Wall clock time and date at job start Tue Mar 31 2020 16:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47323 * 2 1 4 4 O 1.21288 * 119.99827 * 359.97438 * 3 2 1 5 5 N 1.34767 * 120.00613 * 180.02562 * 3 2 1 6 6 C 1.47027 * 125.64546 * 0.02562 * 5 3 2 7 7 C 1.54323 * 107.27012 * 178.89499 * 6 5 3 8 8 C 1.55150 * 102.94672 * 337.81175 * 7 6 5 9 9 H 1.09005 * 111.00448 * 277.39064 * 8 7 6 10 10 C 1.50698 * 111.00744 * 153.57621 * 8 7 6 11 11 O 1.21287 * 119.99597 * 241.45683 * 10 8 7 12 12 N 1.34770 * 120.00192 * 61.45133 * 10 8 7 13 13 C 1.39925 * 120.00030 * 174.85052 * 12 10 8 14 14 C 1.38960 * 120.03905 * 326.08638 * 13 12 10 15 15 C 1.38157 * 120.06908 * 180.02562 * 14 13 12 16 16 C 1.38165 * 120.13872 * 359.97438 * 15 14 13 17 17 C 1.38908 * 120.07290 * 0.02562 * 16 15 14 18 18 O 1.35753 * 120.03465 * 179.97438 * 17 16 15 19 19 C 1.34835 * 116.99850 * 186.09074 * 18 17 16 20 20 H 1.07999 * 119.99665 * 5.39374 * 19 18 17 21 21 C 1.38651 * 119.99828 * 185.39014 * 19 18 17 22 22 N 1.31557 * 119.99860 * 359.73007 * 21 19 18 23 23 Si 1.86799 * 119.99931 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46831 * 90.00241 * 23 21 19 25 25 H 1.48498 * 109.47182 * 210.00301 * 23 21 19 26 26 H 1.48497 * 109.47240 * 330.00575 * 23 21 19 27 27 C 1.38721 * 120.03677 * 146.40623 * 13 12 10 28 28 C 1.47422 * 125.65349 * 179.97438 * 5 3 2 29 29 H 1.09004 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47309 * 300.00439 * 1 2 3 31 31 H 1.08999 * 109.46984 * 59.99930 * 1 2 3 32 32 H 1.09002 * 109.47078 * 240.00033 * 2 1 3 33 33 H 1.08999 * 109.46984 * 120.00070 * 2 1 3 34 34 H 1.09004 * 109.87819 * 59.48528 * 6 5 3 35 35 H 1.08992 * 110.01518 * 298.38929 * 6 5 3 36 36 H 1.09000 * 110.71971 * 219.44336 * 7 6 5 37 37 H 1.09001 * 110.71737 * 96.17857 * 7 6 5 38 38 H 0.97006 * 120.00278 * 354.84717 * 12 10 8 39 39 H 1.08000 * 119.96095 * 359.97438 * 14 13 12 40 40 H 1.07997 * 119.92705 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.96361 * 179.97438 * 16 15 14 42 42 H 0.97005 * 120.00074 * 179.97438 * 22 21 19 43 43 H 1.08004 * 120.06640 * 359.97438 * 27 13 12 44 44 H 1.09007 * 110.36454 * 85.33612 * 28 5 3 45 45 H 1.08994 * 110.36673 * 323.01047 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4181 0.6491 -0.0017 7 6 5.7688 1.3949 -0.0303 8 6 5.3883 2.7809 -0.6146 9 1 5.3388 2.7458 -1.7030 10 6 6.3520 3.8442 -0.1546 11 8 5.9525 4.7804 0.5049 12 7 7.6578 3.7548 -0.4760 13 6 8.5331 4.7942 -0.1424 14 6 8.0870 6.1102 -0.1543 15 6 8.9509 7.1370 0.1744 16 6 10.2604 6.8592 0.5164 17 6 10.7125 5.5459 0.5302 18 8 11.9995 5.2738 0.8659 19 6 12.4083 3.9954 0.7378 20 1 11.7502 3.2593 0.3004 21 6 13.6737 3.6258 1.1677 22 7 14.4773 4.5237 1.6956 23 14 14.2398 1.8545 0.9909 24 1 14.9059 1.6767 -0.3244 25 1 15.1973 1.5300 2.0786 26 1 13.0663 0.9487 1.0778 27 6 9.8491 4.5128 0.1941 28 6 3.9832 3.0019 -0.0011 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.3247 0.0175 -0.8851 35 1 4.3506 0.0390 0.8989 36 1 6.4780 0.8835 -0.6812 37 1 6.1734 1.4988 0.9765 38 1 7.9909 2.9698 -0.9384 39 1 7.0640 6.3305 -0.4216 40 1 8.6018 8.1590 0.1640 41 1 10.9334 7.6641 0.7725 42 1 15.3624 4.2651 1.9967 43 1 10.1996 3.4912 0.1995 44 1 4.0693 3.3810 1.0173 45 1 3.4050 3.6917 -0.6159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269422132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:32 Heat of formation + Delta-G solvation = -95.895955 kcal Electronic energy + Delta-G solvation = -27506.751499 eV Core-core repulsion = 23488.876794 eV Total energy + Delta-G solvation = -4017.874705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.90774 -40.99724 -40.30665 -38.57096 -37.86025 -35.72270 -34.23039 -33.92713 -32.81272 -30.97113 -30.37071 -29.98723 -27.34506 -26.52067 -24.39736 -23.57446 -23.45917 -22.60448 -21.13763 -20.19872 -19.77217 -19.33873 -18.52844 -18.23725 -17.21449 -16.99773 -16.80149 -16.57651 -16.28662 -16.02839 -15.89654 -15.51658 -15.44927 -14.90983 -14.57991 -14.54447 -14.47390 -14.09435 -13.90909 -13.56475 -13.54558 -13.23329 -13.13410 -12.99570 -12.71832 -12.61780 -12.58824 -12.48426 -12.30441 -12.09365 -12.07453 -11.86739 -11.44729 -11.30539 -10.97525 -10.88014 -10.70923 -9.73982 -9.36484 -8.88779 -8.44274 -6.13319 0.37530 0.68558 1.38544 1.46683 1.53452 1.56397 1.57875 1.72765 2.17415 2.20795 2.84342 3.15152 3.19157 3.36322 3.49557 3.71955 3.74956 4.04274 4.14514 4.18892 4.21783 4.23154 4.29571 4.32338 4.43910 4.56915 4.63101 4.69508 4.73218 4.77798 4.83783 4.93327 4.99308 5.01875 5.04253 5.10237 5.12585 5.20978 5.36327 5.37356 5.46013 5.65715 5.66879 6.02867 6.15404 6.41162 6.47135 6.99783 7.06608 7.10714 7.79324 8.78717 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.002366 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.404927 B =11833.624441 C =13366.150485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.515 3.485 4 O -0.595 6.595 5 N -0.622 5.622 6 C 0.098 3.902 7 C -0.121 4.121 8 C -0.107 4.107 9 H 0.146 0.854 10 C 0.524 3.476 11 O -0.558 6.558 12 N -0.654 5.654 13 C 0.187 3.813 14 C -0.202 4.202 15 C -0.054 4.054 16 C -0.215 4.215 17 C 0.134 3.866 18 O -0.227 6.227 19 C -0.411 4.411 20 H 0.107 0.893 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.246 1.246 27 C -0.256 4.256 28 C 0.124 3.876 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.131 0.869 37 H 0.074 0.926 38 H 0.426 0.574 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.117 0.883 42 H 0.272 0.728 43 H 0.135 0.865 44 H 0.055 0.945 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.596 -16.060 -7.829 27.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.306 3.694 4 O -0.476 6.476 5 N -0.356 5.356 6 C -0.023 4.023 7 C -0.159 4.159 8 C -0.129 4.129 9 H 0.163 0.837 10 C 0.312 3.688 11 O -0.435 6.435 12 N -0.300 5.300 13 C 0.093 3.907 14 C -0.223 4.223 15 C -0.072 4.072 16 C -0.235 4.235 17 C 0.082 3.918 18 O -0.134 6.134 19 C -0.487 4.487 20 H 0.124 0.876 21 C -0.223 4.223 22 N -0.559 5.559 23 Si 0.839 3.161 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.169 1.169 27 C -0.277 4.277 28 C 0.000 4.000 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.149 0.851 37 H 0.093 0.907 38 H 0.265 0.735 39 H 0.146 0.854 40 H 0.168 0.832 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.152 0.848 44 H 0.074 0.926 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.055 -14.836 -7.218 26.749 hybrid contribution 0.832 -0.119 0.168 0.857 sum -20.223 -14.955 -7.050 26.122 Atomic orbital electron populations 1.21563 0.93682 1.02752 1.01705 1.21688 0.97854 0.90565 1.06777 1.21402 0.80024 0.93323 0.74606 1.90704 1.55734 1.48765 1.52356 1.48674 1.05815 1.08077 1.73006 1.22366 0.84386 0.90630 1.04913 1.22830 0.98142 0.91810 1.03146 1.22406 0.91941 0.94498 1.04076 0.83652 1.20938 0.82406 0.87046 0.78374 1.90752 1.77965 1.35852 1.38906 1.43387 1.07324 1.20984 1.58263 1.17412 0.88608 0.88281 0.96407 1.20841 1.00623 0.91134 1.09688 1.20899 0.91050 0.99931 0.95358 1.20471 0.97707 0.93753 1.11559 1.19605 0.84768 0.94415 0.92965 1.83997 1.22465 1.30884 1.76011 1.21832 1.00780 0.83939 1.42172 0.87564 1.26651 0.95012 1.05185 0.95441 1.70199 1.08910 1.36541 1.40271 0.84563 0.78897 0.74142 0.78477 1.18843 1.20215 1.16907 1.20846 0.93834 0.99877 1.13145 1.21804 0.91773 0.85734 1.00715 0.89289 0.93959 0.93565 0.85863 0.86546 0.87316 0.89015 0.85055 0.90735 0.73456 0.85442 0.83184 0.86476 0.91928 0.84754 0.92633 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.20 71.98 0.66 -0.99 16 2 C -0.13 -1.20 5.61 29.85 0.17 -1.03 16 3 C 0.52 9.98 7.85 87.66 0.69 10.67 16 4 O -0.59 -17.88 16.24 -3.05 -0.05 -17.93 16 5 N -0.62 -9.94 3.33 -811.80 -2.70 -12.64 16 6 C 0.10 0.64 6.49 86.73 0.56 1.21 16 7 C -0.12 -0.98 6.31 31.78 0.20 -0.78 16 8 C -0.11 -1.57 3.44 -10.15 -0.03 -1.60 16 9 H 0.15 1.35 8.14 -2.38 -0.02 1.33 16 10 C 0.52 12.73 6.89 87.66 0.60 13.33 16 11 O -0.56 -18.93 13.52 -3.05 -0.04 -18.97 16 12 N -0.65 -15.92 5.30 -303.56 -1.61 -17.53 16 13 C 0.19 6.52 6.26 38.14 0.24 6.76 16 14 C -0.20 -7.23 8.65 22.42 0.19 -7.03 16 15 C -0.05 -1.94 10.03 22.23 0.22 -1.72 16 16 C -0.22 -9.23 9.99 22.41 0.22 -9.01 16 17 C 0.13 6.50 6.64 22.56 0.15 6.65 16 18 O -0.23 -13.26 9.76 -22.82 -0.22 -13.48 16 19 C -0.41 -22.72 9.44 67.92 0.64 -22.08 16 20 H 0.11 5.20 5.29 -2.91 -0.02 5.19 16 21 C -0.03 -1.39 5.49 84.83 0.47 -0.92 16 22 N -0.92 -55.20 13.67 21.61 0.30 -54.91 16 23 Si 1.02 40.27 29.55 68.60 2.03 42.29 16 24 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 25 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 27 C -0.26 -10.49 9.05 22.51 0.20 -10.29 16 28 C 0.12 2.57 5.98 86.86 0.52 3.09 16 29 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 31 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 32 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.12 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.07 0.85 8.03 -2.39 -0.02 0.84 16 38 H 0.43 6.98 8.76 -92.70 -0.81 6.17 16 39 H 0.13 4.40 6.45 -2.91 -0.02 4.38 16 40 H 0.15 4.32 8.06 -2.91 -0.02 4.29 16 41 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 42 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 43 H 0.13 5.29 5.71 -2.91 -0.02 5.27 16 44 H 0.06 1.47 7.51 -2.38 -0.02 1.45 16 45 H 0.07 1.61 8.03 -2.39 -0.02 1.59 16 Total: -1.00 -84.70 377.42 3.62 -81.08 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.21 Total: 25.83 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 5.71 Total: -13.75 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -4.01 Total: -85.08 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.31 Total: -50.38 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Total: -84.70 3.62 -81.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269422132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.812 kcal (2) G-P(sol) polarization free energy of solvation -84.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds