1046 -1.3326 39 1 3.3428 0.8902 -1.6246 40 1 3.6108 -0.1683 -5.9173 41 1 4.5321 3.1374 -5.1568 42 1 6.0837 4.5259 -6.4665 43 1 7.3915 3.5270 -8.2950 44 1 7.8656 -2.5429 -11.4646 45 1 5.6128 -0.2775 -7.4933 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264368137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:03 Heat of formation + Delta-G solvation = -95.681402 kcal Electronic energy + Delta-G solvation = -27583.359042 eV Core-core repulsion = 23565.493640 eV Total energy + Delta-G solvation = -4017.865402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.24677 -41.06604 -40.25059 -39.02510 -38.26908 -36.01923 -34.71669 -34.41053 -32.16397 -31.21078 -30.62975 -29.15189 -27.32810 -26.60624 -25.33005 -23.46862 -23.17253 -21.93332 -21.18346 -21.05349 -20.03551 -19.58915 -19.09343 -18.06258 -17.37887 -17.12660 -17.05953 -16.82273 -16.23484 -16.10916 -15.75476 -15.66540 -15.56543 -15.00479 -14.93526 -14.71559 -14.51316 -14.24173 -14.02569 -13.82844 -13.39772 -13.25894 -13.18229 -12.76253 -12.65605 -12.56669 -12.49350 -12.32782 -12.06201 -11.95423 -11.74482 -11.59901 -11.54910 -11.48610 -11.36764 -10.89031 -10.76437 -10.32299 -9.49009 -9.03760 -8.50553 -6.24394 -0.08279 0.54229 0.63518 1.13717 1.33245 1.37469 1.53209 1.97314 2.28190 2.45196 2.74269 3.00643 3.12055 3.23851 3.46385 3.60813 3.88588 4.05995 4.25256 4.25599 4.35435 4.40743 4.43525 4.54161 4.54400 4.56474 4.59560 4.67286 4.85314 4.88614 4.93575 4.95559 5.09402 5.19046 5.20562 5.26093 5.28483 5.29716 5.36898 5.39724 5.50300 5.57612 5.71803 5.79356 5.92044 6.15690 6.20606 6.56712 6.77753 6.83252 7.54819 8.60781 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.002284 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.972053 B =12256.639939 C =13068.775824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.088 0.912 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.137 4.137 7 C 0.136 3.864 8 H 0.085 0.915 9 N -0.676 5.676 10 C 0.516 3.484 11 O -0.539 6.539 12 C 0.508 3.492 13 O -0.513 6.513 14 N -0.638 5.638 15 C 0.170 3.830 16 C -0.185 4.185 17 C -0.050 4.050 18 C -0.193 4.193 19 C 0.139 3.861 20 O -0.237 6.237 21 C -0.401 4.401 22 H 0.081 0.919 23 C 0.011 3.989 24 N -0.922 5.922 25 Si 0.971 3.029 26 H -0.266 1.266 27 H -0.269 1.269 28 H -0.259 1.259 29 C -0.251 4.251 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.420 0.580 40 H 0.424 0.576 41 H 0.142 0.858 42 H 0.167 0.833 43 H 0.139 0.861 44 H 0.285 0.715 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 6.942 23.958 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.176 4.176 7 C 0.032 3.968 8 H 0.103 0.897 9 N -0.329 5.329 10 C 0.295 3.705 11 O -0.417 6.417 12 C 0.290 3.710 13 O -0.388 6.388 14 N -0.284 5.284 15 C 0.077 3.923 16 C -0.206 4.206 17 C -0.068 4.068 18 C -0.212 4.212 19 C 0.089 3.911 20 O -0.144 6.144 21 C -0.477 4.477 22 H 0.098 0.902 23 C -0.188 4.188 24 N -0.563 5.563 25 Si 0.793 3.207 26 H -0.191 1.191 27 H -0.194 1.194 28 H -0.183 1.183 29 C -0.273 4.273 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.258 0.742 40 H 0.263 0.737 41 H 0.160 0.840 42 H 0.184 0.816 43 H 0.156 0.844 44 H 0.095 0.905 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.032 6.813 23.751 27.483 hybrid contribution 0.420 -0.654 -0.936 1.217 sum -11.612 6.159 22.815 26.330 Atomic orbital electron populations 1.21861 0.93335 1.02557 1.02368 1.22055 0.96985 0.99901 0.92727 0.89384 1.22456 0.96965 0.99236 0.96444 1.22547 0.98189 1.00611 0.94800 1.22816 0.99515 0.97799 0.97445 1.22082 0.92507 0.90138 0.92051 0.89699 1.45942 1.48717 1.31463 1.06771 1.19743 0.81799 0.84812 0.84105 1.90790 1.48351 1.30194 1.72318 1.20427 0.82313 0.85666 0.82593 1.90739 1.47375 1.29101 1.71595 1.43142 1.42067 1.34837 1.08328 1.17492 0.91890 0.90759 0.92202 1.21100 1.04392 0.91143 1.03934 1.21054 0.92968 1.00767 0.92053 1.20642 1.06322 0.91271 1.02962 1.19351 0.90450 0.93189 0.88079 1.83546 1.56138 1.27402 1.47334 1.20686 1.28468 0.84200 1.14319 0.90170 1.25300 0.99461 0.96533 0.97518 1.69733 1.44230 1.12570 1.29748 0.85205 0.78557 0.79365 0.77553 1.19134 1.19378 1.18259 1.20925 1.03509 1.00737 1.02110 0.91991 0.90834 0.93180 0.89972 0.90242 0.91596 0.90405 0.89867 0.93128 0.74221 0.73743 0.83993 0.81570 0.84359 0.90548 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.85 71.98 0.64 -0.66 16 2 C -0.10 -0.98 3.27 -10.07 -0.03 -1.02 16 3 H 0.09 0.80 7.61 -2.38 -0.02 0.78 16 4 C -0.11 -0.92 6.36 31.67 0.20 -0.71 16 5 C -0.12 -1.36 6.91 31.93 0.22 -1.14 16 6 C -0.14 -2.13 6.54 31.71 0.21 -1.92 16 7 C 0.14 2.13 2.89 45.72 0.13 2.26 16 8 H 0.08 1.58 7.12 -2.39 -0.02 1.56 16 9 N -0.68 -12.69 5.03 -440.53 -2.22 -14.91 16 10 C 0.52 13.28 7.88 87.24 0.69 13.97 16 11 O -0.54 -16.45 16.15 -3.29 -0.05 -16.50 16 12 C 0.51 14.84 7.72 87.24 0.67 15.51 16 13 O -0.51 -15.75 13.93 -3.32 -0.05 -15.79 16 14 N -0.64 -20.52 5.32 -304.89 -1.62 -22.14 16 15 C 0.17 6.32 6.29 38.20 0.24 6.56 16 16 C -0.19 -6.15 8.69 22.44 0.19 -5.95 16 17 C -0.05 -1.54 10.03 22.23 0.22 -1.31 16 18 C -0.19 -7.14 9.99 22.42 0.22 -6.91 16 19 C 0.14 6.43 6.65 22.56 0.15 6.58 16 20 O -0.24 -12.66 8.58 -22.80 -0.20 -12.85 16 21 C -0.40 -23.39 9.95 67.92 0.68 -22.71 16 22 H 0.08 4.92 5.43 -2.91 -0.02 4.90 16 23 C 0.01 0.60 5.49 84.83 0.47 1.07 16 24 N -0.92 -55.02 13.96 21.61 0.30 -54.72 16 25 Si 0.97 44.98 28.62 68.60 1.96 46.95 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 29 C -0.25 -11.11 9.08 22.52 0.20 -10.91 16 30 H 0.06 0.54 8.12 -2.39 -0.02 0.52 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.55 7.84 -2.39 -0.02 0.53 16 35 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.01 8.04 -2.39 -0.02 0.99 16 39 H 0.42 6.63 7.78 -92.71 -0.72 5.91 16 40 H 0.42 12.94 8.30 -92.71 -0.77 12.17 16 41 H 0.14 4.33 6.25 -2.91 -0.02 4.32 16 42 H 0.17 3.62 8.06 -2.91 -0.02 3.60 16 43 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 44 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.12 5.60 5.63 -2.91 -0.02 5.59 16 Total: -1.00 -68.97 374.89 2.79 -66.18 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.45 Total: 31.09 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 5.10 Total: -7.31 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -3.53 Total: -91.77 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.30 Total: -45.15 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.96 Total: 46.95 kcal Total: -68.97 2.79 -66.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264368137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.498 kcal (2) G-P(sol) polarization free energy of solvation -68.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds