Wall clock time and date at job start Tue Mar 31 2020 17:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.69915 * 2 1 4 4 C 1.53544 * 109.58100 * 120.34680 * 2 1 3 5 5 N 1.47292 * 107.58302 * 177.99175 * 4 2 1 6 6 C 1.34784 * 121.14706 * 138.01613 * 5 4 2 7 7 O 1.21388 * 119.99983 * 186.99629 * 6 5 4 8 8 C 1.49331 * 119.99886 * 6.99021 * 6 5 4 9 9 O 1.21368 * 119.99987 * 6.27616 * 8 6 5 10 10 N 1.34773 * 119.99991 * 186.27373 * 8 6 5 11 11 C 1.46502 * 119.99950 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.47323 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47367 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47058 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99940 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99678 * 179.72463 * 14 13 12 17 17 N 1.31513 * 120.00066 * 0.27682 * 16 14 13 18 18 Si 1.86804 * 119.99645 * 180.27965 * 16 14 13 19 19 H 1.48497 * 109.47279 * 60.00054 * 18 16 14 20 20 H 1.48499 * 109.46592 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47069 * 299.99882 * 18 16 14 22 22 C 1.40302 * 117.70750 * 318.29073 * 5 4 2 23 23 C 1.38764 * 120.00972 * 193.93730 * 22 5 4 24 24 C 1.38230 * 119.84252 * 179.97438 * 23 22 5 25 25 C 1.38300 * 120.07513 * 359.70735 * 24 23 22 26 26 C 1.38209 * 120.30658 * 359.94907 * 25 24 23 27 27 C 1.38703 * 120.05430 * 0.02562 * 26 25 24 28 28 O 1.35885 * 119.66324 * 180.15572 * 27 26 25 29 29 H 1.08999 * 109.47242 * 299.65424 * 1 2 3 30 30 H 1.09002 * 109.47003 * 59.65065 * 1 2 3 31 31 H 1.08999 * 109.47338 * 179.65031 * 1 2 3 32 32 H 1.09001 * 109.83366 * 58.47593 * 4 2 1 33 33 H 1.08997 * 109.83339 * 297.51158 * 4 2 1 34 34 H 0.96999 * 120.00289 * 0.02562 * 10 8 6 35 35 H 1.08996 * 109.47425 * 60.00248 * 11 10 8 36 36 H 1.09003 * 109.47106 * 300.00158 * 11 10 8 37 37 H 1.09005 * 109.46813 * 59.99882 * 12 11 10 38 38 H 1.09003 * 109.46954 * 300.00001 * 12 11 10 39 39 H 1.09005 * 109.46695 * 59.99892 * 13 12 11 40 40 H 1.08997 * 109.47373 * 300.00388 * 13 12 11 41 41 H 0.97000 * 120.00227 * 179.97438 * 17 16 14 42 42 H 1.08004 * 120.09272 * 359.64494 * 23 22 5 43 43 H 1.07996 * 119.95968 * 179.71918 * 24 23 22 44 44 H 1.07999 * 119.84832 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.96856 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0446 -0.7309 1.2484 5 7 3.5158 -0.7476 1.1795 6 6 4.2677 -0.5105 2.2727 7 8 5.4724 -0.4033 2.1693 8 6 3.6186 -0.3795 3.6112 9 8 2.4312 -0.5987 3.7339 10 7 4.3514 -0.0179 4.6830 11 6 3.7148 0.1100 5.9962 12 6 4.7605 0.5293 7.0314 13 6 4.0955 0.6635 8.4027 14 6 5.1258 1.0759 9.4224 15 1 6.1520 1.2275 9.1222 16 6 4.7568 1.2657 10.7373 17 7 3.5069 1.0815 11.1026 18 14 6.0323 1.7844 11.9996 19 1 6.6219 3.0876 11.6008 20 1 5.3856 1.9205 13.3295 21 1 7.1030 0.7580 12.0720 22 6 4.1076 -1.0129 -0.0646 23 6 5.4574 -1.3263 -0.1384 24 6 6.0368 -1.5877 -1.3659 25 6 5.2717 -1.5428 -2.5170 26 6 3.9253 -1.2381 -2.4482 27 6 3.3345 -0.9748 -1.2212 28 8 2.0095 -0.6792 -1.1624 29 1 -0.3634 0.5084 0.8931 30 1 -0.3633 0.5193 -0.8869 31 1 -0.3634 -1.0276 -0.0063 32 1 1.6634 -1.7520 1.2626 33 1 1.7223 -0.2024 2.1455 34 1 5.3003 0.1576 4.5849 35 1 3.2811 -0.8475 6.2847 36 1 2.9296 0.8645 5.9474 37 1 5.1938 1.4870 6.7427 38 1 5.5460 -0.2249 7.0803 39 1 3.6619 -0.2940 8.6915 40 1 3.3103 1.4178 8.3535 41 1 3.2474 1.2146 12.0277 42 1 6.0552 -1.3608 0.7605 43 1 7.0881 -1.8273 -1.4259 44 1 5.7282 -1.7472 -3.4742 45 1 3.3329 -1.2050 -3.3506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264780133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:26 Heat of formation + Delta-G solvation = -86.676535 kcal Electronic energy + Delta-G solvation = -27832.075707 eV Core-core repulsion = 23814.600786 eV Total energy + Delta-G solvation = -4017.474921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.86426 -41.23874 -39.83639 -38.65073 -37.51934 -36.58899 -35.22390 -33.67321 -33.10052 -31.62687 -30.29977 -29.00995 -27.87646 -26.39211 -24.95658 -23.90543 -23.65818 -22.42420 -21.73776 -21.01191 -19.55748 -18.92928 -18.65292 -18.43493 -17.80608 -17.30480 -17.18742 -16.72161 -16.44116 -16.34641 -16.19177 -15.60208 -15.27022 -15.18334 -14.92385 -14.84111 -14.35333 -14.27391 -14.03883 -13.79686 -13.56872 -13.46155 -13.14816 -12.92154 -12.75622 -12.72751 -12.58124 -12.45776 -12.35280 -12.17794 -11.83095 -11.70879 -11.53204 -11.34309 -11.24138 -10.54571 -10.50399 -10.35349 -9.57139 -9.00028 -8.19879 -6.30574 -0.26372 0.32613 0.50775 0.86595 1.41927 1.44089 1.51963 1.82477 1.96440 2.19005 2.41869 2.75260 3.01305 3.14081 3.29154 3.62328 3.78123 3.83752 4.04162 4.07126 4.16469 4.22111 4.26161 4.32683 4.44453 4.49905 4.51897 4.64680 4.80893 4.86991 4.90052 4.92851 4.97052 5.13671 5.16915 5.18940 5.23862 5.33000 5.50471 5.51609 5.66480 5.70260 5.80537 5.84018 5.95826 6.22738 6.26824 6.41470 6.69074 6.86188 7.38694 8.91620 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.002105 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.857145 B =13299.879765 C =14415.385082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 H 0.076 0.924 4 C 0.051 3.949 5 N -0.529 5.529 6 C 0.510 3.490 7 O -0.510 6.510 8 C 0.509 3.491 9 O -0.529 6.529 10 N -0.679 5.679 11 C 0.128 3.872 12 C -0.107 4.107 13 C 0.026 3.974 14 C -0.543 4.543 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.045 3.955 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.093 4.093 26 C -0.132 4.132 27 C 0.088 3.912 28 O -0.317 6.317 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.420 0.580 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.066 0.934 39 H -0.003 1.003 40 H -0.002 1.002 41 H 0.263 0.737 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.166 0.834 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 -4.183 -30.042 30.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.016 3.984 3 H 0.094 0.906 4 C -0.070 4.070 5 N -0.254 5.254 6 C 0.295 3.705 7 O -0.386 6.386 8 C 0.289 3.711 9 O -0.408 6.408 10 N -0.330 5.330 11 C 0.005 3.995 12 C -0.145 4.145 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.082 0.918 16 C -0.199 4.199 17 N -0.572 5.572 18 Si 0.788 3.212 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.192 1.192 22 C -0.048 4.048 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.111 4.111 26 C -0.151 4.151 27 C 0.041 3.959 28 O -0.231 6.231 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.160 0.840 34 H 0.258 0.742 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.164 0.836 43 H 0.169 0.831 44 H 0.183 0.817 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.750 -4.287 -29.879 30.236 hybrid contribution 0.801 0.322 1.393 1.639 sum -0.949 -3.965 -28.486 28.777 Atomic orbital electron populations 1.21780 0.88377 1.04511 1.04809 1.23063 0.98177 0.94852 0.82275 0.90619 1.23650 0.76120 1.04548 1.02641 1.45502 1.08833 1.64689 1.06339 1.20254 0.86718 0.78083 0.85481 1.90636 1.14352 1.47955 1.85649 1.19797 0.86811 0.79071 0.85391 1.90625 1.15071 1.50186 1.84918 1.45880 1.14091 1.65477 1.07589 1.21551 0.96335 1.01875 0.79743 1.21650 0.97396 1.01459 0.93971 1.18923 0.95347 0.95467 0.91484 1.21647 0.96090 1.46254 0.94113 0.91838 1.25966 0.97381 0.95520 1.01037 1.70081 1.18415 1.50476 1.18240 0.85520 0.78890 0.79188 0.77567 1.19182 1.21102 1.19218 1.18273 0.94746 1.07893 0.83849 1.21788 0.92856 0.99195 1.01151 1.21386 1.01537 1.00850 0.91239 1.21406 0.92301 0.97456 0.99939 1.20810 0.95689 1.03653 0.94936 1.18847 0.83354 1.00975 0.92676 1.86018 1.20292 1.73857 1.42957 0.88406 0.89809 0.90766 0.89045 0.83969 0.74240 0.91395 0.91074 0.91404 0.91531 0.98495 0.98366 0.92787 0.83582 0.83135 0.81687 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.58 71.98 0.69 -0.90 16 2 C 0.07 1.28 3.58 30.78 0.11 1.39 16 3 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.05 1.08 5.19 86.41 0.45 1.52 16 5 N -0.53 -13.34 3.01 -629.41 -1.89 -15.24 16 6 C 0.51 13.93 7.64 87.23 0.67 14.60 16 7 O -0.51 -14.90 13.38 -3.36 -0.05 -14.95 16 8 C 0.51 14.27 7.73 87.23 0.67 14.95 16 9 O -0.53 -16.02 13.28 -3.30 -0.04 -16.06 16 10 N -0.68 -18.63 5.55 -464.53 -2.58 -21.20 16 11 C 0.13 4.06 5.67 86.38 0.49 4.55 16 12 C -0.11 -3.93 5.27 30.59 0.16 -3.77 16 13 C 0.03 1.27 4.97 29.85 0.15 1.42 16 14 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 16 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 17 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 18 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.05 1.12 6.32 38.13 0.24 1.37 16 23 C -0.13 -3.07 8.93 22.39 0.20 -2.87 16 24 C -0.13 -2.24 10.04 22.28 0.22 -2.02 16 25 C -0.09 -1.27 10.03 22.28 0.22 -1.05 16 26 C -0.13 -2.18 9.97 22.37 0.22 -1.95 16 27 C 0.09 1.93 6.51 22.61 0.15 2.07 16 28 O -0.32 -6.54 9.97 -92.25 -0.92 -7.46 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.14 3.13 5.00 -4.98 -0.02 3.11 16 34 H 0.42 10.34 7.96 -92.71 -0.74 9.61 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.15 3.86 5.20 -3.49 -0.02 3.84 16 43 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 44 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 45 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -67.61 373.29 2.44 -65.18 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.26 Total: 19.56 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 5.34 Total: 0.20 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -4.18 Total: -91.86 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.01 Total: -38.47 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -67.61 2.44 -65.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264780133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.501 kcal (2) G-P(sol) polarization free energy of solvation -67.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds