Wall clock time and date at job start Tue Mar 31 2020 16:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47323 * 2 1 4 4 O 1.21288 * 119.99827 * 359.97438 * 3 2 1 5 5 N 1.34767 * 120.00613 * 180.02562 * 3 2 1 6 6 C 1.47027 * 125.64546 * 0.02562 * 5 3 2 7 7 C 1.54323 * 107.27012 * 178.89499 * 6 5 3 8 8 C 1.55150 * 102.94672 * 337.81175 * 7 6 5 9 9 H 1.09005 * 111.00448 * 277.39064 * 8 7 6 10 10 C 1.50698 * 111.00744 * 153.57621 * 8 7 6 11 11 O 1.21287 * 119.99597 * 241.45683 * 10 8 7 12 12 N 1.34770 * 120.00192 * 61.45133 * 10 8 7 13 13 C 1.39925 * 120.00030 * 174.85052 * 12 10 8 14 14 C 1.38960 * 120.03905 * 326.08638 * 13 12 10 15 15 C 1.38157 * 120.06908 * 180.02562 * 14 13 12 16 16 C 1.38165 * 120.13872 * 359.97438 * 15 14 13 17 17 C 1.38908 * 120.07290 * 0.02562 * 16 15 14 18 18 O 1.35753 * 120.03465 * 179.97438 * 17 16 15 19 19 C 1.34835 * 116.99850 * 186.09074 * 18 17 16 20 20 H 1.07999 * 119.99665 * 5.39374 * 19 18 17 21 21 C 1.38651 * 119.99828 * 185.39014 * 19 18 17 22 22 N 1.31557 * 119.99860 * 359.73007 * 21 19 18 23 23 Si 1.86799 * 119.99931 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46831 * 90.00241 * 23 21 19 25 25 H 1.48498 * 109.47182 * 210.00301 * 23 21 19 26 26 H 1.48497 * 109.47240 * 330.00575 * 23 21 19 27 27 C 1.38721 * 120.03677 * 146.40623 * 13 12 10 28 28 C 1.47422 * 125.65349 * 179.97438 * 5 3 2 29 29 H 1.09004 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47309 * 300.00439 * 1 2 3 31 31 H 1.08999 * 109.46984 * 59.99930 * 1 2 3 32 32 H 1.09002 * 109.47078 * 240.00033 * 2 1 3 33 33 H 1.08999 * 109.46984 * 120.00070 * 2 1 3 34 34 H 1.09004 * 109.87819 * 59.48528 * 6 5 3 35 35 H 1.08992 * 110.01518 * 298.38929 * 6 5 3 36 36 H 1.09000 * 110.71971 * 219.44336 * 7 6 5 37 37 H 1.09001 * 110.71737 * 96.17857 * 7 6 5 38 38 H 0.97006 * 120.00278 * 354.84717 * 12 10 8 39 39 H 1.08000 * 119.96095 * 359.97438 * 14 13 12 40 40 H 1.07997 * 119.92705 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.96361 * 179.97438 * 16 15 14 42 42 H 0.97005 * 120.00074 * 179.97438 * 22 21 19 43 43 H 1.08004 * 120.06640 * 359.97438 * 27 13 12 44 44 H 1.09007 * 110.36454 * 85.33612 * 28 5 3 45 45 H 1.08994 * 110.36673 * 323.01047 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4181 0.6491 -0.0017 7 6 5.7688 1.3949 -0.0303 8 6 5.3883 2.7809 -0.6146 9 1 5.3388 2.7458 -1.7030 10 6 6.3520 3.8442 -0.1546 11 8 5.9525 4.7804 0.5049 12 7 7.6578 3.7548 -0.4760 13 6 8.5331 4.7942 -0.1424 14 6 8.0870 6.1102 -0.1543 15 6 8.9509 7.1370 0.1744 16 6 10.2604 6.8592 0.5164 17 6 10.7125 5.5459 0.5302 18 8 11.9995 5.2738 0.8659 19 6 12.4083 3.9954 0.7378 20 1 11.7502 3.2593 0.3004 21 6 13.6737 3.6258 1.1677 22 7 14.4773 4.5237 1.6956 23 14 14.2398 1.8545 0.9909 24 1 14.9059 1.6767 -0.3244 25 1 15.1973 1.5300 2.0786 26 1 13.0663 0.9487 1.0778 27 6 9.8491 4.5128 0.1941 28 6 3.9832 3.0019 -0.0011 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.3247 0.0175 -0.8851 35 1 4.3506 0.0390 0.8989 36 1 6.4780 0.8835 -0.6812 37 1 6.1734 1.4988 0.9765 38 1 7.9909 2.9698 -0.9384 39 1 7.0640 6.3305 -0.4216 40 1 8.6018 8.1590 0.1640 41 1 10.9334 7.6641 0.7725 42 1 15.3624 4.2651 1.9967 43 1 10.1996 3.4912 0.1995 44 1 4.0693 3.3810 1.0173 45 1 3.4050 3.6917 -0.6159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269422132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:33 Heat of formation + Delta-G solvation = -71.487948 kcal Electronic energy + Delta-G solvation = -27505.693088 eV Core-core repulsion = 23488.876794 eV Total energy + Delta-G solvation = -4016.816295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.88663 -39.92821 -38.78969 -37.53874 -36.40297 -34.35790 -33.29116 -32.33055 -32.03599 -29.66598 -29.34771 -28.55239 -25.84396 -25.30503 -23.45727 -22.91898 -21.87318 -21.37390 -19.94051 -19.49692 -18.16270 -17.93700 -17.56329 -17.22447 -16.15567 -15.79041 -15.61420 -15.33617 -15.09727 -14.92174 -14.35894 -14.25215 -13.94436 -13.74732 -13.69881 -13.56456 -13.24207 -13.02128 -12.75156 -12.61966 -12.50602 -12.24617 -12.02060 -11.83997 -11.71118 -11.57847 -11.56630 -11.30856 -11.17502 -10.98203 -10.86248 -10.50631 -10.15993 -9.96861 -9.70333 -9.46479 -9.00890 -8.85645 -7.80143 -7.21371 -6.49369 -4.09359 1.87262 2.31560 2.32037 2.50129 2.73105 3.07307 3.08137 3.12878 3.17240 3.86983 3.91042 4.01842 4.32262 4.41268 4.54607 4.66659 4.68717 4.77172 4.83401 4.86755 5.03829 5.05470 5.17483 5.23048 5.30426 5.40381 5.47453 5.57141 5.57198 5.66151 5.69470 5.82812 5.91414 5.93151 6.01124 6.17859 6.22384 6.57856 6.89029 6.92451 7.05824 7.13332 7.26023 7.36651 7.59171 7.74690 7.83883 7.94233 8.18233 8.95690 9.66048 10.68588 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.002366 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.404927 B =11833.624441 C =13366.150485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.526 3.474 4 O -0.538 6.538 5 N -0.623 5.623 6 C 0.102 3.898 7 C -0.126 4.126 8 C -0.124 4.124 9 H 0.115 0.885 10 C 0.522 3.478 11 O -0.513 6.513 12 N -0.665 5.665 13 C 0.178 3.822 14 C -0.205 4.205 15 C -0.063 4.063 16 C -0.199 4.199 17 C 0.168 3.832 18 O -0.176 6.176 19 C -0.392 4.392 20 H 0.090 0.910 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.255 4.255 28 C 0.126 3.874 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.407 0.593 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.270 0.730 43 H 0.130 0.870 44 H 0.084 0.916 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.190 -12.256 -6.181 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.315 3.685 4 O -0.414 6.414 5 N -0.359 5.359 6 C -0.021 4.021 7 C -0.164 4.164 8 C -0.146 4.146 9 H 0.133 0.867 10 C 0.308 3.692 11 O -0.388 6.388 12 N -0.310 5.310 13 C 0.085 3.915 14 C -0.226 4.226 15 C -0.082 4.082 16 C -0.219 4.219 17 C 0.114 3.886 18 O -0.079 6.079 19 C -0.469 4.469 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.277 4.277 28 C 0.003 3.997 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.242 0.758 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.080 0.920 43 H 0.148 0.852 44 H 0.102 0.898 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.618 -10.982 -5.533 23.153 hybrid contribution 0.678 -1.456 -0.313 1.637 sum -18.939 -12.439 -5.846 23.401 Atomic orbital electron populations 1.21547 0.92893 1.01655 1.03472 1.21620 0.98620 0.93363 1.04296 1.20505 0.80136 0.92053 0.75774 1.90730 1.54223 1.46787 1.49687 1.48561 1.05293 1.08039 1.73974 1.22053 0.86355 0.91343 1.02362 1.22719 0.96872 0.93568 1.03254 1.22479 0.94873 0.94655 1.02618 0.86701 1.20158 0.82472 0.86845 0.79704 1.90763 1.77336 1.33723 1.36953 1.43447 1.07694 1.21346 1.58468 1.17394 0.88909 0.87030 0.98124 1.20529 1.00317 0.90776 1.10996 1.20538 0.92380 0.98047 0.97207 1.20266 0.96471 0.94407 1.10739 1.19085 0.85144 0.92639 0.91780 1.84026 1.20185 1.30087 1.73596 1.21251 1.00008 0.83663 1.41941 0.89273 1.25289 0.95215 0.99946 0.96089 1.70036 1.08192 1.33672 1.37653 0.85721 0.78923 0.80429 0.78362 1.19887 1.20254 1.19317 1.20802 0.93162 1.00326 1.13372 1.21992 0.90432 0.84673 1.02554 0.91971 0.91908 0.91941 0.88931 0.88913 0.90761 0.90704 0.88665 0.89410 0.75830 0.86395 0.86561 0.86338 0.91979 0.85228 0.89760 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.20 37.16 0.34 -0.59 16 2 C -0.14 -0.87 5.61 -27.88 -0.16 -1.03 16 3 C 0.53 5.46 7.85 -10.99 -0.09 5.37 16 4 O -0.54 -7.88 16.24 5.55 0.09 -7.79 16 5 N -0.62 -5.69 3.33 -170.52 -0.57 -6.25 16 6 C 0.10 0.57 6.49 -3.06 -0.02 0.55 16 7 C -0.13 -0.79 6.31 -24.90 -0.16 -0.95 16 8 C -0.12 -1.09 3.44 -89.63 -0.31 -1.40 16 9 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 10 C 0.52 6.89 6.89 -10.99 -0.08 6.81 16 11 O -0.51 -8.89 13.52 5.55 0.08 -8.82 16 12 N -0.67 -9.00 5.30 -9.88 -0.05 -9.05 16 13 C 0.18 3.24 6.26 -83.72 -0.52 2.71 16 14 C -0.21 -3.83 8.65 -39.34 -0.34 -4.17 16 15 C -0.06 -1.16 10.03 -39.64 -0.40 -1.56 16 16 C -0.20 -4.19 9.99 -39.36 -0.39 -4.59 16 17 C 0.17 3.97 6.64 -39.14 -0.26 3.71 16 18 O -0.18 -4.89 9.76 0.03 0.00 -4.89 16 19 C -0.39 -10.56 9.44 30.88 0.29 -10.27 16 20 H 0.09 2.18 5.29 -52.49 -0.28 1.90 16 21 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 22 N -0.86 -24.71 13.67 55.48 0.76 -23.95 16 23 Si 0.94 19.69 29.55 -169.99 -5.02 14.66 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 27 C -0.26 -5.29 9.05 -39.21 -0.35 -5.64 16 28 C 0.13 1.36 5.98 -2.53 -0.02 1.35 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.65 8.03 -51.93 -0.42 0.24 16 38 H 0.41 4.10 8.76 -40.82 -0.36 3.75 16 39 H 0.12 2.15 6.45 -52.49 -0.34 1.81 16 40 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 42 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.13 2.61 5.71 -52.48 -0.30 2.31 16 44 H 0.08 1.07 7.51 -51.92 -0.39 0.68 16 45 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -35.21 377.42 -7.86 -43.07 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.28 Total: 6.07 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.55 Total: -8.74 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.14 Total: -39.26 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.17 Total: -21.49 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.21 -7.86 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269422132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.420 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds