Wall clock time and date at job start Tue Mar 31 2020 17:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 110.64459 * 2 1 4 4 C 1.55155 * 110.72065 * 236.65495 * 2 1 3 5 5 C 1.55123 * 101.48815 * 205.97371 * 4 2 1 6 6 N 1.47422 * 104.72445 * 37.29812 * 5 4 2 7 7 C 1.34773 * 125.65246 * 155.81777 * 6 5 4 8 8 O 1.21358 * 120.00401 * 179.69814 * 7 6 5 9 9 C 1.49355 * 119.99598 * 359.69247 * 7 6 5 10 10 O 1.21375 * 120.00578 * 359.97438 * 9 7 6 11 11 N 1.34778 * 120.00059 * 180.02562 * 9 7 6 12 12 C 1.39721 * 120.00597 * 175.27612 * 11 9 7 13 13 C 1.39023 * 120.03911 * 35.80444 * 12 11 9 14 14 C 1.38143 * 120.05987 * 180.02562 * 13 12 11 15 15 C 1.38176 * 120.14540 * 359.97438 * 14 13 12 16 16 C 1.38925 * 120.08323 * 359.78532 * 15 14 13 17 17 O 1.35750 * 120.03514 * 180.25685 * 16 15 14 18 18 C 1.34822 * 117.00242 * 186.04878 * 17 16 15 19 19 H 1.07999 * 120.00289 * 5.26866 * 18 17 16 20 20 C 1.38655 * 120.00409 * 185.26977 * 18 17 16 21 21 N 1.31564 * 119.99513 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00520 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46883 * 60.00137 * 22 20 18 24 24 H 1.48503 * 109.47507 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47195 * 300.00036 * 22 20 18 26 26 C 1.38761 * 119.93299 * 0.46631 * 16 15 14 27 27 C 1.47028 * 108.70020 * 335.55375 * 6 5 4 28 28 H 1.08993 * 109.88316 * 241.71246 * 27 6 5 29 29 C 1.53003 * 109.87888 * 120.70135 * 27 6 5 30 30 H 1.08999 * 109.47347 * 296.86662 * 1 2 3 31 31 H 1.09003 * 109.46685 * 56.85987 * 1 2 3 32 32 H 1.09000 * 109.47636 * 176.85783 * 1 2 3 33 33 H 1.09001 * 111.00577 * 324.22061 * 4 2 1 34 34 H 1.09003 * 110.99807 * 88.02847 * 4 2 1 35 35 H 1.09004 * 110.49874 * 278.45492 * 5 4 2 36 36 H 1.08998 * 110.34210 * 156.06519 * 5 4 2 37 37 H 0.97006 * 119.99499 * 355.26426 * 11 9 7 38 38 H 1.08002 * 119.97110 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.92726 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.96062 * 180.02562 * 15 14 13 41 41 H 0.97003 * 119.99754 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.06861 * 179.79624 * 26 16 15 43 43 H 1.08999 * 109.47041 * 61.45722 * 29 27 6 44 44 H 1.09001 * 109.46638 * 181.45401 * 29 27 6 45 45 H 1.08997 * 109.47242 * 301.45295 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0789 -0.7977 -1.2123 5 6 3.4665 -1.2469 -0.6838 6 7 3.2444 -1.5496 0.7418 7 6 3.9921 -2.3811 1.4941 8 8 3.7190 -2.5517 2.6642 9 6 5.1568 -3.0927 0.8876 10 8 5.4296 -2.9226 -0.2828 11 7 5.9042 -3.9247 1.6397 12 6 6.9320 -4.6657 1.0507 13 6 7.6856 -4.1141 0.0208 14 6 8.7015 -4.8465 -0.5621 15 6 8.9723 -6.1286 -0.1237 16 6 8.2263 -6.6838 0.9083 17 8 8.4967 -7.9415 1.3418 18 6 7.6581 -8.4669 2.2574 19 1 6.7701 -7.9261 2.5497 20 6 7.9355 -9.7017 2.8239 21 7 9.0174 -10.3604 2.4683 22 14 6.7740 -10.4293 4.0931 23 1 5.4288 -10.6058 3.4893 24 1 7.2927 -11.7467 4.5412 25 1 6.6774 -9.5137 5.2582 26 6 7.2017 -5.9531 1.4928 27 6 2.0759 -0.7891 1.2087 28 1 2.3734 -0.1009 1.9998 29 6 1.0047 -1.7492 1.7301 30 1 -0.3634 0.4644 0.9167 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3634 -1.0261 -0.0563 33 1 1.4451 -1.6561 -1.4346 34 1 2.1844 -0.1557 -2.0869 35 1 4.1947 -0.4431 -0.7920 36 1 3.8030 -2.1384 -1.2130 37 1 5.7288 -4.0089 2.5900 38 1 7.4766 -3.1121 -0.3238 39 1 9.2853 -4.4161 -1.3623 40 1 9.7675 -6.6984 -0.5814 41 1 9.2114 -11.2244 2.8643 42 1 6.6182 -6.3838 2.2931 43 1 1.4016 -2.3121 2.5749 44 1 0.1318 -1.1804 2.0503 45 1 0.7178 -2.4390 0.9365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267755573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:13 Heat of formation + Delta-G solvation = -57.325545 kcal Electronic energy + Delta-G solvation = -28139.139394 eV Core-core repulsion = 24122.937228 eV Total energy + Delta-G solvation = -4016.202167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.16997 -39.82777 -38.69397 -37.92258 -36.54011 -34.49488 -33.37808 -32.26216 -31.50648 -29.56496 -28.81257 -28.21016 -25.77803 -25.33925 -24.65095 -22.94495 -21.89053 -21.36106 -20.05101 -19.37885 -18.30753 -18.01933 -17.19551 -16.90642 -16.46923 -15.78762 -15.58969 -15.11242 -14.92821 -14.70433 -14.32513 -14.14348 -14.07956 -13.75493 -13.61617 -13.45795 -13.18673 -13.03598 -12.83954 -12.51776 -12.40478 -12.24617 -11.86291 -11.79217 -11.73785 -11.58634 -11.15984 -11.06349 -11.02024 -10.88863 -10.83152 -10.79105 -10.46822 -9.90507 -9.56810 -9.35723 -9.01444 -8.82446 -7.83881 -7.23745 -6.46935 -4.06816 1.23025 2.02868 2.21283 2.36943 3.12991 3.13144 3.16434 3.19276 3.40020 3.95309 4.03029 4.19896 4.34893 4.40147 4.54282 4.78968 4.93937 4.97728 5.03288 5.08066 5.22560 5.23232 5.29775 5.32949 5.46067 5.54991 5.61697 5.64510 5.67548 5.76806 5.86668 5.89200 5.94408 5.99432 6.11491 6.15381 6.20143 6.54637 6.77938 6.87847 7.01066 7.07516 7.23217 7.35929 7.40548 7.67170 7.73363 7.96415 8.03570 8.98338 9.66904 10.70707 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.002681 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.464198 B =10442.104470 C =11760.009462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.086 0.914 4 C -0.131 4.131 5 C 0.094 3.906 6 N -0.588 5.588 7 C 0.525 3.475 8 O -0.518 6.518 9 C 0.506 3.494 10 O -0.499 6.499 11 N -0.636 5.636 12 C 0.171 3.829 13 C -0.203 4.203 14 C -0.065 4.065 15 C -0.194 4.194 16 C 0.166 3.834 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.090 0.910 20 C 0.041 3.959 21 N -0.861 5.861 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.249 4.249 27 C 0.136 3.864 28 H 0.079 0.921 29 C -0.166 4.166 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.418 0.582 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.271 0.729 42 H 0.132 0.868 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.790 20.351 -4.846 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.169 4.169 5 C -0.028 4.028 6 N -0.323 5.323 7 C 0.307 3.693 8 O -0.394 6.394 9 C 0.288 3.712 10 O -0.374 6.374 11 N -0.281 5.281 12 C 0.078 3.922 13 C -0.223 4.223 14 C -0.084 4.084 15 C -0.214 4.214 16 C 0.112 3.888 17 O -0.077 6.077 18 C -0.470 4.470 19 H 0.108 0.892 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.270 4.270 27 C 0.034 3.966 28 H 0.097 0.903 29 C -0.224 4.224 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.255 0.745 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.438 19.933 -4.982 25.111 hybrid contribution -0.687 -0.382 1.197 1.432 sum -15.125 19.550 -3.785 25.006 Atomic orbital electron populations 1.21862 0.93632 1.02571 1.01984 1.22273 0.96622 0.99132 0.94008 0.89566 1.22986 0.95946 1.00401 0.97598 1.22753 0.97054 1.02970 0.80026 1.48332 1.28789 1.42852 1.12293 1.19763 0.83561 0.80012 0.85916 1.90760 1.70230 1.62754 1.15674 1.19986 0.83618 0.80967 0.86630 1.90715 1.69087 1.61788 1.15763 1.43110 1.31314 1.40759 1.12952 1.17408 0.88413 0.90286 0.96081 1.20650 0.99085 1.01295 1.01298 1.20543 0.96225 0.93318 0.98272 1.20300 1.04055 0.96743 1.00291 1.19074 0.91994 0.85616 0.92130 1.84017 1.48970 1.22022 1.52652 1.21239 1.03638 1.02782 1.19313 0.89236 1.25278 0.97299 0.95709 0.98090 1.70030 1.24358 1.14013 1.41177 0.85798 0.79415 0.78491 0.79857 1.19486 1.20236 1.19454 1.20867 1.05109 0.93506 1.07556 1.21713 0.85252 0.92943 0.96729 0.90306 1.22240 0.98221 0.99769 1.02169 0.92173 0.92234 0.91782 0.90332 0.89575 0.90765 0.87762 0.74456 0.85870 0.86438 0.86230 0.91916 0.85024 0.91077 0.91114 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 7.99 37.16 0.30 -0.41 16 2 C -0.10 -0.63 3.47 -88.78 -0.31 -0.94 16 3 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -0.86 6.54 -24.47 -0.16 -1.02 16 5 C 0.09 0.89 6.08 -2.41 -0.01 0.87 16 6 N -0.59 -6.63 3.08 -163.42 -0.50 -7.14 16 7 C 0.52 7.37 7.69 -11.63 -0.09 7.29 16 8 O -0.52 -8.11 15.38 5.49 0.08 -8.03 16 9 C 0.51 7.87 7.69 -11.63 -0.09 7.78 16 10 O -0.50 -8.20 11.24 5.48 0.06 -8.14 16 11 N -0.64 -10.40 5.31 -10.31 -0.05 -10.45 16 12 C 0.17 3.27 6.28 -83.78 -0.53 2.74 16 13 C -0.20 -3.76 8.69 -39.33 -0.34 -4.10 16 14 C -0.06 -1.18 10.03 -39.64 -0.40 -1.58 16 15 C -0.19 -4.07 9.99 -39.35 -0.39 -4.47 16 16 C 0.17 3.99 6.64 -39.13 -0.26 3.73 16 17 O -0.17 -4.89 9.76 0.07 0.00 -4.89 16 18 C -0.39 -10.90 9.44 30.89 0.29 -10.61 16 19 H 0.09 2.30 5.29 -52.49 -0.28 2.02 16 20 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 21 N -0.86 -25.07 13.67 55.48 0.76 -24.32 16 22 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 C -0.25 -5.40 9.05 -39.19 -0.35 -5.76 16 27 C 0.14 1.22 3.43 -66.95 -0.23 0.99 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 C -0.17 -1.48 7.93 37.16 0.29 -1.19 16 30 H 0.06 0.27 7.59 -51.93 -0.39 -0.12 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.34 6.61 -51.93 -0.34 0.00 16 33 H 0.08 0.54 8.02 -51.93 -0.42 0.12 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.17 6.14 -51.93 -0.32 0.85 16 37 H 0.42 6.19 8.30 -40.82 -0.34 5.85 16 38 H 0.12 2.18 6.27 -52.49 -0.33 1.85 16 39 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 41 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 42 H 0.13 2.84 5.71 -52.48 -0.30 2.54 16 43 H 0.07 0.81 6.74 -51.93 -0.35 0.46 16 44 H 0.07 0.48 6.70 -51.93 -0.35 0.13 16 45 H 0.06 0.54 7.53 -51.93 -0.39 0.14 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -31.85 365.81 -7.44 -39.30 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.90 Total: 8.35 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -2.38 Total: -5.65 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.20 Total: -41.91 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.15 Total: -21.06 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.85 -7.44 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267755573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.030 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds