Wall clock time and date at job start Tue Mar 31 2020 18:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47843 * 2 1 4 4 N 1.46502 * 109.47205 * 120.00428 * 2 1 3 5 5 C 1.34784 * 119.99247 * 274.99635 * 4 2 1 6 6 O 1.21681 * 120.00577 * 0.02562 * 5 4 2 7 7 C 1.46377 * 119.99300 * 179.97438 * 5 4 2 8 8 H 1.07991 * 120.00498 * 359.72727 * 7 5 4 9 9 C 1.40055 * 119.99662 * 180.02562 * 7 5 4 10 10 N 1.30678 * 119.99850 * 359.72880 * 9 7 5 11 11 Si 1.86798 * 119.99788 * 179.72946 * 9 7 5 12 12 H 1.48490 * 109.47339 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47239 * 120.00201 * 11 9 7 14 14 H 1.48504 * 109.46636 * 239.99760 * 11 9 7 15 15 C 1.50703 * 109.46956 * 239.99875 * 2 1 3 16 16 C 1.38271 * 119.94302 * 279.72660 * 15 2 1 17 17 C 1.38145 * 120.05546 * 179.72312 * 16 15 2 18 18 C 1.38742 * 119.94153 * 0.55378 * 17 16 15 19 19 O 1.35898 * 120.05240 * 179.74458 * 18 17 16 20 20 C 1.42896 * 117.00231 * 359.97438 * 19 18 17 21 21 C 1.50707 * 109.47137 * 179.97438 * 20 19 18 22 22 O 1.21280 * 119.99666 * 0.02562 * 21 20 19 23 23 N 1.34767 * 119.99797 * 180.02562 * 21 20 19 24 24 C 1.46502 * 119.99846 * 180.02562 * 23 21 20 25 25 C 1.53002 * 117.50046 * 223.74361 * 24 23 21 26 26 C 1.52998 * 117.50219 * 155.08191 * 24 23 21 27 27 C 1.38735 * 119.88723 * 359.72407 * 18 17 16 28 28 C 1.38140 * 119.94329 * 0.02562 * 27 18 17 29 29 H 1.08993 * 109.47422 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46776 * 300.00369 * 1 2 3 31 31 H 1.09003 * 109.47006 * 59.99815 * 1 2 3 32 32 H 0.96990 * 120.00490 * 94.99152 * 4 2 1 33 33 H 0.97000 * 119.99610 * 180.02562 * 10 9 7 34 34 H 1.07996 * 119.97324 * 0.02562 * 16 15 2 35 35 H 1.07995 * 120.02987 * 180.27722 * 17 16 15 36 36 H 1.09000 * 109.46998 * 299.99806 * 20 19 18 37 37 H 1.09006 * 109.47303 * 60.00010 * 20 19 18 38 38 H 0.97002 * 120.00544 * 359.97438 * 23 21 20 39 39 H 1.09000 * 115.54708 * 9.41433 * 24 23 21 40 40 H 1.08998 * 117.49473 * 359.97438 * 25 24 23 41 41 H 1.08999 * 117.49552 * 145.01698 * 25 24 23 42 42 H 1.09001 * 117.50450 * 214.98050 * 26 24 23 43 43 H 1.09001 * 117.49903 * 359.97438 * 26 24 23 44 44 H 1.07994 * 120.02319 * 179.97438 * 27 18 17 45 45 H 1.07999 * 119.97136 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8573 1.1623 2.4119 7 6 2.6345 -0.7085 3.5524 8 1 2.8867 -1.7574 3.5051 9 6 2.7678 -0.0099 4.7589 10 7 2.4621 1.2593 4.8163 11 14 3.3826 -0.8925 6.2861 12 1 3.6571 -2.3148 5.9591 13 1 4.6302 -0.2443 6.7640 14 1 2.3486 -0.8202 7.3495 15 6 2.0323 -0.7105 -1.2305 16 6 2.0715 -2.0922 -1.2619 17 6 2.5261 -2.7460 -2.3908 18 6 2.9544 -2.0147 -3.4893 19 8 3.4069 -2.6554 -4.5990 20 6 3.4148 -4.0839 -4.5655 21 6 3.9440 -4.6142 -5.8732 22 8 4.2817 -3.8445 -6.7474 23 7 4.0420 -5.9437 -6.0709 24 6 4.5570 -6.4592 -7.3419 25 6 3.8174 -7.6379 -7.9779 26 6 5.1899 -7.8521 -7.3349 27 6 2.9194 -0.6282 -3.4530 28 6 2.4591 0.0206 -2.3237 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2489 -1.6318 1.1526 33 1 2.5547 1.7432 5.6518 34 1 1.7418 -2.6610 -0.4051 35 1 2.5523 -3.8253 -2.4166 36 1 4.0526 -4.4247 -3.7500 37 1 2.3996 -4.4493 -4.4099 38 1 3.7723 -6.5593 -5.3715 39 1 4.9871 -5.7144 -8.0115 40 1 2.9478 -8.0300 -7.4505 41 1 3.7611 -7.6687 -9.0660 42 1 6.0360 -8.0239 -8.0002 43 1 5.2235 -8.3849 -6.3845 44 1 3.2527 -0.0568 -4.3066 45 1 2.4313 1.0999 -2.2951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274582016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:43 Heat of formation + Delta-G solvation = -59.024351 kcal Electronic energy + Delta-G solvation = -26742.721440 eV Core-core repulsion = 22726.445608 eV Total energy + Delta-G solvation = -4016.275832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.68360 -39.82793 -38.32782 -37.45999 -36.77696 -34.02968 -33.45641 -32.37613 -31.06014 -30.40211 -29.11971 -27.86500 -26.09529 -23.36753 -23.28951 -22.96439 -22.19522 -21.19259 -20.71941 -19.23723 -18.57796 -17.62434 -17.44135 -16.95654 -16.66406 -15.76237 -15.51084 -15.22893 -15.03200 -14.69758 -14.63108 -14.39098 -13.93096 -13.54528 -13.39634 -13.29645 -13.20497 -12.86263 -12.63081 -12.36699 -12.28616 -12.16581 -11.90823 -11.59955 -11.49714 -11.11397 -11.07447 -11.05844 -10.88974 -10.73077 -10.49612 -10.35290 -10.26262 -10.17617 -9.33461 -8.93884 -8.86323 -8.07946 -7.58880 -7.51741 -6.18394 -4.63829 1.40061 1.48358 2.04510 2.09015 3.12433 3.20659 3.24781 3.29016 3.33861 3.81689 4.10826 4.10997 4.18711 4.36154 4.42066 4.54963 4.59356 4.65116 4.81304 4.88878 4.91097 5.06028 5.10695 5.21686 5.35558 5.45505 5.48912 5.49643 5.67188 5.74597 5.89085 5.91506 6.07697 6.12708 6.20659 6.29431 6.40513 6.51052 6.72479 6.79290 6.87710 6.93664 7.30142 7.43511 7.67978 7.92899 8.11063 8.33537 9.02849 9.53771 10.60339 10.79219 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017789 B = 0.001919 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.600642 B =14589.015178 C =15696.527327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.191 3.809 3 H 0.084 0.916 4 N -0.760 5.760 5 C 0.556 3.444 6 O -0.579 6.579 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.087 3.913 10 N -0.767 5.767 11 Si 0.906 3.094 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.276 1.276 15 C -0.105 4.105 16 C -0.072 4.072 17 C -0.207 4.207 18 C 0.113 3.887 19 O -0.293 6.293 20 C 0.043 3.957 21 C 0.521 3.479 22 O -0.512 6.512 23 N -0.702 5.702 24 C 0.080 3.920 25 C -0.193 4.193 26 C -0.188 4.188 27 C -0.143 4.143 28 C -0.072 4.072 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.378 0.622 33 H 0.267 0.733 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.404 0.596 39 H 0.140 0.860 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -18.161 -21.197 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.084 3.916 3 H 0.102 0.898 4 N -0.416 5.416 5 C 0.360 3.640 6 O -0.462 6.462 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.396 5.396 11 Si 0.731 3.269 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.106 4.106 16 C -0.090 4.090 17 C -0.225 4.225 18 C 0.069 3.931 19 O -0.206 6.206 20 C -0.036 4.036 21 C 0.306 3.694 22 O -0.385 6.385 23 N -0.355 5.355 24 C -0.026 4.026 25 C -0.231 4.231 26 C -0.226 4.226 27 C -0.162 4.162 28 C -0.091 4.091 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.210 0.790 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.238 0.762 39 H 0.157 0.843 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.148 0.852 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.661 -16.405 -21.841 27.367 hybrid contribution 0.212 -1.600 1.267 2.052 sum 1.873 -18.005 -20.574 27.404 Atomic orbital electron populations 1.22155 0.96019 1.01188 1.01700 1.19364 0.92965 0.96727 0.82497 0.89818 1.46292 1.73233 1.12758 1.09316 1.18214 0.77775 0.86414 0.81606 1.90594 1.54730 1.16383 1.84472 1.20911 1.46929 0.97056 0.93339 0.91498 1.25702 0.93340 0.94475 0.99691 1.70032 1.35280 1.08123 1.26159 0.86339 0.78784 0.80284 0.81475 1.18839 1.20189 1.20199 1.20237 1.00105 0.93831 0.96402 1.20786 0.97171 0.94090 0.96981 1.21133 1.07253 0.99584 0.94568 1.18953 0.96335 0.92192 0.85633 1.86116 1.80724 1.17514 1.36204 1.22355 1.02781 0.82166 0.96277 1.20139 0.78264 0.82178 0.88769 1.90761 1.46910 1.56363 1.44462 1.45186 1.66579 1.06537 1.17156 1.21615 1.01890 0.91093 0.87985 1.23463 0.95877 1.02518 1.01253 1.23414 0.97161 0.98736 1.03317 1.20366 1.05064 0.90918 0.99852 1.20902 0.96316 1.00146 0.91717 0.93337 0.91532 0.93157 0.78952 0.92194 0.85496 0.85798 0.88758 0.88856 0.76154 0.84284 0.88340 0.87808 0.87676 0.88276 0.85194 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.46 37.16 0.35 -2.31 16 2 C 0.19 3.61 2.78 -69.08 -0.19 3.42 16 3 H 0.08 1.79 7.43 -51.93 -0.39 1.40 16 4 N -0.76 -16.65 5.02 -56.34 -0.28 -16.93 16 5 C 0.56 15.55 7.71 -12.98 -0.10 15.45 16 6 O -0.58 -18.41 14.68 5.21 0.08 -18.33 16 7 C -0.55 -15.25 9.54 -35.63 -0.34 -15.59 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 9 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 10 N -0.77 -22.88 11.83 55.55 0.66 -22.22 16 11 Si 0.91 20.02 29.56 -169.99 -5.02 14.99 16 12 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 C -0.10 -1.63 4.96 -104.60 -0.52 -2.15 16 16 C -0.07 -0.98 9.05 -39.60 -0.36 -1.34 16 17 C -0.21 -2.45 9.04 -39.43 -0.36 -2.80 16 18 C 0.11 1.48 6.69 -39.21 -0.26 1.21 16 19 O -0.29 -3.73 9.67 -39.33 -0.38 -4.11 16 20 C 0.04 0.36 5.22 36.01 0.19 0.55 16 21 C 0.52 5.01 7.91 -10.99 -0.09 4.93 16 22 O -0.51 -7.34 16.07 -14.35 -0.23 -7.57 16 23 N -0.70 -4.27 5.57 -53.80 -0.30 -4.57 16 24 C 0.08 0.49 6.43 -67.93 -0.44 0.05 16 25 C -0.19 -0.83 10.46 -26.69 -0.28 -1.11 16 26 C -0.19 -0.75 10.46 -26.69 -0.28 -1.03 16 27 C -0.14 -1.93 9.99 -39.43 -0.39 -2.32 16 28 C -0.07 -1.03 9.66 -39.61 -0.38 -1.41 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.38 7.31 6.83 -40.82 -0.28 7.03 16 33 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 34 H 0.13 1.62 6.89 -52.49 -0.36 1.26 16 35 H 0.12 1.06 6.30 -52.49 -0.33 0.73 16 36 H 0.09 0.58 7.66 -51.93 -0.40 0.19 16 37 H 0.09 0.55 7.66 -51.93 -0.40 0.15 16 38 H 0.40 1.17 8.83 -40.82 -0.36 0.81 16 39 H 0.14 1.08 7.40 -51.93 -0.38 0.70 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.13 1.69 8.03 -52.49 -0.42 1.27 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -37.75 386.79 -9.44 -47.20 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.25 Total: 7.81 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -3.54 Total: -2.10 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.07 Total: -43.72 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.53 Total: -30.01 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.75 -9.44 -47.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274582016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.825 kcal (2) G-P(sol) polarization free energy of solvation -37.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds