Wall clock time and date at job start Tue Mar 31 2020 17:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.69915 * 2 1 4 4 C 1.53544 * 109.58100 * 120.34680 * 2 1 3 5 5 N 1.47292 * 107.58302 * 177.99175 * 4 2 1 6 6 C 1.34784 * 121.14706 * 138.01613 * 5 4 2 7 7 O 1.21388 * 119.99983 * 186.99629 * 6 5 4 8 8 C 1.49331 * 119.99886 * 6.99021 * 6 5 4 9 9 O 1.21368 * 119.99987 * 6.27616 * 8 6 5 10 10 N 1.34773 * 119.99991 * 186.27373 * 8 6 5 11 11 C 1.46502 * 119.99950 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.47323 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47367 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47058 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99940 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99678 * 179.72463 * 14 13 12 17 17 N 1.31513 * 120.00066 * 0.27682 * 16 14 13 18 18 Si 1.86804 * 119.99645 * 180.27965 * 16 14 13 19 19 H 1.48497 * 109.47279 * 60.00054 * 18 16 14 20 20 H 1.48499 * 109.46592 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47069 * 299.99882 * 18 16 14 22 22 C 1.40302 * 117.70750 * 318.29073 * 5 4 2 23 23 C 1.38764 * 120.00972 * 193.93730 * 22 5 4 24 24 C 1.38230 * 119.84252 * 179.97438 * 23 22 5 25 25 C 1.38300 * 120.07513 * 359.70735 * 24 23 22 26 26 C 1.38209 * 120.30658 * 359.94907 * 25 24 23 27 27 C 1.38703 * 120.05430 * 0.02562 * 26 25 24 28 28 O 1.35885 * 119.66324 * 180.15572 * 27 26 25 29 29 H 1.08999 * 109.47242 * 299.65424 * 1 2 3 30 30 H 1.09002 * 109.47003 * 59.65065 * 1 2 3 31 31 H 1.08999 * 109.47338 * 179.65031 * 1 2 3 32 32 H 1.09001 * 109.83366 * 58.47593 * 4 2 1 33 33 H 1.08997 * 109.83339 * 297.51158 * 4 2 1 34 34 H 0.96999 * 120.00289 * 0.02562 * 10 8 6 35 35 H 1.08996 * 109.47425 * 60.00248 * 11 10 8 36 36 H 1.09003 * 109.47106 * 300.00158 * 11 10 8 37 37 H 1.09005 * 109.46813 * 59.99882 * 12 11 10 38 38 H 1.09003 * 109.46954 * 300.00001 * 12 11 10 39 39 H 1.09005 * 109.46695 * 59.99892 * 13 12 11 40 40 H 1.08997 * 109.47373 * 300.00388 * 13 12 11 41 41 H 0.97000 * 120.00227 * 179.97438 * 17 16 14 42 42 H 1.08004 * 120.09272 * 359.64494 * 23 22 5 43 43 H 1.07996 * 119.95968 * 179.71918 * 24 23 22 44 44 H 1.07999 * 119.84832 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.96856 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0446 -0.7309 1.2484 5 7 3.5158 -0.7476 1.1795 6 6 4.2677 -0.5105 2.2727 7 8 5.4724 -0.4033 2.1693 8 6 3.6186 -0.3795 3.6112 9 8 2.4312 -0.5987 3.7339 10 7 4.3514 -0.0179 4.6830 11 6 3.7148 0.1100 5.9962 12 6 4.7605 0.5293 7.0314 13 6 4.0955 0.6635 8.4027 14 6 5.1258 1.0759 9.4224 15 1 6.1520 1.2275 9.1222 16 6 4.7568 1.2657 10.7373 17 7 3.5069 1.0815 11.1026 18 14 6.0323 1.7844 11.9996 19 1 6.6219 3.0876 11.6008 20 1 5.3856 1.9205 13.3295 21 1 7.1030 0.7580 12.0720 22 6 4.1076 -1.0129 -0.0646 23 6 5.4574 -1.3263 -0.1384 24 6 6.0368 -1.5877 -1.3659 25 6 5.2717 -1.5428 -2.5170 26 6 3.9253 -1.2381 -2.4482 27 6 3.3345 -0.9748 -1.2212 28 8 2.0095 -0.6792 -1.1624 29 1 -0.3634 0.5084 0.8931 30 1 -0.3633 0.5193 -0.8869 31 1 -0.3634 -1.0276 -0.0063 32 1 1.6634 -1.7520 1.2626 33 1 1.7223 -0.2024 2.1455 34 1 5.3003 0.1576 4.5849 35 1 3.2811 -0.8475 6.2847 36 1 2.9296 0.8645 5.9474 37 1 5.1938 1.4870 6.7427 38 1 5.5460 -0.2249 7.0803 39 1 3.6619 -0.2940 8.6915 40 1 3.3103 1.4178 8.3535 41 1 3.2474 1.2146 12.0277 42 1 6.0552 -1.3608 0.7605 43 1 7.0881 -1.8273 -1.4259 44 1 5.7282 -1.7472 -3.4742 45 1 3.3329 -1.2050 -3.3506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264780133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:27 Heat of formation + Delta-G solvation = -67.486738 kcal Electronic energy + Delta-G solvation = -27831.243575 eV Core-core repulsion = 23814.600786 eV Total energy + Delta-G solvation = -4016.642789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94193 -40.24918 -38.79631 -37.87257 -36.37623 -35.36563 -33.42118 -32.98030 -31.36358 -30.82815 -29.49098 -27.50966 -26.92307 -25.15397 -23.68439 -23.11965 -22.46791 -20.98382 -20.78319 -19.88418 -18.70320 -17.88012 -17.73855 -16.80561 -16.45509 -16.37727 -16.21420 -15.55544 -15.41632 -15.09587 -14.65025 -14.48905 -14.33401 -14.11129 -13.95277 -13.92473 -13.48027 -13.22664 -12.87227 -12.50590 -12.35878 -12.17720 -12.03149 -11.95964 -11.91272 -11.55125 -11.33393 -11.03232 -10.93190 -10.83275 -10.66388 -10.49686 -9.97531 -9.70506 -9.37856 -9.19962 -9.14251 -8.77529 -8.42113 -8.16547 -6.07006 -4.10317 0.69073 1.10391 1.42423 1.87274 2.78386 2.89723 3.13435 3.29500 3.34321 3.36511 3.53124 4.02404 4.13503 4.40434 4.43803 4.50137 4.54241 4.77087 4.94181 4.99541 5.08200 5.15732 5.22526 5.28428 5.28969 5.45915 5.47323 5.58123 5.59659 5.69528 5.74794 5.96406 5.97295 6.08402 6.14320 6.25789 6.44669 6.49230 6.60136 6.65037 6.86942 7.00089 7.12607 7.44586 7.55603 7.66736 7.81163 7.90848 8.31575 8.95796 9.54257 11.04153 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.002105 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.857145 B =13299.879765 C =14415.385082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.078 0.922 4 C 0.052 3.948 5 N -0.530 5.530 6 C 0.510 3.490 7 O -0.496 6.496 8 C 0.505 3.495 9 O -0.518 6.518 10 N -0.684 5.684 11 C 0.113 3.887 12 C -0.123 4.123 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.073 3.927 23 C -0.111 4.111 24 C -0.131 4.131 25 C -0.104 4.104 26 C -0.131 4.131 27 C 0.103 3.897 28 O -0.311 6.311 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.162 0.838 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -4.234 -28.047 28.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 H 0.095 0.905 4 C -0.069 4.069 5 N -0.255 5.255 6 C 0.295 3.705 7 O -0.370 6.370 8 C 0.285 3.715 9 O -0.396 6.396 10 N -0.335 5.335 11 C -0.009 4.009 12 C -0.161 4.161 13 C -0.012 4.012 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.021 4.021 23 C -0.131 4.131 24 C -0.149 4.149 25 C -0.123 4.123 26 C -0.150 4.150 27 C 0.056 3.944 28 O -0.226 6.226 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.165 0.835 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.179 0.821 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.766 -4.335 -27.847 28.318 hybrid contribution 1.130 0.375 0.884 1.483 sum -1.636 -3.960 -26.963 27.301 Atomic orbital electron populations 1.21754 0.90493 1.04012 1.03743 1.22934 0.96668 0.95427 0.83428 0.90452 1.23594 0.76983 1.04379 1.01982 1.45437 1.08199 1.65455 1.06402 1.20470 0.86856 0.77672 0.85507 1.90638 1.13975 1.46926 1.85494 1.19696 0.87042 0.79579 0.85172 1.90623 1.14548 1.49798 1.84632 1.46102 1.13742 1.65304 1.08374 1.21920 0.97277 1.02341 0.79354 1.21944 0.97181 1.00541 0.96460 1.19024 0.96065 0.97606 0.88550 1.21149 0.95195 1.46725 0.93198 0.92615 1.25026 0.95328 0.95433 0.98634 1.69945 1.16343 1.49223 1.17744 0.86626 0.81522 0.79181 0.80486 1.20215 1.21256 1.20197 1.18032 0.94137 1.06198 0.83707 1.21767 0.92911 0.97865 1.00508 1.21074 1.00302 1.01760 0.91806 1.20987 0.92831 0.99572 0.98884 1.20416 0.94939 1.04660 0.94949 1.18543 0.83133 1.00466 0.92270 1.86023 1.20434 1.73653 1.42441 0.89541 0.90843 0.90987 0.89060 0.83467 0.75137 0.90820 0.90834 0.92370 0.92338 0.96182 0.96185 0.92819 0.82052 0.85308 0.85238 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.58 37.16 0.36 -0.56 16 2 C 0.07 0.66 3.58 -26.45 -0.09 0.56 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.54 5.19 -3.33 -0.02 0.53 16 5 N -0.53 -6.60 3.01 -112.89 -0.34 -6.94 16 6 C 0.51 6.87 7.64 -11.64 -0.09 6.78 16 7 O -0.50 -7.13 13.38 5.46 0.07 -7.05 16 8 C 0.51 7.05 7.73 -11.64 -0.09 6.96 16 9 O -0.52 -7.79 13.28 5.48 0.07 -7.72 16 10 N -0.68 -9.48 5.55 -60.77 -0.34 -9.81 16 11 C 0.11 1.80 5.67 -4.04 -0.02 1.77 16 12 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 13 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 18 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.07 0.91 6.32 -83.44 -0.53 0.38 16 23 C -0.11 -1.32 8.93 -39.39 -0.35 -1.67 16 24 C -0.13 -1.23 10.04 -39.56 -0.40 -1.63 16 25 C -0.10 -0.87 10.03 -39.57 -0.40 -1.26 16 26 C -0.13 -1.22 9.97 -39.42 -0.39 -1.62 16 27 C 0.10 1.17 6.51 -39.06 -0.25 0.92 16 28 O -0.31 -3.36 9.97 -19.38 -0.19 -3.55 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.15 1.61 5.00 -52.09 -0.26 1.35 16 34 H 0.41 5.19 7.96 -40.82 -0.32 4.87 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.16 2.08 5.20 -52.52 -0.27 1.81 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -31.19 373.29 -8.67 -39.86 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.32 Total: 2.81 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.97 Total: -3.90 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.06 Total: -42.26 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.32 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.19 -8.67 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264780133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.624 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds