Wall clock time and date at job start Tue Mar 31 2020 17:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.43849 * 2 1 4 4 C 1.54888 * 110.59371 * 237.38133 * 2 1 3 5 5 C 1.54896 * 102.74722 * 203.32573 * 4 2 1 6 6 C 1.54259 * 104.19365 * 37.94193 * 5 4 2 7 7 C 1.53872 * 106.60319 * 336.39244 * 6 5 4 8 8 H 1.09000 * 110.07228 * 240.69310 * 7 6 5 9 9 N 1.46498 * 110.03249 * 119.28308 * 7 6 5 10 10 C 1.34776 * 119.99825 * 87.83813 * 9 7 6 11 11 O 1.21355 * 120.00274 * 359.97438 * 10 9 7 12 12 C 1.49360 * 119.99865 * 179.97438 * 10 9 7 13 13 O 1.21376 * 119.99818 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99865 * 179.97438 * 12 10 9 15 15 C 1.39724 * 119.99774 * 174.99759 * 14 12 10 16 16 C 1.39020 * 120.03904 * 146.36445 * 15 14 12 17 17 C 1.38144 * 120.05300 * 179.97438 * 16 15 14 18 18 C 1.38172 * 120.15225 * 0.02562 * 17 16 15 19 19 C 1.38929 * 120.08077 * 359.97438 * 18 17 16 20 20 O 1.35740 * 120.03218 * 180.02562 * 19 18 17 21 21 C 1.34833 * 117.00038 * 5.91474 * 20 19 18 22 22 H 1.08000 * 120.00351 * 5.40811 * 21 20 19 23 23 C 1.38654 * 120.00282 * 185.40565 * 21 20 19 24 24 N 1.31562 * 119.99679 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00371 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46965 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.47096 * 119.99698 * 25 23 21 28 28 H 1.48495 * 109.47541 * 240.00281 * 25 23 21 29 29 C 1.38756 * 119.93218 * 359.72721 * 19 18 17 30 30 H 1.08999 * 109.46707 * 297.46082 * 1 2 3 31 31 H 1.08992 * 109.47136 * 57.45723 * 1 2 3 32 32 H 1.08990 * 109.47320 * 177.46105 * 1 2 3 33 33 H 1.09002 * 110.76205 * 321.63695 * 4 2 1 34 34 H 1.09001 * 110.75461 * 84.82984 * 4 2 1 35 35 H 1.09000 * 110.48583 * 156.62741 * 5 4 2 36 36 H 1.09003 * 110.48481 * 279.13252 * 5 4 2 37 37 H 1.09003 * 110.03063 * 217.10438 * 6 5 4 38 38 H 1.09007 * 110.03246 * 95.67990 * 6 5 4 39 39 H 0.96994 * 120.00003 * 267.83505 * 9 7 6 40 40 H 0.97004 * 119.99724 * 354.71598 * 14 12 10 41 41 H 1.07991 * 119.97570 * 0.02562 * 16 15 14 42 42 H 1.08004 * 119.92121 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.95995 * 180.02562 * 18 17 16 44 44 H 0.96997 * 119.99527 * 180.02562 * 24 23 21 45 45 H 1.08002 * 120.06879 * 180.29708 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0213 0.0000 4 6 2.0748 -0.7816 -1.2212 5 6 3.4937 -1.1948 -0.7572 6 6 3.3184 -1.5370 0.7367 7 6 2.0699 -0.7774 1.2182 8 1 2.3383 -0.0836 2.0149 9 7 1.0599 -1.7244 1.6970 10 6 1.0738 -2.1321 2.9816 11 8 1.9231 -1.7151 3.7414 12 6 0.0437 -3.0972 3.4699 13 8 -0.8060 -3.5139 2.7100 14 7 0.0579 -3.5053 4.7543 15 6 -0.9650 -4.3250 5.2382 16 6 -0.6892 -5.2840 6.2061 17 6 -1.7004 -6.0942 6.6851 18 6 -2.9881 -5.9548 6.2040 19 6 -3.2704 -4.9984 5.2367 20 8 -4.5359 -4.8619 4.7651 21 6 -5.4944 -5.5985 5.3624 22 1 -5.2557 -6.1924 6.2322 23 6 -6.7867 -5.5934 4.8599 24 7 -7.0775 -4.8702 3.8000 25 14 -8.1148 -6.6133 5.6877 26 1 -7.5349 -7.3303 6.8516 27 1 -9.2076 -5.7207 6.1511 28 1 -8.6580 -7.5990 4.7190 29 6 -2.2586 -4.1785 4.7577 30 1 -0.3633 0.4739 0.9119 31 1 -0.3633 0.5528 -0.8662 32 1 -0.3633 -1.0266 -0.0455 33 1 1.4626 -1.6609 -1.4217 34 1 2.1247 -0.1389 -2.1002 35 1 3.8368 -2.0687 -1.3112 36 1 4.1920 -0.3671 -0.8817 37 1 4.1935 -1.2118 1.2994 38 1 3.1729 -2.6103 0.8593 39 1 0.3813 -2.0580 1.0896 40 1 0.7804 -3.2333 5.3417 41 1 0.3161 -5.3952 6.5844 42 1 -1.4837 -6.8389 7.4367 43 1 -3.7764 -6.5896 6.5809 44 1 -7.9816 -4.8664 3.4487 45 1 -2.4765 -3.4310 4.0092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264368140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:08 Heat of formation + Delta-G solvation = -71.836135 kcal Electronic energy + Delta-G solvation = -27813.448038 eV Core-core repulsion = 23796.616644 eV Total energy + Delta-G solvation = -4016.831393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.02595 -39.75684 -38.70773 -37.94988 -36.62616 -34.47708 -33.56607 -32.27165 -31.65464 -29.69262 -28.79144 -28.24167 -25.63466 -25.33399 -24.55886 -22.22323 -21.43534 -20.97390 -20.35769 -19.84921 -18.78515 -18.09708 -17.12842 -16.92855 -15.96448 -15.77911 -15.70794 -15.24791 -15.11689 -14.80577 -14.62955 -14.27425 -14.07565 -13.88350 -13.70808 -13.53466 -13.13399 -12.85015 -12.64557 -12.59140 -12.14265 -11.83598 -11.66236 -11.57891 -11.49891 -11.29488 -11.18588 -11.12552 -11.02642 -10.95235 -10.88126 -10.80037 -10.44601 -9.89850 -9.66348 -9.42480 -9.25965 -8.84314 -7.78114 -7.23530 -6.44783 -4.03916 1.25728 2.11524 2.29765 2.36861 3.12246 3.13888 3.19766 3.24976 3.59553 3.96657 4.06486 4.22459 4.40714 4.46180 4.55769 4.89345 4.99857 5.09397 5.10498 5.14248 5.16394 5.26920 5.28799 5.38690 5.53937 5.58365 5.59080 5.71475 5.77592 5.78360 5.85265 5.93512 6.01620 6.03941 6.13104 6.16444 6.29365 6.54135 6.68595 6.94800 7.00986 7.04990 7.30640 7.41427 7.46440 7.66921 7.77228 7.99673 8.07350 9.00265 9.70464 10.73084 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.002503 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.058895 B =11184.962681 C =12557.614717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.136 4.136 7 C 0.141 3.859 8 H 0.095 0.905 9 N -0.693 5.693 10 C 0.513 3.487 11 O -0.522 6.522 12 C 0.498 3.502 13 O -0.490 6.490 14 N -0.638 5.638 15 C 0.171 3.829 16 C -0.230 4.230 17 C -0.057 4.057 18 C -0.241 4.241 19 C 0.167 3.833 20 O -0.173 6.173 21 C -0.391 4.391 22 H 0.094 0.906 23 C 0.039 3.961 24 N -0.860 5.860 25 Si 0.942 3.058 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.186 4.186 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.414 0.586 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.270 0.730 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.787 7.541 -5.937 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.162 4.162 6 C -0.174 4.174 7 C 0.037 3.963 8 H 0.113 0.887 9 N -0.349 5.349 10 C 0.293 3.707 11 O -0.398 6.398 12 C 0.279 3.721 13 O -0.363 6.363 14 N -0.284 5.284 15 C 0.078 3.922 16 C -0.251 4.251 17 C -0.076 4.076 18 C -0.261 4.261 19 C 0.113 3.887 20 O -0.076 6.076 21 C -0.468 4.468 22 H 0.111 0.889 23 C -0.166 4.166 24 N -0.494 5.494 25 Si 0.767 3.233 26 H -0.191 1.191 27 H -0.201 1.201 28 H -0.201 1.201 29 C -0.207 4.207 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.254 0.746 40 H 0.255 0.745 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.147 0.853 44 H 0.080 0.920 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.477 7.779 -6.303 21.015 hybrid contribution -0.570 -0.623 0.460 0.962 sum 17.907 7.156 -5.843 20.149 Atomic orbital electron populations 1.21797 0.94121 1.02284 1.02530 1.22284 0.96474 0.99581 0.93856 0.89246 1.22638 0.96189 1.00029 0.97250 1.22349 0.97126 1.01328 0.95370 1.22613 0.97593 1.01051 0.96187 1.21762 0.87352 0.90418 0.96812 0.88677 1.46054 1.32990 1.45374 1.10466 1.20114 0.85122 0.82249 0.83184 1.90744 1.37690 1.56150 1.55232 1.20153 0.85956 0.82833 0.83169 1.90867 1.36819 1.54039 1.54554 1.43034 1.26090 1.48449 1.10832 1.17156 0.86350 0.92194 0.96473 1.20293 0.99257 1.00730 1.04813 1.20525 0.92200 0.97117 0.97762 1.21221 0.97576 1.03700 1.03559 1.19082 0.86157 0.92069 0.91435 1.84002 1.11475 1.58649 1.53427 1.21394 0.87314 1.26561 1.11484 0.88908 1.25315 0.97544 0.97476 0.96231 1.70063 1.20719 1.37383 1.21252 0.85636 0.79868 0.78991 0.78854 1.19055 1.20145 1.20136 1.19992 0.89753 1.04296 1.06654 0.92027 0.91913 0.92185 0.91071 0.91115 0.91410 0.91388 0.90842 0.91008 0.74629 0.74550 0.87069 0.86804 0.85281 0.92038 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.49 37.16 0.32 -0.86 16 2 C -0.10 -0.72 3.41 -88.96 -0.30 -1.02 16 3 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.12 -0.78 6.33 -24.74 -0.16 -0.94 16 5 C -0.12 -0.78 6.83 -25.07 -0.17 -0.95 16 6 C -0.14 -1.09 6.59 -25.62 -0.17 -1.26 16 7 C 0.14 1.24 3.12 -66.81 -0.21 1.04 16 8 H 0.10 0.92 7.56 -51.93 -0.39 0.53 16 9 N -0.69 -7.54 4.33 -53.18 -0.23 -7.77 16 10 C 0.51 6.91 7.88 -11.63 -0.09 6.82 16 11 O -0.52 -7.61 16.14 5.49 0.09 -7.52 16 12 C 0.50 7.96 7.62 -11.63 -0.09 7.87 16 13 O -0.49 -9.31 14.19 5.47 0.08 -9.23 16 14 N -0.64 -9.97 5.32 -10.31 -0.05 -10.03 16 15 C 0.17 3.22 6.26 -83.77 -0.52 2.69 16 16 C -0.23 -3.95 9.96 -39.33 -0.39 -4.34 16 17 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 18 C -0.24 -5.23 9.13 -39.35 -0.36 -5.59 16 19 C 0.17 4.15 6.64 -39.13 -0.26 3.89 16 20 O -0.17 -5.02 9.75 0.07 0.00 -5.02 16 21 C -0.39 -10.98 9.44 30.89 0.29 -10.69 16 22 H 0.09 2.39 5.29 -52.49 -0.28 2.11 16 23 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 24 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 25 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 29 C -0.19 -4.20 8.59 -39.19 -0.34 -4.54 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.50 6.22 -51.93 -0.32 0.18 16 33 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.66 7.92 -51.93 -0.41 0.25 16 39 H 0.41 4.40 5.92 -40.82 -0.24 4.16 16 40 H 0.42 5.38 8.30 -40.82 -0.34 5.04 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.13 3.05 6.45 -52.49 -0.34 2.71 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -32.71 372.95 -7.69 -40.41 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.98 Total: 11.02 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -2.95 Total: -8.33 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.47 Total: -42.44 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.17 Total: -21.77 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.71 -7.69 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264368140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.430 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds