Wall clock time and date at job start Tue Mar 31 2020 17:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.44038 * 2 1 4 4 O 1.42991 * 109.44693 * 119.93997 * 2 1 3 5 5 C 1.35990 * 116.71108 * 166.44897 * 4 2 1 6 6 C 1.38400 * 120.65937 * 147.11626 * 5 4 2 7 7 C 1.38304 * 119.86975 * 180.02562 * 6 5 4 8 8 C 1.38281 * 120.26214 * 0.03046 * 7 6 5 9 9 C 1.38298 * 120.20009 * 359.97438 * 8 7 6 10 10 C 1.38499 * 119.81135 * 359.97438 * 9 8 7 11 11 N 1.40215 * 120.74675 * 180.02562 * 10 9 8 12 12 C 1.46504 * 120.50338 * 15.47555 * 11 10 9 13 13 C 1.53003 * 109.47046 * 89.99869 * 12 11 10 14 14 C 1.50703 * 109.46614 * 179.97438 * 13 12 11 15 15 O 1.21274 * 120.00307 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99383 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99815 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47415 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47168 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99902 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99854 * 179.72538 * 21 19 18 24 24 H 1.48498 * 109.47200 * 59.99994 * 23 21 19 25 25 H 1.48498 * 109.46671 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47156 * 300.00008 * 23 21 19 27 27 C 1.35092 * 118.98417 * 195.74132 * 11 10 9 28 28 O 1.21297 * 120.12942 * 181.40337 * 27 11 10 29 29 H 1.08996 * 109.47214 * 300.05930 * 1 2 3 30 30 H 1.09006 * 109.47434 * 60.05677 * 1 2 3 31 31 H 1.08995 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.06469 * 0.06989 * 6 5 4 33 33 H 1.08005 * 119.87421 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.90016 * 179.97438 * 8 7 6 35 35 H 1.07991 * 120.09350 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.46981 * 329.99514 * 12 11 10 37 37 H 1.09002 * 109.46732 * 209.99573 * 12 11 10 38 38 H 1.08998 * 109.47018 * 59.99892 * 13 12 11 39 39 H 1.09002 * 109.47113 * 299.99470 * 13 12 11 40 40 H 0.96996 * 120.00568 * 0.02562 * 16 14 13 41 41 H 1.09000 * 109.46981 * 59.99638 * 17 16 14 42 42 H 1.09002 * 109.46732 * 299.99696 * 17 16 14 43 43 H 1.08998 * 109.46837 * 59.99777 * 18 17 16 44 44 H 1.09002 * 109.46926 * 299.99581 * 18 17 16 45 45 H 0.97001 * 119.99646 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 8 2.0061 -0.6729 1.1684 5 6 3.3232 -1.0110 1.1851 6 6 4.0349 -1.0184 2.3720 7 6 5.3740 -1.3644 2.3701 8 6 6.0047 -1.7024 1.1868 9 6 5.3001 -1.6972 -0.0032 10 6 3.9586 -1.3526 -0.0077 11 7 3.2254 -1.3413 -1.2027 12 6 3.7459 -2.0045 -2.4009 13 6 3.2702 -3.4585 -2.4264 14 6 3.8052 -4.1404 -3.6593 15 8 4.4983 -3.5241 -4.4407 16 7 3.5134 -5.4352 -3.8933 17 6 4.0340 -6.0983 -5.0915 18 6 3.5592 -7.5526 -5.1165 19 6 4.0941 -8.2345 -6.3493 20 1 4.7107 -7.6855 -7.0456 21 6 3.7964 -9.5594 -6.5883 22 7 3.0452 -10.2279 -5.7407 23 14 4.4532 -10.4026 -8.1204 24 1 5.9377 -10.3649 -8.1083 25 1 3.9945 -11.8147 -8.1433 26 1 3.9500 -9.6984 -9.3272 27 6 2.0341 -0.7050 -1.2339 28 8 1.3708 -0.7039 -2.2494 29 1 -0.3633 0.5147 0.8894 30 1 -0.3634 0.5130 -0.8905 31 1 -0.3633 -1.0276 0.0005 32 1 3.5454 -0.7553 3.2980 33 1 5.9293 -1.3706 3.2964 34 1 7.0507 -1.9712 1.1920 35 1 5.7943 -1.9618 -0.9262 36 1 4.8355 -1.9789 -2.3859 37 1 3.3825 -1.4876 -3.2891 38 1 2.1806 -3.4840 -2.4414 39 1 3.6337 -3.9753 -1.5382 40 1 2.9588 -5.9280 -3.2685 41 1 5.1236 -6.0723 -5.0767 42 1 3.6702 -5.5817 -5.9797 43 1 2.4697 -7.5789 -5.1310 44 1 3.9234 -8.0690 -4.2283 45 1 2.8361 -11.1601 -5.9087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273065368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:48 Heat of formation + Delta-G solvation = -106.717620 kcal Electronic energy + Delta-G solvation = -27753.142669 eV Core-core repulsion = 23734.798701 eV Total energy + Delta-G solvation = -4018.343968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.74617 -40.81889 -40.02915 -38.79935 -37.11436 -36.59945 -34.85851 -33.30546 -33.00017 -31.47369 -31.24652 -29.85287 -27.49512 -26.21629 -24.49492 -24.36212 -23.21553 -22.69744 -21.46609 -20.45373 -20.31012 -18.78725 -18.41312 -18.26390 -17.76561 -16.94449 -16.82741 -16.67130 -16.47178 -16.30376 -15.81714 -15.67815 -15.46653 -15.42093 -14.97709 -14.66822 -14.30491 -14.29272 -14.05757 -13.90284 -13.60365 -13.26067 -13.18041 -13.16832 -12.94088 -12.82941 -12.56298 -12.40070 -12.25585 -12.19571 -12.10480 -11.70843 -11.60479 -11.50350 -11.04999 -10.92057 -10.62483 -10.08490 -9.67123 -8.93181 -8.26210 -6.37136 0.03649 0.28560 1.14495 1.27293 1.40460 1.42815 1.50893 1.53121 2.14453 2.24132 2.43607 2.73077 2.82598 3.08475 3.53921 3.61962 3.68279 3.77474 3.83474 3.86403 4.01816 4.19805 4.30642 4.35887 4.42809 4.47380 4.49210 4.51615 4.64837 4.70863 4.74058 4.80316 4.81796 4.98141 5.11805 5.23344 5.26322 5.30165 5.44717 5.54347 5.54529 5.70106 5.75498 5.80638 6.13136 6.27352 6.51542 6.54374 6.75944 7.16181 7.32322 8.85513 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.002180 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.201700 B =12841.737866 C =13572.615036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.082 3.918 3 H 0.122 0.878 4 O -0.307 6.307 5 C 0.060 3.940 6 C -0.109 4.109 7 C -0.103 4.103 8 C -0.109 4.109 9 C -0.133 4.133 10 C 0.073 3.927 11 N -0.550 5.550 12 C 0.129 3.871 13 C -0.140 4.140 14 C 0.515 3.485 15 O -0.585 6.585 16 N -0.717 5.717 17 C 0.140 3.860 18 C 0.022 3.978 19 C -0.549 4.549 20 H 0.059 0.941 21 C 0.007 3.993 22 N -0.927 5.927 23 Si 0.966 3.034 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.269 1.269 27 C 0.479 3.521 28 O -0.536 6.536 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.411 0.589 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.006 0.994 44 H 0.010 0.990 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 22.660 22.408 31.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.023 3.977 3 H 0.140 0.860 4 O -0.222 6.222 5 C 0.014 3.986 6 C -0.128 4.128 7 C -0.121 4.121 8 C -0.127 4.127 9 C -0.153 4.153 10 C -0.020 4.020 11 N -0.274 5.274 12 C 0.007 3.993 13 C -0.181 4.181 14 C 0.302 3.698 15 O -0.466 6.466 16 N -0.367 5.367 17 C 0.016 3.984 18 C -0.015 4.015 19 C -0.587 4.587 20 H 0.078 0.922 21 C -0.192 4.192 22 N -0.566 5.566 23 Si 0.790 3.210 24 H -0.192 1.192 25 H -0.205 1.205 26 H -0.194 1.194 27 C 0.268 3.732 28 O -0.412 6.412 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.173 0.827 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.137 0.863 40 H 0.246 0.754 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.024 0.976 44 H 0.028 0.972 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.183 22.887 21.392 31.350 hybrid contribution -0.082 -1.069 -1.162 1.581 sum 1.101 21.817 20.230 29.773 Atomic orbital electron populations 1.21736 0.87745 1.04127 1.05213 1.22787 0.98866 0.96506 0.79515 0.86031 1.86231 1.21945 1.74520 1.39539 1.18922 0.83633 1.02749 0.93305 1.20867 0.94037 1.01650 0.96250 1.21420 0.93357 0.97715 0.99627 1.21374 1.01377 0.98826 0.91119 1.20979 0.90926 1.02640 1.00765 1.18371 0.93426 1.05744 0.84502 1.45798 1.19506 1.51264 1.10868 1.21268 1.00695 0.91010 0.86295 1.21850 1.03301 0.96295 0.96666 1.20811 0.79818 0.81748 0.87439 1.90666 1.40596 1.65405 1.49892 1.46168 1.52892 1.11509 1.26151 1.21251 0.97617 0.93494 0.85990 1.19132 0.95837 0.89835 0.96694 1.21444 1.32451 0.96651 1.08169 0.92228 1.25894 0.95145 0.98121 1.00058 1.70054 1.38128 1.10395 1.38071 0.85488 0.79036 0.77282 0.79198 1.19157 1.20548 1.19416 1.22237 0.80343 0.79052 0.91553 1.90759 1.55861 1.60087 1.34489 0.87767 0.89029 0.92143 0.82524 0.81785 0.82741 0.84662 0.87640 0.90235 0.88341 0.86343 0.75380 0.93066 0.93673 0.97579 0.97175 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.16 71.98 0.66 -1.15 16 2 C 0.08 1.40 3.67 29.87 0.11 1.51 16 3 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 4 O -0.31 -5.56 10.09 -93.44 -0.94 -6.50 16 5 C 0.06 1.05 6.44 22.59 0.15 1.19 16 6 C -0.11 -1.31 10.00 22.32 0.22 -1.09 16 7 C -0.10 -0.93 10.04 22.30 0.22 -0.71 16 8 C -0.11 -1.21 10.04 22.29 0.22 -0.98 16 9 C -0.13 -2.12 9.36 22.35 0.21 -1.91 16 10 C 0.07 1.40 6.39 38.14 0.24 1.65 16 11 N -0.55 -12.53 2.72 -630.24 -1.71 -14.24 16 12 C 0.13 3.22 4.50 86.38 0.39 3.61 16 13 C -0.14 -3.51 6.02 29.85 0.18 -3.33 16 14 C 0.51 17.20 7.83 87.66 0.69 17.89 16 15 O -0.58 -23.63 15.98 -3.01 -0.05 -23.68 16 16 N -0.72 -25.15 5.56 -463.05 -2.57 -27.73 16 17 C 0.14 6.08 5.61 86.38 0.48 6.57 16 18 C 0.02 1.14 5.09 29.85 0.15 1.30 16 19 C -0.55 -30.90 9.11 25.60 0.23 -30.66 16 20 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 21 C 0.01 0.38 5.46 84.66 0.46 0.84 16 22 N -0.93 -54.77 13.29 21.45 0.28 -54.49 16 23 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 C 0.48 11.52 7.38 87.63 0.65 12.17 16 28 O -0.54 -16.23 15.83 -3.08 -0.05 -16.28 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.28 7.86 -2.38 -0.02 1.27 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.16 0.48 8.06 -2.91 -0.02 0.45 16 34 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.14 2.11 6.12 -2.92 -0.02 2.09 16 36 H 0.11 2.40 5.92 -2.39 -0.01 2.38 16 37 H 0.08 2.36 7.44 -2.39 -0.02 2.34 16 38 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.41 12.47 8.47 -92.71 -0.79 11.69 16 41 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -73.38 379.72 2.49 -70.89 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.23 Total: 19.31 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 5.27 Total: 6.88 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -4.00 Total: -96.46 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -1.04 Total: -46.46 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -73.38 2.49 -70.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273065368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.827 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds