Wall clock time and date at job start Tue Mar 31 2020 18:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47843 * 2 1 4 4 N 1.46502 * 109.47205 * 120.00428 * 2 1 3 5 5 C 1.34784 * 119.99247 * 274.99635 * 4 2 1 6 6 O 1.21681 * 120.00577 * 0.02562 * 5 4 2 7 7 C 1.46377 * 119.99300 * 179.97438 * 5 4 2 8 8 H 1.07991 * 120.00498 * 359.72727 * 7 5 4 9 9 C 1.40055 * 119.99662 * 180.02562 * 7 5 4 10 10 N 1.30678 * 119.99850 * 359.72880 * 9 7 5 11 11 Si 1.86798 * 119.99788 * 179.72946 * 9 7 5 12 12 H 1.48490 * 109.47339 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47239 * 120.00201 * 11 9 7 14 14 H 1.48504 * 109.46636 * 239.99760 * 11 9 7 15 15 C 1.50703 * 109.46956 * 239.99875 * 2 1 3 16 16 C 1.38271 * 119.94302 * 279.72660 * 15 2 1 17 17 C 1.38145 * 120.05546 * 179.72312 * 16 15 2 18 18 C 1.38742 * 119.94153 * 0.55378 * 17 16 15 19 19 O 1.35898 * 120.05240 * 179.74458 * 18 17 16 20 20 C 1.42896 * 117.00231 * 359.97438 * 19 18 17 21 21 C 1.50707 * 109.47137 * 179.97438 * 20 19 18 22 22 O 1.21280 * 119.99666 * 0.02562 * 21 20 19 23 23 N 1.34767 * 119.99797 * 180.02562 * 21 20 19 24 24 C 1.46502 * 119.99846 * 180.02562 * 23 21 20 25 25 C 1.53002 * 117.50046 * 223.74361 * 24 23 21 26 26 C 1.52998 * 117.50219 * 155.08191 * 24 23 21 27 27 C 1.38735 * 119.88723 * 359.72407 * 18 17 16 28 28 C 1.38140 * 119.94329 * 0.02562 * 27 18 17 29 29 H 1.08993 * 109.47422 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46776 * 300.00369 * 1 2 3 31 31 H 1.09003 * 109.47006 * 59.99815 * 1 2 3 32 32 H 0.96990 * 120.00490 * 94.99152 * 4 2 1 33 33 H 0.97000 * 119.99610 * 180.02562 * 10 9 7 34 34 H 1.07996 * 119.97324 * 0.02562 * 16 15 2 35 35 H 1.07995 * 120.02987 * 180.27722 * 17 16 15 36 36 H 1.09000 * 109.46998 * 299.99806 * 20 19 18 37 37 H 1.09006 * 109.47303 * 60.00010 * 20 19 18 38 38 H 0.97002 * 120.00544 * 359.97438 * 23 21 20 39 39 H 1.09000 * 115.54708 * 9.41433 * 24 23 21 40 40 H 1.08998 * 117.49473 * 359.97438 * 25 24 23 41 41 H 1.08999 * 117.49552 * 145.01698 * 25 24 23 42 42 H 1.09001 * 117.50450 * 214.98050 * 26 24 23 43 43 H 1.09001 * 117.49903 * 359.97438 * 26 24 23 44 44 H 1.07994 * 120.02319 * 179.97438 * 27 18 17 45 45 H 1.07999 * 119.97136 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8573 1.1623 2.4119 7 6 2.6345 -0.7085 3.5524 8 1 2.8867 -1.7574 3.5051 9 6 2.7678 -0.0099 4.7589 10 7 2.4621 1.2593 4.8163 11 14 3.3826 -0.8925 6.2861 12 1 3.6571 -2.3148 5.9591 13 1 4.6302 -0.2443 6.7640 14 1 2.3486 -0.8202 7.3495 15 6 2.0323 -0.7105 -1.2305 16 6 2.0715 -2.0922 -1.2619 17 6 2.5261 -2.7460 -2.3908 18 6 2.9544 -2.0147 -3.4893 19 8 3.4069 -2.6554 -4.5990 20 6 3.4148 -4.0839 -4.5655 21 6 3.9440 -4.6142 -5.8732 22 8 4.2817 -3.8445 -6.7474 23 7 4.0420 -5.9437 -6.0709 24 6 4.5570 -6.4592 -7.3419 25 6 3.8174 -7.6379 -7.9779 26 6 5.1899 -7.8521 -7.3349 27 6 2.9194 -0.6282 -3.4530 28 6 2.4591 0.0206 -2.3237 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2489 -1.6318 1.1526 33 1 2.5547 1.7432 5.6518 34 1 1.7418 -2.6610 -0.4051 35 1 2.5523 -3.8253 -2.4166 36 1 4.0526 -4.4247 -3.7500 37 1 2.3996 -4.4493 -4.4099 38 1 3.7723 -6.5593 -5.3715 39 1 4.9871 -5.7144 -8.0115 40 1 2.9478 -8.0300 -7.4505 41 1 3.7611 -7.6687 -9.0660 42 1 6.0360 -8.0239 -8.0002 43 1 5.2235 -8.3849 -6.3845 44 1 3.2527 -0.0568 -4.3066 45 1 2.4313 1.0999 -2.2951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274582016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:43 Heat of formation + Delta-G solvation = -85.749897 kcal Electronic energy + Delta-G solvation = -26743.880347 eV Core-core repulsion = 22726.445608 eV Total energy + Delta-G solvation = -4017.434739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.53766 -40.71176 -39.69796 -38.50046 -37.88866 -35.69372 -34.48726 -34.06773 -32.11591 -31.92499 -30.19571 -28.86164 -28.15653 -24.61942 -24.20666 -23.27667 -23.03619 -22.22715 -21.71529 -20.97800 -19.60050 -19.16089 -18.33634 -17.65894 -17.43719 -17.38510 -16.90722 -16.54572 -15.92434 -15.71506 -15.57351 -15.42805 -15.09897 -15.06628 -14.83039 -14.38754 -14.23351 -14.12521 -13.70561 -13.66799 -13.40276 -13.31489 -13.04553 -12.74758 -12.62641 -12.56775 -12.52937 -12.37235 -12.00791 -11.92664 -11.87273 -11.75797 -11.48859 -11.03718 -10.92777 -9.96227 -9.84045 -9.82538 -9.46101 -9.08956 -8.26053 -6.82281 0.37723 0.40588 1.36893 1.41407 1.41572 1.44752 1.59247 2.26130 2.50688 2.58412 2.74762 2.96183 3.19157 3.50011 3.66065 3.78581 3.79868 3.85917 3.96403 4.02287 4.06368 4.07788 4.13033 4.38115 4.39395 4.48959 4.58235 4.67282 4.76729 4.77817 4.83519 4.98475 5.02733 5.11343 5.20890 5.21066 5.29086 5.34693 5.39606 5.41818 5.66718 5.73899 5.92227 6.27570 6.29291 6.34374 6.45681 6.89914 7.08950 7.59771 8.53661 8.71276 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017789 B = 0.001919 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.600642 B =14589.015178 C =15696.527327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.192 3.808 3 H 0.048 0.952 4 N -0.746 5.746 5 C 0.540 3.460 6 O -0.630 6.630 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.028 3.972 10 N -0.822 5.822 11 Si 0.997 3.003 12 H -0.245 1.245 13 H -0.271 1.271 14 H -0.270 1.270 15 C -0.124 4.124 16 C -0.074 4.074 17 C -0.194 4.194 18 C 0.117 3.883 19 O -0.316 6.316 20 C 0.036 3.964 21 C 0.518 3.482 22 O -0.572 6.572 23 N -0.682 5.682 24 C 0.049 3.951 25 C -0.183 4.183 26 C -0.171 4.171 27 C -0.154 4.154 28 C -0.078 4.078 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.393 0.607 33 H 0.273 0.727 34 H 0.138 0.862 35 H 0.166 0.834 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.422 0.578 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.136 0.864 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -22.438 -21.115 30.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.087 3.913 3 H 0.066 0.934 4 N -0.401 5.401 5 C 0.344 3.656 6 O -0.517 6.517 7 C -0.609 4.609 8 H 0.106 0.894 9 C -0.187 4.187 10 N -0.452 5.452 11 Si 0.816 3.184 12 H -0.168 1.168 13 H -0.196 1.196 14 H -0.194 1.194 15 C -0.125 4.125 16 C -0.092 4.092 17 C -0.212 4.212 18 C 0.072 3.928 19 O -0.229 6.229 20 C -0.042 4.042 21 C 0.304 3.696 22 O -0.450 6.450 23 N -0.335 5.335 24 C -0.057 4.057 25 C -0.221 4.221 26 C -0.209 4.209 27 C -0.173 4.173 28 C -0.096 4.096 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.183 0.817 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.260 0.740 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.154 0.846 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.009 -20.789 -21.796 30.188 hybrid contribution 0.119 -0.362 1.053 1.120 sum 2.128 -21.151 -20.743 29.701 Atomic orbital electron populations 1.22044 0.94968 1.02160 1.00950 1.19344 0.93812 0.95186 0.82966 0.93356 1.45943 1.72095 1.13262 1.08828 1.18585 0.77529 0.86065 0.83424 1.90551 1.56857 1.18558 1.85713 1.21460 1.47264 0.98186 0.94014 0.89422 1.26967 0.92833 0.95158 1.03756 1.70204 1.36793 1.10511 1.27667 0.84988 0.78072 0.79455 0.75870 1.16806 1.19599 1.19449 1.19917 1.02577 0.94829 0.95153 1.20917 0.97063 0.93114 0.98102 1.21437 1.05329 1.01529 0.92929 1.19057 0.95498 0.92125 0.86074 1.86097 1.80542 1.20145 1.36137 1.22719 1.05268 0.79921 0.96242 1.20491 0.77592 0.82799 0.88689 1.90741 1.49918 1.57948 1.46402 1.45030 1.65102 1.05737 1.17586 1.21634 1.04231 0.91604 0.88208 1.23529 0.96520 1.00466 1.01602 1.23496 0.97171 0.96259 1.03988 1.20490 1.05206 0.91852 0.99723 1.20921 0.96485 1.00421 0.91823 0.91390 0.95351 0.90746 0.77230 0.91704 0.84459 0.81680 0.85853 0.85566 0.73987 0.86826 0.87208 0.87540 0.87161 0.86769 0.84567 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.46 71.98 0.68 -4.39 16 2 C 0.19 7.49 2.78 44.24 0.12 7.61 16 3 H 0.05 2.21 7.43 -2.39 -0.02 2.19 16 4 N -0.75 -33.14 5.02 -450.39 -2.26 -35.40 16 5 C 0.54 31.18 7.71 86.36 0.67 31.85 16 6 O -0.63 -42.16 14.68 -4.29 -0.06 -42.22 16 7 C -0.57 -32.23 9.54 24.83 0.24 -31.99 16 8 H 0.09 4.39 7.85 -2.92 -0.02 4.37 16 9 C 0.03 1.54 5.50 85.31 0.47 2.01 16 10 N -0.82 -50.50 11.83 21.84 0.26 -50.24 16 11 Si 1.00 40.75 29.56 68.60 2.03 42.78 16 12 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 13 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 14 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 15 C -0.12 -3.79 4.96 -19.85 -0.10 -3.88 16 16 C -0.07 -1.83 9.05 22.26 0.20 -1.63 16 17 C -0.19 -3.86 9.04 22.37 0.20 -3.66 16 18 C 0.12 2.78 6.69 22.51 0.15 2.93 16 19 O -0.32 -7.40 9.67 -73.36 -0.71 -8.11 16 20 C 0.04 0.48 5.22 71.24 0.37 0.85 16 21 C 0.52 9.18 7.91 87.66 0.69 9.88 16 22 O -0.57 -16.65 16.07 16.01 0.26 -16.39 16 23 N -0.68 -6.81 5.57 -442.54 -2.46 -9.27 16 24 C 0.05 0.54 6.43 44.99 0.29 0.83 16 25 C -0.18 -1.17 10.46 30.62 0.32 -0.85 16 26 C -0.17 -0.95 10.46 30.62 0.32 -0.63 16 27 C -0.15 -4.01 9.99 22.37 0.22 -3.79 16 28 C -0.08 -2.21 9.66 22.25 0.21 -2.00 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.39 14.87 6.83 -92.72 -0.63 14.24 16 33 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 34 H 0.14 3.08 6.89 -2.91 -0.02 3.06 16 35 H 0.17 1.85 6.30 -2.91 -0.02 1.83 16 36 H 0.12 0.94 7.66 -2.39 -0.02 0.93 16 37 H 0.13 0.86 7.66 -2.38 -0.02 0.85 16 38 H 0.42 0.96 8.83 -92.71 -0.82 0.14 16 39 H 0.11 1.87 7.40 -2.39 -0.02 1.85 16 40 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 45 H 0.13 3.57 8.03 -2.91 -0.02 3.55 16 Total: -1.00 -87.81 386.79 1.70 -86.12 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.42 Total: 29.60 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 5.06 Total: 3.14 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -4.47 Total: -94.91 kcal Atomic # 8 Polarization: -66.20 SS G_CDS: -0.52 Total: -66.72 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -87.81 1.70 -86.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274582016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.367 kcal (2) G-P(sol) polarization free energy of solvation -87.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds