Wall clock time and date at job start Tue Mar 31 2020 17:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 110.64459 * 2 1 4 4 C 1.55155 * 110.72065 * 236.65495 * 2 1 3 5 5 C 1.55123 * 101.48815 * 205.97371 * 4 2 1 6 6 N 1.47422 * 104.72445 * 37.29812 * 5 4 2 7 7 C 1.34773 * 125.65246 * 155.81777 * 6 5 4 8 8 O 1.21358 * 120.00401 * 179.69814 * 7 6 5 9 9 C 1.49355 * 119.99598 * 359.69247 * 7 6 5 10 10 O 1.21375 * 120.00578 * 359.97438 * 9 7 6 11 11 N 1.34778 * 120.00059 * 180.02562 * 9 7 6 12 12 C 1.39721 * 120.00597 * 175.27612 * 11 9 7 13 13 C 1.39023 * 120.03911 * 35.80444 * 12 11 9 14 14 C 1.38143 * 120.05987 * 180.02562 * 13 12 11 15 15 C 1.38176 * 120.14540 * 359.97438 * 14 13 12 16 16 C 1.38925 * 120.08323 * 359.78532 * 15 14 13 17 17 O 1.35750 * 120.03514 * 180.25685 * 16 15 14 18 18 C 1.34822 * 117.00242 * 186.04878 * 17 16 15 19 19 H 1.07999 * 120.00289 * 5.26866 * 18 17 16 20 20 C 1.38655 * 120.00409 * 185.26977 * 18 17 16 21 21 N 1.31564 * 119.99513 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00520 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46883 * 60.00137 * 22 20 18 24 24 H 1.48503 * 109.47507 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47195 * 300.00036 * 22 20 18 26 26 C 1.38761 * 119.93299 * 0.46631 * 16 15 14 27 27 C 1.47028 * 108.70020 * 335.55375 * 6 5 4 28 28 H 1.08993 * 109.88316 * 241.71246 * 27 6 5 29 29 C 1.53003 * 109.87888 * 120.70135 * 27 6 5 30 30 H 1.08999 * 109.47347 * 296.86662 * 1 2 3 31 31 H 1.09003 * 109.46685 * 56.85987 * 1 2 3 32 32 H 1.09000 * 109.47636 * 176.85783 * 1 2 3 33 33 H 1.09001 * 111.00577 * 324.22061 * 4 2 1 34 34 H 1.09003 * 110.99807 * 88.02847 * 4 2 1 35 35 H 1.09004 * 110.49874 * 278.45492 * 5 4 2 36 36 H 1.08998 * 110.34210 * 156.06519 * 5 4 2 37 37 H 0.97006 * 119.99499 * 355.26426 * 11 9 7 38 38 H 1.08002 * 119.97110 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.92726 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.96062 * 180.02562 * 15 14 13 41 41 H 0.97003 * 119.99754 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.06861 * 179.79624 * 26 16 15 43 43 H 1.08999 * 109.47041 * 61.45722 * 29 27 6 44 44 H 1.09001 * 109.46638 * 181.45401 * 29 27 6 45 45 H 1.08997 * 109.47242 * 301.45295 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0789 -0.7977 -1.2123 5 6 3.4665 -1.2469 -0.6838 6 7 3.2444 -1.5496 0.7418 7 6 3.9921 -2.3811 1.4941 8 8 3.7190 -2.5517 2.6642 9 6 5.1568 -3.0927 0.8876 10 8 5.4296 -2.9226 -0.2828 11 7 5.9042 -3.9247 1.6397 12 6 6.9320 -4.6657 1.0507 13 6 7.6856 -4.1141 0.0208 14 6 8.7015 -4.8465 -0.5621 15 6 8.9723 -6.1286 -0.1237 16 6 8.2263 -6.6838 0.9083 17 8 8.4967 -7.9415 1.3418 18 6 7.6581 -8.4669 2.2574 19 1 6.7701 -7.9261 2.5497 20 6 7.9355 -9.7017 2.8239 21 7 9.0174 -10.3604 2.4683 22 14 6.7740 -10.4293 4.0931 23 1 5.4288 -10.6058 3.4893 24 1 7.2927 -11.7467 4.5412 25 1 6.6774 -9.5137 5.2582 26 6 7.2017 -5.9531 1.4928 27 6 2.0759 -0.7891 1.2087 28 1 2.3734 -0.1009 1.9998 29 6 1.0047 -1.7492 1.7301 30 1 -0.3634 0.4644 0.9167 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3634 -1.0261 -0.0563 33 1 1.4451 -1.6561 -1.4346 34 1 2.1844 -0.1557 -2.0869 35 1 4.1947 -0.4431 -0.7920 36 1 3.8030 -2.1384 -1.2130 37 1 5.7288 -4.0089 2.5900 38 1 7.4766 -3.1121 -0.3238 39 1 9.2853 -4.4161 -1.3623 40 1 9.7675 -6.6984 -0.5814 41 1 9.2114 -11.2244 2.8643 42 1 6.6182 -6.3838 2.2931 43 1 1.4016 -2.3121 2.5749 44 1 0.1318 -1.1804 2.0503 45 1 0.7178 -2.4390 0.9365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267755573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:12 Heat of formation + Delta-G solvation = -77.693842 kcal Electronic energy + Delta-G solvation = -28140.022630 eV Core-core repulsion = 24122.937228 eV Total energy + Delta-G solvation = -4017.085402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.31415 -41.09507 -40.19753 -38.97649 -38.19367 -35.90223 -34.27162 -34.18528 -32.19715 -31.15328 -30.43201 -28.97626 -27.40740 -26.55216 -25.58820 -23.89372 -23.55757 -22.63999 -21.29972 -20.17963 -19.83129 -19.47952 -18.72049 -18.03828 -17.49450 -17.07227 -16.89550 -16.66107 -16.21966 -16.07853 -15.85262 -15.50838 -15.31572 -14.99361 -14.70621 -14.56334 -14.31563 -14.18768 -13.82840 -13.63964 -13.56376 -13.29546 -13.14097 -13.00776 -12.85448 -12.73425 -12.51017 -12.40152 -12.31328 -12.15383 -11.77421 -11.54377 -11.50129 -11.41076 -11.32005 -10.78430 -10.58806 -9.93490 -9.45062 -8.96922 -8.48580 -6.17255 -0.05829 0.56125 0.68061 1.07437 1.34567 1.44598 1.49992 1.97240 2.16185 2.30139 2.79016 3.06673 3.15052 3.46095 3.51822 3.57435 3.86375 4.07400 4.14824 4.27204 4.28822 4.35045 4.38314 4.52463 4.57036 4.57132 4.59880 4.76879 4.80218 4.86435 4.93565 4.99249 5.07820 5.09983 5.10689 5.13246 5.25996 5.28621 5.31848 5.36027 5.51689 5.60251 5.63445 5.92363 5.98986 6.09514 6.16014 6.50857 6.75577 6.95797 7.73932 8.73798 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.002681 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.464198 B =10442.104470 C =11760.009462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.102 0.898 4 C -0.123 4.123 5 C 0.087 3.913 6 N -0.581 5.581 7 C 0.523 3.477 8 O -0.541 6.541 9 C 0.508 3.492 10 O -0.506 6.506 11 N -0.636 5.636 12 C 0.175 3.825 13 C -0.191 4.191 14 C -0.049 4.049 15 C -0.204 4.204 16 C 0.133 3.867 17 O -0.223 6.223 18 C -0.415 4.415 19 H 0.099 0.901 20 C -0.018 4.018 21 N -0.916 5.916 22 Si 1.015 2.985 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.257 1.257 26 C -0.256 4.256 27 C 0.127 3.873 28 H 0.078 0.922 29 C -0.161 4.161 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.425 0.575 38 H 0.141 0.859 39 H 0.161 0.839 40 H 0.124 0.876 41 H 0.274 0.726 42 H 0.125 0.875 43 H 0.041 0.959 44 H 0.094 0.906 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.986 23.398 -5.766 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.120 0.880 4 C -0.161 4.161 5 C -0.034 4.034 6 N -0.315 5.315 7 C 0.306 3.694 8 O -0.419 6.419 9 C 0.291 3.709 10 O -0.381 6.381 11 N -0.283 5.283 12 C 0.082 3.918 13 C -0.211 4.211 14 C -0.067 4.067 15 C -0.224 4.224 16 C 0.082 3.918 17 O -0.129 6.129 18 C -0.491 4.491 19 H 0.116 0.884 20 C -0.217 4.217 21 N -0.554 5.554 22 Si 0.834 3.166 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.182 1.182 26 C -0.277 4.277 27 C 0.025 3.975 28 H 0.096 0.904 29 C -0.219 4.219 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.263 0.737 38 H 0.159 0.841 39 H 0.179 0.821 40 H 0.142 0.858 41 H 0.083 0.917 42 H 0.143 0.857 43 H 0.060 0.940 44 H 0.112 0.888 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.671 23.062 -5.943 29.071 hybrid contribution -0.047 -0.999 1.288 1.631 sum -16.719 22.063 -4.655 28.071 Atomic orbital electron populations 1.21860 0.92390 1.02627 1.03019 1.22286 0.97487 0.99205 0.91983 0.88005 1.22990 0.93799 1.00797 0.98483 1.22908 0.99302 1.02457 0.78746 1.48511 1.28520 1.41461 1.12973 1.19433 0.83510 0.80689 0.85817 1.90756 1.70797 1.63881 1.16485 1.20323 0.83733 0.80441 0.86437 1.90703 1.69352 1.61988 1.16036 1.43097 1.30996 1.40744 1.13434 1.17443 0.88878 0.89543 0.95949 1.21009 0.98139 1.01824 1.00163 1.20984 0.95709 0.91735 0.98311 1.20573 1.04024 0.98015 0.99761 1.19609 0.93596 0.85186 0.93448 1.83979 1.50384 1.24273 1.54244 1.21705 1.04310 1.03526 1.19534 0.88398 1.26521 0.99141 0.95817 1.00178 1.70167 1.26888 1.14826 1.43490 0.84707 0.77126 0.77780 0.77009 1.18418 1.19449 1.18177 1.20864 1.04729 0.94533 1.07624 1.22014 0.84346 0.92881 0.98246 0.90352 1.22202 0.98962 0.99770 1.00960 0.91513 0.90842 0.92277 0.90542 0.87154 0.89823 0.89650 0.73704 0.84091 0.82102 0.85816 0.91731 0.85734 0.93962 0.88757 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 7.99 71.98 0.57 -0.33 16 2 C -0.09 -0.82 3.47 -9.61 -0.03 -0.85 16 3 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.12 -1.23 6.54 32.06 0.21 -1.02 16 5 C 0.09 1.46 6.08 86.93 0.53 1.99 16 6 N -0.58 -12.24 3.08 -789.29 -2.43 -14.67 16 7 C 0.52 14.32 7.69 87.24 0.67 14.99 16 8 O -0.54 -16.85 15.38 -3.27 -0.05 -16.90 16 9 C 0.51 15.28 7.69 87.24 0.67 15.95 16 10 O -0.51 -15.78 11.24 -3.32 -0.04 -15.82 16 11 N -0.64 -20.45 5.31 -304.89 -1.62 -22.07 16 12 C 0.18 6.61 6.28 38.20 0.24 6.85 16 13 C -0.19 -6.67 8.69 22.44 0.19 -6.47 16 14 C -0.05 -1.67 10.03 22.23 0.22 -1.45 16 15 C -0.20 -8.57 9.99 22.42 0.22 -8.34 16 16 C 0.13 6.60 6.64 22.56 0.15 6.75 16 17 O -0.22 -13.27 9.76 -22.66 -0.22 -13.49 16 18 C -0.41 -24.06 9.44 67.92 0.64 -23.42 16 19 H 0.10 5.25 5.29 -2.91 -0.02 5.24 16 20 C -0.02 -1.04 5.49 84.83 0.47 -0.57 16 21 N -0.92 -55.84 13.67 21.61 0.30 -55.55 16 22 Si 1.01 42.98 29.55 68.60 2.03 45.01 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 C -0.26 -11.37 9.05 22.52 0.20 -11.16 16 27 C 0.13 2.00 3.43 45.34 0.16 2.16 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 C -0.16 -2.65 7.93 71.98 0.57 -2.08 16 30 H 0.07 0.36 7.59 -2.39 -0.02 0.35 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.46 6.61 -2.39 -0.02 0.44 16 33 H 0.08 0.83 8.02 -2.39 -0.02 0.81 16 34 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.79 6.14 -2.39 -0.01 1.77 16 37 H 0.42 12.56 8.30 -92.70 -0.77 11.80 16 38 H 0.14 4.52 6.27 -2.91 -0.02 4.50 16 39 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.12 5.60 5.71 -2.91 -0.02 5.59 16 43 H 0.04 0.95 6.74 -2.39 -0.02 0.93 16 44 H 0.09 1.07 6.70 -2.39 -0.02 1.06 16 45 H 0.06 0.96 7.53 -2.39 -0.02 0.94 16 Total: -1.00 -72.90 365.81 3.92 -68.98 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.27 Total: 31.50 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 5.69 Total: -7.00 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -3.75 Total: -92.29 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.31 Total: -46.20 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.90 3.92 -68.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267755573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.719 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds