Wall clock time and date at job start Tue Mar 31 2020 17:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.64270 * 2 1 4 4 C 1.55273 * 110.90693 * 123.15633 * 2 1 3 5 5 C 1.54917 * 101.52493 * 153.84495 * 4 2 1 6 6 N 1.47418 * 104.92905 * 323.12257 * 5 4 2 7 7 C 1.34780 * 125.65037 * 204.09223 * 6 5 4 8 8 O 1.21359 * 120.00187 * 179.97438 * 7 6 5 9 9 C 1.49355 * 119.99856 * 359.97438 * 7 6 5 10 10 O 1.21379 * 119.99517 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99993 * 179.97438 * 9 7 6 12 12 C 1.39725 * 120.00056 * 174.79106 * 11 9 7 13 13 C 1.39021 * 120.04026 * 146.36301 * 12 11 9 14 14 C 1.38136 * 120.06178 * 179.97438 * 13 12 11 15 15 C 1.38185 * 120.14639 * 0.02562 * 14 13 12 16 16 C 1.38925 * 120.07840 * 0.02562 * 15 14 13 17 17 O 1.35755 * 120.02767 * 180.02562 * 16 15 14 18 18 C 1.34822 * 117.00029 * 5.91799 * 17 16 15 19 19 H 1.08003 * 120.00778 * 5.40393 * 18 17 16 20 20 C 1.38660 * 120.00001 * 185.40720 * 18 17 16 21 21 N 1.31561 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00095 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47247 * 89.99743 * 22 20 18 24 24 H 1.48495 * 109.47151 * 209.99619 * 22 20 18 25 25 H 1.48500 * 109.47255 * 329.99981 * 22 20 18 26 26 C 1.38761 * 119.93977 * 359.70581 * 16 15 14 27 27 C 1.47024 * 108.70395 * 24.07575 * 6 5 4 28 28 H 1.08998 * 109.88221 * 118.50841 * 27 6 5 29 29 C 1.52992 * 109.88126 * 239.52011 * 27 6 5 30 30 H 1.08999 * 109.47314 * 183.13674 * 1 2 3 31 31 H 1.09000 * 109.46601 * 303.13607 * 1 2 3 32 32 H 1.08993 * 109.47075 * 63.13399 * 1 2 3 33 33 H 1.08995 * 110.96115 * 35.82154 * 4 2 1 34 34 H 1.09003 * 111.10072 * 271.92584 * 4 2 1 35 35 H 1.08998 * 110.36781 * 204.22834 * 5 4 2 36 36 H 1.09000 * 110.36591 * 82.02168 * 5 4 2 37 37 H 0.97000 * 119.99911 * 354.79826 * 11 9 7 38 38 H 1.07999 * 119.97238 * 0.02562 * 13 12 11 39 39 H 1.08002 * 119.93200 * 180.02562 * 14 13 12 40 40 H 1.07996 * 119.96137 * 180.02562 * 15 14 13 41 41 H 0.97001 * 120.00038 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.07510 * 180.29155 * 26 16 15 43 43 H 1.08998 * 109.47434 * 58.54751 * 29 27 6 44 44 H 1.09000 * 109.47079 * 178.54345 * 29 27 6 45 45 H 1.09000 * 109.47766 * 298.54473 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0841 -0.7933 1.2143 5 6 3.4674 -1.2457 0.6834 6 7 3.2470 -1.5462 -0.7429 7 6 3.9949 -2.3776 -1.4952 8 8 3.7197 -2.5509 -2.6644 9 6 5.1624 -3.0855 -0.8900 10 8 5.4379 -2.9118 0.2793 11 7 5.9100 -3.9173 -1.6421 12 6 7.0646 -4.4948 -1.1077 13 6 7.4442 -5.7757 -1.4924 14 6 8.5859 -6.3468 -0.9647 15 6 9.3539 -5.6479 -0.0530 16 6 8.9795 -4.3679 0.3364 17 8 9.7350 -3.6820 1.2318 18 6 10.8985 -4.2476 1.6113 19 1 11.2340 -5.1604 1.1415 20 6 11.6646 -3.6573 2.6049 21 7 11.2564 -2.5452 3.1770 22 14 13.2771 -4.4405 3.1303 23 1 14.3836 -3.8993 2.3010 24 1 13.5341 -4.1329 4.5601 25 1 13.1955 -5.9119 2.9474 26 6 7.8363 -3.7887 -0.1957 27 6 2.0759 -0.7891 -1.2088 28 1 2.3705 -0.1010 -2.0011 29 6 1.0063 -1.7523 -1.7274 30 1 -0.3634 -1.0261 0.0562 31 1 -0.3632 0.5618 0.8606 32 1 -0.3633 0.4644 -0.9167 33 1 1.4523 -1.6523 1.4400 34 1 2.1922 -0.1496 2.0873 35 1 3.8031 -2.1381 1.2116 36 1 4.1970 -0.4434 0.7938 37 1 5.6465 -4.1149 -2.5545 38 1 6.8464 -6.3244 -2.2050 39 1 8.8791 -7.3419 -1.2654 40 1 10.2461 -6.0971 0.3573 41 1 11.7925 -2.1320 3.8718 42 1 7.5459 -2.7920 0.1019 43 1 0.7222 -2.4420 -0.9327 44 1 0.1315 -1.1859 -2.0469 45 1 1.4031 -2.3152 -2.5723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267755572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:07 Heat of formation + Delta-G solvation = -78.901669 kcal Electronic energy + Delta-G solvation = -28188.457133 eV Core-core repulsion = 24171.319355 eV Total energy + Delta-G solvation = -4017.137778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.33216 -41.08989 -40.20127 -38.97996 -38.30258 -35.79217 -34.29838 -34.18020 -32.23371 -31.33250 -30.31797 -28.97075 -27.39142 -26.56418 -25.60672 -24.02919 -23.43113 -22.72749 -21.26908 -20.24783 -19.95605 -19.30304 -18.72636 -18.07890 -17.48723 -17.07312 -16.82991 -16.78786 -16.19762 -16.07361 -15.80853 -15.52630 -15.36502 -15.02410 -14.71673 -14.44325 -14.35126 -14.23694 -13.84955 -13.64971 -13.55306 -13.26801 -13.13686 -13.05972 -12.87895 -12.69926 -12.64123 -12.39961 -12.32591 -12.12565 -11.79938 -11.54944 -11.45819 -11.41014 -11.32581 -10.77913 -10.62307 -9.96752 -9.42403 -8.95145 -8.46946 -6.16269 -0.07821 0.59683 0.67892 1.05975 1.35813 1.45637 1.54060 1.95970 2.15946 2.28958 2.79851 3.03756 3.15344 3.47863 3.53284 3.54321 3.84639 4.08327 4.12052 4.25005 4.32002 4.32959 4.36283 4.51510 4.56516 4.57297 4.66650 4.74943 4.76946 4.86106 4.90636 4.94412 5.06801 5.09757 5.10416 5.10708 5.25478 5.27689 5.32628 5.33276 5.50761 5.59079 5.69379 5.90894 6.01600 6.07462 6.12636 6.54170 6.78156 6.96883 7.77488 8.76580 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.002645 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.120677 B =10583.658642 C =11956.562074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.095 0.905 4 C -0.121 4.121 5 C 0.086 3.914 6 N -0.582 5.582 7 C 0.528 3.472 8 O -0.534 6.534 9 C 0.498 3.502 10 O -0.515 6.515 11 N -0.628 5.628 12 C 0.177 3.823 13 C -0.201 4.201 14 C -0.046 4.046 15 C -0.248 4.248 16 C 0.130 3.870 17 O -0.231 6.231 18 C -0.413 4.413 19 H 0.107 0.893 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.022 2.978 23 H -0.263 1.263 24 H -0.273 1.273 25 H -0.249 1.249 26 C -0.207 4.207 27 C 0.126 3.874 28 H 0.078 0.922 29 C -0.158 4.158 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.433 0.567 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.127 0.873 41 H 0.272 0.728 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.841 0.528 -8.882 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.114 0.886 4 C -0.159 4.159 5 C -0.036 4.036 6 N -0.315 5.315 7 C 0.310 3.690 8 O -0.412 6.412 9 C 0.280 3.720 10 O -0.390 6.390 11 N -0.276 5.276 12 C 0.084 3.916 13 C -0.221 4.221 14 C -0.064 4.064 15 C -0.268 4.268 16 C 0.079 3.921 17 O -0.138 6.138 18 C -0.489 4.489 19 H 0.124 0.876 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.841 3.159 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.172 1.172 26 C -0.228 4.228 27 C 0.025 3.975 28 H 0.096 0.904 29 C -0.215 4.215 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.273 0.727 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.782 0.928 -8.471 22.461 hybrid contribution 1.023 0.010 0.143 1.033 sum -19.759 0.938 -8.328 21.463 Atomic orbital electron populations 1.21842 0.91814 1.02872 1.03085 1.22315 0.97867 0.99026 0.91950 0.88629 1.22958 0.93457 1.00988 0.98482 1.22790 0.99430 1.02053 0.79337 1.48509 1.28579 1.41808 1.12594 1.19319 0.83153 0.80703 0.85810 1.90725 1.70541 1.64040 1.15859 1.20560 0.84375 0.80658 0.86370 1.90827 1.69666 1.61793 1.16713 1.42961 1.22520 1.44495 1.17659 1.17281 0.85792 0.92661 0.95896 1.20896 1.01017 0.92965 1.07220 1.21046 0.92524 0.99776 0.93044 1.21385 1.04677 0.95257 1.05475 1.19587 0.90935 0.91801 0.89814 1.83965 1.31518 1.45266 1.53004 1.21894 0.94968 1.10907 1.21156 0.87575 1.26678 1.03827 0.96587 0.95151 1.70214 1.40394 1.19545 1.25863 0.84543 0.74693 0.78906 0.77782 1.18781 1.19759 1.17243 1.19988 0.96569 1.01076 1.05182 1.22034 0.84328 0.93131 0.98026 0.90404 1.22181 0.98653 0.99603 1.01106 0.91817 0.91044 0.91199 0.89906 0.87716 0.90079 0.91207 0.72678 0.82099 0.81963 0.85521 0.91853 0.88049 0.92197 0.88566 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.00 71.98 0.58 -0.53 16 2 C -0.09 -1.13 3.46 -9.56 -0.03 -1.16 16 3 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.12 -1.75 6.55 32.03 0.21 -1.54 16 5 C 0.09 1.98 6.06 86.86 0.53 2.51 16 6 N -0.58 -14.22 3.08 -789.72 -2.43 -16.65 16 7 C 0.53 15.40 7.69 87.24 0.67 16.07 16 8 O -0.53 -16.14 15.38 -3.27 -0.05 -16.19 16 9 C 0.50 16.72 7.59 87.24 0.66 17.38 16 10 O -0.52 -20.62 11.49 -3.34 -0.04 -20.66 16 11 N -0.63 -19.49 5.32 -304.89 -1.62 -21.11 16 12 C 0.18 6.55 6.26 38.20 0.24 6.79 16 13 C -0.20 -6.13 9.96 22.43 0.22 -5.91 16 14 C -0.05 -1.48 10.03 22.23 0.22 -1.26 16 15 C -0.25 -10.71 9.13 22.42 0.20 -10.51 16 16 C 0.13 6.76 6.64 22.56 0.15 6.91 16 17 O -0.23 -14.45 9.75 -22.71 -0.22 -14.67 16 18 C -0.41 -24.40 9.44 67.92 0.64 -23.76 16 19 H 0.11 5.64 5.29 -2.91 -0.02 5.63 16 20 C -0.03 -1.45 5.49 84.83 0.47 -0.98 16 21 N -0.92 -57.90 13.67 21.62 0.30 -57.60 16 22 Si 1.02 43.12 29.55 68.60 2.03 45.15 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 26 C -0.21 -9.79 8.59 22.52 0.19 -9.60 16 27 C 0.13 2.25 3.44 45.34 0.16 2.41 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 C -0.16 -2.53 7.93 71.98 0.57 -1.95 16 30 H 0.06 0.53 6.62 -2.39 -0.02 0.51 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.45 7.60 -2.39 -0.02 0.43 16 33 H 0.08 1.14 8.03 -2.39 -0.02 1.12 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 2.28 6.16 -2.39 -0.01 2.27 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.43 10.58 8.30 -92.71 -0.77 9.81 16 38 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 40 H 0.13 5.45 5.71 -2.91 -0.02 5.43 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.10 5.26 6.45 -2.91 -0.02 5.24 16 43 H 0.06 0.95 7.54 -2.39 -0.02 0.93 16 44 H 0.10 1.04 6.70 -2.39 -0.02 1.02 16 45 H 0.05 0.99 6.74 -2.39 -0.02 0.98 16 Total: -1.00 -78.77 366.12 3.90 -74.87 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.27 Total: 32.01 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.68 Total: -5.15 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -3.76 Total: -95.37 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.31 Total: -51.51 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -78.77 3.90 -74.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267755572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.036 kcal (2) G-P(sol) polarization free energy of solvation -78.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds