Wall clock time and date at job start Tue Mar 31 2020 17:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.44038 * 2 1 4 4 O 1.42991 * 109.44693 * 119.93997 * 2 1 3 5 5 C 1.35990 * 116.71108 * 166.44897 * 4 2 1 6 6 C 1.38400 * 120.65937 * 147.11626 * 5 4 2 7 7 C 1.38304 * 119.86975 * 180.02562 * 6 5 4 8 8 C 1.38281 * 120.26214 * 0.03046 * 7 6 5 9 9 C 1.38298 * 120.20009 * 359.97438 * 8 7 6 10 10 C 1.38499 * 119.81135 * 359.97438 * 9 8 7 11 11 N 1.40215 * 120.74675 * 180.02562 * 10 9 8 12 12 C 1.46504 * 120.50338 * 15.47555 * 11 10 9 13 13 C 1.53003 * 109.47046 * 89.99869 * 12 11 10 14 14 C 1.50703 * 109.46614 * 179.97438 * 13 12 11 15 15 O 1.21274 * 120.00307 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99383 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99815 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47415 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47168 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99902 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99854 * 179.72538 * 21 19 18 24 24 H 1.48498 * 109.47200 * 59.99994 * 23 21 19 25 25 H 1.48498 * 109.46671 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47156 * 300.00008 * 23 21 19 27 27 C 1.35092 * 118.98417 * 195.74132 * 11 10 9 28 28 O 1.21297 * 120.12942 * 181.40337 * 27 11 10 29 29 H 1.08996 * 109.47214 * 300.05930 * 1 2 3 30 30 H 1.09006 * 109.47434 * 60.05677 * 1 2 3 31 31 H 1.08995 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.06469 * 0.06989 * 6 5 4 33 33 H 1.08005 * 119.87421 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.90016 * 179.97438 * 8 7 6 35 35 H 1.07991 * 120.09350 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.46981 * 329.99514 * 12 11 10 37 37 H 1.09002 * 109.46732 * 209.99573 * 12 11 10 38 38 H 1.08998 * 109.47018 * 59.99892 * 13 12 11 39 39 H 1.09002 * 109.47113 * 299.99470 * 13 12 11 40 40 H 0.96996 * 120.00568 * 0.02562 * 16 14 13 41 41 H 1.09000 * 109.46981 * 59.99638 * 17 16 14 42 42 H 1.09002 * 109.46732 * 299.99696 * 17 16 14 43 43 H 1.08998 * 109.46837 * 59.99777 * 18 17 16 44 44 H 1.09002 * 109.46926 * 299.99581 * 18 17 16 45 45 H 0.97001 * 119.99646 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 8 2.0061 -0.6729 1.1684 5 6 3.3232 -1.0110 1.1851 6 6 4.0349 -1.0184 2.3720 7 6 5.3740 -1.3644 2.3701 8 6 6.0047 -1.7024 1.1868 9 6 5.3001 -1.6972 -0.0032 10 6 3.9586 -1.3526 -0.0077 11 7 3.2254 -1.3413 -1.2027 12 6 3.7459 -2.0045 -2.4009 13 6 3.2702 -3.4585 -2.4264 14 6 3.8052 -4.1404 -3.6593 15 8 4.4983 -3.5241 -4.4407 16 7 3.5134 -5.4352 -3.8933 17 6 4.0340 -6.0983 -5.0915 18 6 3.5592 -7.5526 -5.1165 19 6 4.0941 -8.2345 -6.3493 20 1 4.7107 -7.6855 -7.0456 21 6 3.7964 -9.5594 -6.5883 22 7 3.0452 -10.2279 -5.7407 23 14 4.4532 -10.4026 -8.1204 24 1 5.9377 -10.3649 -8.1083 25 1 3.9945 -11.8147 -8.1433 26 1 3.9500 -9.6984 -9.3272 27 6 2.0341 -0.7050 -1.2339 28 8 1.3708 -0.7039 -2.2494 29 1 -0.3633 0.5147 0.8894 30 1 -0.3634 0.5130 -0.8905 31 1 -0.3633 -1.0276 0.0005 32 1 3.5454 -0.7553 3.2980 33 1 5.9293 -1.3706 3.2964 34 1 7.0507 -1.9712 1.1920 35 1 5.7943 -1.9618 -0.9262 36 1 4.8355 -1.9789 -2.3859 37 1 3.3825 -1.4876 -3.2891 38 1 2.1806 -3.4840 -2.4414 39 1 3.6337 -3.9753 -1.5382 40 1 2.9588 -5.9280 -3.2685 41 1 5.1236 -6.0723 -5.0767 42 1 3.6702 -5.5817 -5.9797 43 1 2.4697 -7.5789 -5.1310 44 1 3.9234 -8.0690 -4.2283 45 1 2.8361 -11.1601 -5.9087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273065368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:49 Heat of formation + Delta-G solvation = -85.019675 kcal Electronic energy + Delta-G solvation = -27752.201775 eV Core-core repulsion = 23734.798701 eV Total energy + Delta-G solvation = -4017.403074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.98496 -39.48071 -39.16875 -38.08442 -36.22143 -34.91243 -32.89189 -32.54934 -31.98413 -30.63222 -29.76281 -29.05632 -26.24178 -24.64428 -23.71138 -23.61905 -22.25932 -20.97882 -20.08746 -19.70623 -19.58779 -17.61108 -17.56050 -16.86748 -16.39436 -15.84417 -15.62825 -15.54882 -15.28017 -15.06765 -14.88034 -14.54207 -14.50125 -14.43805 -13.83050 -13.54143 -13.41592 -13.02645 -12.84871 -12.65393 -12.56793 -12.42945 -12.27476 -12.26966 -11.61962 -11.53492 -11.25867 -11.23633 -11.02788 -10.78173 -10.67262 -10.34954 -10.20671 -9.86800 -9.50771 -9.24597 -9.05505 -8.57998 -8.38320 -8.21283 -6.10670 -4.13810 0.69474 0.87275 1.95699 2.10836 2.81815 2.91579 3.30278 3.30768 3.34133 3.37036 3.54673 3.69138 4.23747 4.32014 4.40605 4.44497 4.58140 4.70366 4.73172 4.81259 4.90400 5.00074 5.05169 5.24888 5.26242 5.26870 5.32576 5.37476 5.52964 5.56485 5.68124 5.76742 5.81400 6.02224 6.09349 6.25545 6.30313 6.31803 6.54486 6.70571 6.86220 6.97377 7.40083 7.48953 7.59309 7.86792 7.94540 8.25300 8.56676 8.91891 9.51045 11.00906 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.002180 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.201700 B =12841.737866 C =13572.615036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.102 0.898 4 O -0.302 6.302 5 C 0.076 3.924 6 C -0.109 4.109 7 C -0.113 4.113 8 C -0.108 4.108 9 C -0.124 4.124 10 C 0.098 3.902 11 N -0.551 5.551 12 C 0.125 3.875 13 C -0.157 4.157 14 C 0.512 3.488 15 O -0.553 6.553 16 N -0.720 5.720 17 C 0.121 3.879 18 C 0.013 3.987 19 C -0.523 4.523 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.487 3.513 28 O -0.497 6.497 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.398 0.602 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 22.160 20.565 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.020 3.980 3 H 0.120 0.880 4 O -0.217 6.217 5 C 0.030 3.970 6 C -0.128 4.128 7 C -0.132 4.132 8 C -0.127 4.127 9 C -0.144 4.144 10 C 0.004 3.996 11 N -0.275 5.275 12 C 0.004 3.996 13 C -0.199 4.199 14 C 0.297 3.703 15 O -0.432 6.432 16 N -0.369 5.369 17 C -0.001 4.001 18 C -0.025 4.025 19 C -0.562 4.562 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C 0.275 3.725 28 O -0.370 6.370 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.232 0.768 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.137 22.377 19.495 29.678 hybrid contribution 0.179 -0.943 -0.693 1.184 sum 0.315 21.434 18.802 28.513 Atomic orbital electron populations 1.21720 0.88811 1.04578 1.04104 1.22653 0.98113 0.96153 0.81071 0.88047 1.86244 1.21552 1.74221 1.39645 1.18620 0.83562 1.02059 0.92779 1.20529 0.93562 1.02368 0.96321 1.21014 0.93718 0.99803 0.98656 1.21044 1.00364 0.99690 0.91601 1.20830 0.91267 1.02464 0.99881 1.18165 0.92799 1.03749 0.84935 1.45831 1.19412 1.51583 1.10691 1.21442 1.00258 0.91580 0.86332 1.21965 1.03475 0.96255 0.98163 1.20226 0.80783 0.82483 0.86815 1.90681 1.39136 1.64842 1.48511 1.46336 1.52628 1.10985 1.26982 1.21748 0.98152 0.95442 0.84766 1.19320 0.97128 0.87957 0.98074 1.21010 1.32144 0.95898 1.07115 0.92291 1.25004 0.95013 0.97408 0.96855 1.69946 1.37124 1.09968 1.36265 0.86561 0.79361 0.78350 0.83204 1.20097 1.21219 1.20084 1.21582 0.80576 0.79344 0.91003 1.90786 1.54770 1.58500 1.32986 0.90168 0.88931 0.90913 0.84436 0.84890 0.84944 0.84526 0.88515 0.87916 0.88539 0.88676 0.76796 0.92484 0.92490 0.95943 0.95938 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.16 37.16 0.34 -0.64 16 2 C 0.08 0.70 3.67 -27.84 -0.10 0.60 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 4 O -0.30 -2.92 10.09 -19.71 -0.20 -3.12 16 5 C 0.08 0.72 6.44 -39.09 -0.25 0.47 16 6 C -0.11 -0.80 10.00 -39.50 -0.39 -1.20 16 7 C -0.11 -0.71 10.04 -39.54 -0.40 -1.11 16 8 C -0.11 -0.75 10.04 -39.54 -0.40 -1.15 16 9 C -0.12 -1.08 9.36 -39.46 -0.37 -1.45 16 10 C 0.10 0.99 6.39 -83.49 -0.53 0.46 16 11 N -0.55 -6.26 2.72 -113.20 -0.31 -6.57 16 12 C 0.12 1.53 4.50 -4.04 -0.02 1.51 16 13 C -0.16 -1.99 6.02 -27.88 -0.17 -2.16 16 14 C 0.51 8.53 7.83 -10.99 -0.09 8.44 16 15 O -0.55 -11.01 15.98 5.56 0.09 -10.92 16 16 N -0.72 -12.58 5.56 -60.29 -0.33 -12.92 16 17 C 0.12 2.59 5.61 -4.04 -0.02 2.56 16 18 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 19 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 23 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.49 5.77 7.38 -10.80 -0.08 5.70 16 28 O -0.50 -7.24 15.83 5.54 0.09 -7.15 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.66 7.86 -51.93 -0.41 0.25 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.14 1.13 6.12 -52.49 -0.32 0.81 16 36 H 0.10 1.09 5.92 -51.93 -0.31 0.78 16 37 H 0.10 1.44 7.44 -51.93 -0.39 1.06 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.40 6.09 8.47 -40.82 -0.35 5.74 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -33.70 379.72 -8.64 -42.34 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.38 Total: 2.80 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.03 Total: -1.10 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.09 Total: -45.00 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.02 Total: -21.19 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.70 -8.64 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273065368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.679 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds