Wall clock time and date at job start Tue Mar 31 2020 17:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.64270 * 2 1 4 4 C 1.55273 * 110.90693 * 123.15633 * 2 1 3 5 5 C 1.54917 * 101.52493 * 153.84495 * 4 2 1 6 6 N 1.47418 * 104.92905 * 323.12257 * 5 4 2 7 7 C 1.34780 * 125.65037 * 204.09223 * 6 5 4 8 8 O 1.21359 * 120.00187 * 179.97438 * 7 6 5 9 9 C 1.49355 * 119.99856 * 359.97438 * 7 6 5 10 10 O 1.21379 * 119.99517 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99993 * 179.97438 * 9 7 6 12 12 C 1.39725 * 120.00056 * 174.79106 * 11 9 7 13 13 C 1.39021 * 120.04026 * 146.36301 * 12 11 9 14 14 C 1.38136 * 120.06178 * 179.97438 * 13 12 11 15 15 C 1.38185 * 120.14639 * 0.02562 * 14 13 12 16 16 C 1.38925 * 120.07840 * 0.02562 * 15 14 13 17 17 O 1.35755 * 120.02767 * 180.02562 * 16 15 14 18 18 C 1.34822 * 117.00029 * 5.91799 * 17 16 15 19 19 H 1.08003 * 120.00778 * 5.40393 * 18 17 16 20 20 C 1.38660 * 120.00001 * 185.40720 * 18 17 16 21 21 N 1.31561 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00095 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47247 * 89.99743 * 22 20 18 24 24 H 1.48495 * 109.47151 * 209.99619 * 22 20 18 25 25 H 1.48500 * 109.47255 * 329.99981 * 22 20 18 26 26 C 1.38761 * 119.93977 * 359.70581 * 16 15 14 27 27 C 1.47024 * 108.70395 * 24.07575 * 6 5 4 28 28 H 1.08998 * 109.88221 * 118.50841 * 27 6 5 29 29 C 1.52992 * 109.88126 * 239.52011 * 27 6 5 30 30 H 1.08999 * 109.47314 * 183.13674 * 1 2 3 31 31 H 1.09000 * 109.46601 * 303.13607 * 1 2 3 32 32 H 1.08993 * 109.47075 * 63.13399 * 1 2 3 33 33 H 1.08995 * 110.96115 * 35.82154 * 4 2 1 34 34 H 1.09003 * 111.10072 * 271.92584 * 4 2 1 35 35 H 1.08998 * 110.36781 * 204.22834 * 5 4 2 36 36 H 1.09000 * 110.36591 * 82.02168 * 5 4 2 37 37 H 0.97000 * 119.99911 * 354.79826 * 11 9 7 38 38 H 1.07999 * 119.97238 * 0.02562 * 13 12 11 39 39 H 1.08002 * 119.93200 * 180.02562 * 14 13 12 40 40 H 1.07996 * 119.96137 * 180.02562 * 15 14 13 41 41 H 0.97001 * 120.00038 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.07510 * 180.29155 * 26 16 15 43 43 H 1.08998 * 109.47434 * 58.54751 * 29 27 6 44 44 H 1.09000 * 109.47079 * 178.54345 * 29 27 6 45 45 H 1.09000 * 109.47766 * 298.54473 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0841 -0.7933 1.2143 5 6 3.4674 -1.2457 0.6834 6 7 3.2470 -1.5462 -0.7429 7 6 3.9949 -2.3776 -1.4952 8 8 3.7197 -2.5509 -2.6644 9 6 5.1624 -3.0855 -0.8900 10 8 5.4379 -2.9118 0.2793 11 7 5.9100 -3.9173 -1.6421 12 6 7.0646 -4.4948 -1.1077 13 6 7.4442 -5.7757 -1.4924 14 6 8.5859 -6.3468 -0.9647 15 6 9.3539 -5.6479 -0.0530 16 6 8.9795 -4.3679 0.3364 17 8 9.7350 -3.6820 1.2318 18 6 10.8985 -4.2476 1.6113 19 1 11.2340 -5.1604 1.1415 20 6 11.6646 -3.6573 2.6049 21 7 11.2564 -2.5452 3.1770 22 14 13.2771 -4.4405 3.1303 23 1 14.3836 -3.8993 2.3010 24 1 13.5341 -4.1329 4.5601 25 1 13.1955 -5.9119 2.9474 26 6 7.8363 -3.7887 -0.1957 27 6 2.0759 -0.7891 -1.2088 28 1 2.3705 -0.1010 -2.0011 29 6 1.0063 -1.7523 -1.7274 30 1 -0.3634 -1.0261 0.0562 31 1 -0.3632 0.5618 0.8606 32 1 -0.3633 0.4644 -0.9167 33 1 1.4523 -1.6523 1.4400 34 1 2.1922 -0.1496 2.0873 35 1 3.8031 -2.1381 1.2116 36 1 4.1970 -0.4434 0.7938 37 1 5.6465 -4.1149 -2.5545 38 1 6.8464 -6.3244 -2.2050 39 1 8.8791 -7.3419 -1.2654 40 1 10.2461 -6.0971 0.3573 41 1 11.7925 -2.1320 3.8718 42 1 7.5459 -2.7920 0.1019 43 1 0.7222 -2.4420 -0.9327 44 1 0.1315 -1.1859 -2.0469 45 1 1.4031 -2.3152 -2.5723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267755572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:08 Heat of formation + Delta-G solvation = -56.972264 kcal Electronic energy + Delta-G solvation = -28187.506202 eV Core-core repulsion = 24171.319355 eV Total energy + Delta-G solvation = -4016.186847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.11226 -39.77412 -38.64382 -37.85706 -36.62412 -34.34426 -33.29338 -32.26994 -31.44986 -29.67418 -28.74436 -28.14582 -25.71066 -25.31818 -24.57279 -22.89816 -21.96797 -21.20533 -20.07973 -19.29573 -18.39044 -17.87584 -17.08650 -16.87168 -16.41975 -15.73637 -15.54660 -15.12100 -14.83332 -14.69286 -14.28795 -14.09461 -14.02789 -13.69880 -13.58281 -13.44941 -13.11699 -12.88453 -12.75940 -12.56875 -12.43287 -12.17834 -11.82233 -11.75294 -11.65695 -11.57227 -11.15001 -11.05932 -10.99369 -10.86725 -10.78837 -10.75166 -10.47146 -9.88188 -9.58045 -9.21598 -8.94485 -8.83596 -7.77357 -7.23342 -6.44568 -4.03724 1.27970 2.09450 2.26865 2.32565 3.12929 3.13746 3.18865 3.25854 3.42909 3.95882 4.09754 4.28608 4.39492 4.46835 4.55842 4.85643 5.01472 5.04995 5.09394 5.10667 5.26939 5.28250 5.36500 5.39733 5.52336 5.58518 5.66475 5.70773 5.74443 5.78980 5.84057 5.94023 5.96793 6.05690 6.13441 6.16865 6.29883 6.55293 6.72576 6.95673 7.02657 7.07700 7.30347 7.38229 7.42154 7.67385 7.76350 7.99749 8.09344 9.00369 9.70568 10.73215 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.002645 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.120677 B =10583.658642 C =11956.562074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.131 4.131 5 C 0.092 3.908 6 N -0.586 5.586 7 C 0.526 3.474 8 O -0.523 6.523 9 C 0.502 3.498 10 O -0.486 6.486 11 N -0.638 5.638 12 C 0.172 3.828 13 C -0.230 4.230 14 C -0.057 4.057 15 C -0.241 4.241 16 C 0.167 3.833 17 O -0.172 6.172 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.185 4.185 27 C 0.136 3.864 28 H 0.079 0.921 29 C -0.165 4.165 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.417 0.583 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.270 0.730 42 H 0.129 0.871 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.072 2.362 -7.157 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.105 0.895 4 C -0.169 4.169 5 C -0.030 4.030 6 N -0.321 5.321 7 C 0.309 3.691 8 O -0.400 6.400 9 C 0.283 3.717 10 O -0.359 6.359 11 N -0.284 5.284 12 C 0.079 3.921 13 C -0.251 4.251 14 C -0.076 4.076 15 C -0.261 4.261 16 C 0.113 3.887 17 O -0.075 6.075 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.207 4.207 27 C 0.033 3.967 28 H 0.097 0.903 29 C -0.223 4.223 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.254 0.746 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.146 0.854 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.942 2.777 -6.683 20.278 hybrid contribution 0.747 -0.504 -0.176 0.918 sum -18.195 2.273 -6.860 19.578 Atomic orbital electron populations 1.21849 0.93655 1.02475 1.01972 1.22298 0.96534 0.99282 0.93986 0.89518 1.22963 0.95880 1.00380 0.97639 1.22744 0.97195 1.03300 0.79769 1.48342 1.28516 1.42849 1.12346 1.19743 0.83400 0.80064 0.85849 1.90733 1.70302 1.63225 1.15724 1.20042 0.83928 0.81070 0.86688 1.90817 1.68780 1.61051 1.15233 1.43026 1.23618 1.44790 1.17006 1.17152 0.85655 0.92103 0.97173 1.20292 1.01770 0.94389 1.08637 1.20524 0.93552 0.98291 0.95235 1.21220 1.04053 0.96237 1.04559 1.19083 0.90139 0.90111 0.89411 1.84002 1.30168 1.43035 1.50332 1.21342 0.94494 1.10330 1.20631 0.88975 1.25309 0.99639 0.96122 0.95457 1.70052 1.38046 1.17108 1.24237 0.85703 0.80258 0.79183 0.78230 1.19871 1.20260 1.19167 1.19987 0.95887 1.01450 1.03341 1.21710 0.85153 0.92994 0.96801 0.90280 1.22227 0.98233 0.99742 1.02056 0.91854 0.92211 0.92209 0.90442 0.89416 0.87719 0.90468 0.74583 0.87086 0.86811 0.85293 0.91990 0.85358 0.92274 0.91143 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.00 37.16 0.30 -0.49 16 2 C -0.10 -0.73 3.46 -88.72 -0.31 -1.04 16 3 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -1.03 6.55 -24.51 -0.16 -1.19 16 5 C 0.09 1.03 6.06 -2.53 -0.02 1.02 16 6 N -0.59 -7.17 3.08 -163.56 -0.50 -7.67 16 7 C 0.53 7.65 7.69 -11.63 -0.09 7.56 16 8 O -0.52 -8.06 15.38 5.49 0.08 -7.98 16 9 C 0.50 8.24 7.59 -11.63 -0.09 8.15 16 10 O -0.49 -9.18 11.49 5.47 0.06 -9.12 16 11 N -0.64 -10.16 5.32 -10.31 -0.05 -10.22 16 12 C 0.17 3.25 6.26 -83.77 -0.52 2.72 16 13 C -0.23 -3.97 9.96 -39.33 -0.39 -4.36 16 14 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 15 C -0.24 -5.23 9.13 -39.35 -0.36 -5.59 16 16 C 0.17 4.14 6.64 -39.13 -0.26 3.88 16 17 O -0.17 -5.01 9.75 0.06 0.00 -5.01 16 18 C -0.39 -10.98 9.44 30.89 0.29 -10.69 16 19 H 0.09 2.37 5.29 -52.48 -0.28 2.09 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 22 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.19 -4.19 8.59 -39.19 -0.34 -4.53 16 27 C 0.14 1.30 3.44 -66.95 -0.23 1.07 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 C -0.16 -1.46 7.93 37.15 0.29 -1.17 16 30 H 0.06 0.36 6.62 -51.93 -0.34 0.02 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.30 7.60 -51.93 -0.39 -0.10 16 33 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.38 6.16 -51.93 -0.32 1.06 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.42 5.53 8.30 -40.82 -0.34 5.19 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.13 3.05 6.45 -52.49 -0.34 2.71 16 43 H 0.06 0.52 7.54 -51.93 -0.39 0.13 16 44 H 0.07 0.48 6.70 -51.93 -0.35 0.13 16 45 H 0.07 0.77 6.74 -51.93 -0.35 0.42 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -32.70 366.12 -7.45 -40.15 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.91 Total: 8.56 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.37 Total: -5.09 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.20 Total: -42.51 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.15 Total: -22.10 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.70 -7.45 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267755572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.824 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds