Wall clock time and date at job start Tue Mar 31 2020 18:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46694 * 2 1 4 4 N 1.46505 * 109.47012 * 240.00600 * 2 1 3 5 5 C 1.34775 * 120.00357 * 84.99734 * 4 2 1 6 6 O 1.21692 * 119.99588 * 0.02562 * 5 4 2 7 7 C 1.46371 * 120.00222 * 179.97438 * 5 4 2 8 8 H 1.07998 * 119.99923 * 359.97438 * 7 5 4 9 9 C 1.40050 * 120.00007 * 180.02562 * 7 5 4 10 10 N 1.30666 * 120.00015 * 359.97438 * 9 7 5 11 11 Si 1.86802 * 119.99803 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47308 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47086 * 119.99961 * 11 9 7 14 14 H 1.48505 * 109.46705 * 239.99784 * 11 9 7 15 15 C 1.50697 * 109.47417 * 120.00270 * 2 1 3 16 16 C 1.38270 * 119.94016 * 80.23344 * 15 2 1 17 17 C 1.38147 * 120.05177 * 180.28414 * 16 15 2 18 18 C 1.38736 * 119.94540 * 359.46077 * 17 16 15 19 19 O 1.35892 * 120.05957 * 180.26040 * 18 17 16 20 20 C 1.42899 * 117.00396 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47210 * 179.97438 * 20 19 18 22 22 O 1.21281 * 120.00226 * 0.02562 * 21 20 19 23 23 N 1.34779 * 119.99660 * 180.02562 * 21 20 19 24 24 C 1.46505 * 119.99925 * 180.02562 * 23 21 20 25 25 C 1.52993 * 117.49768 * 223.74300 * 24 23 21 26 26 C 1.52996 * 117.49824 * 155.08116 * 24 23 21 27 27 C 1.38740 * 119.88595 * 0.28283 * 18 17 16 28 28 C 1.38146 * 119.94197 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.47367 * 59.99646 * 1 2 3 30 30 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47333 * 299.99626 * 1 2 3 32 32 H 0.97001 * 119.99467 * 264.99758 * 4 2 1 33 33 H 0.97001 * 120.00132 * 180.02562 * 10 9 7 34 34 H 1.07995 * 119.98059 * 0.02562 * 16 15 2 35 35 H 1.08002 * 120.03108 * 179.74549 * 17 16 15 36 36 H 1.08997 * 109.47463 * 300.00468 * 20 19 18 37 37 H 1.09002 * 109.46662 * 59.99805 * 20 19 18 38 38 H 0.96996 * 120.00073 * 359.97438 * 23 21 20 39 39 H 1.09002 * 115.54740 * 9.41194 * 24 23 21 40 40 H 1.09003 * 117.50224 * 359.97438 * 25 24 23 41 41 H 1.09002 * 117.49824 * 145.01757 * 25 24 23 42 42 H 1.09004 * 117.49774 * 214.97168 * 26 24 23 43 43 H 1.08995 * 117.50480 * 359.97438 * 26 24 23 44 44 H 1.07993 * 120.02463 * 180.02562 * 27 18 17 45 45 H 1.08006 * 119.96944 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8580 1.1627 -2.4116 7 6 2.6354 -0.7079 -3.5523 8 1 2.8931 -1.7556 -3.5036 9 6 2.7696 -0.0090 -4.7585 10 7 2.4584 1.2587 -4.8172 11 14 3.3923 -0.8896 -6.2838 12 1 3.6724 -2.3104 -5.9554 13 1 2.3612 -0.8214 -7.3502 14 1 4.6389 -0.2365 -6.7580 15 6 2.0324 -0.7104 1.2304 16 6 2.0709 -2.0922 1.2620 17 6 2.5255 -2.7460 2.3909 18 6 2.9542 -2.0147 3.4893 19 8 3.4068 -2.6554 4.5989 20 6 3.8315 -1.8385 5.6918 21 6 4.2961 -2.7170 6.8247 22 8 4.2669 -3.9238 6.7076 23 7 4.7441 -2.1616 7.9681 24 6 5.1963 -3.0156 9.0692 25 6 4.7445 -2.6438 10.4829 26 6 6.1984 -2.4195 10.0598 27 6 2.9195 -0.6283 3.4529 28 6 2.4590 0.0206 2.3236 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.5510 1.7426 -5.6527 34 1 1.7413 -2.6610 0.4052 35 1 2.5515 -3.8254 2.4168 36 1 4.6515 -1.1972 5.3690 37 1 2.9987 -1.2213 6.0291 38 1 4.7678 -1.1964 8.0616 39 1 5.2913 -4.0755 8.8336 40 1 4.1112 -1.7637 10.5938 41 1 4.5427 -3.4593 11.1775 42 1 6.9524 -3.0874 10.4763 43 1 6.5216 -1.3921 9.8921 44 1 3.2531 -0.0568 4.3064 45 1 2.4315 1.0999 2.2950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274582019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:48 Heat of formation + Delta-G solvation = -58.895241 kcal Electronic energy + Delta-G solvation = -26679.415724 eV Core-core repulsion = 22663.145490 eV Total energy + Delta-G solvation = -4016.270234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.68828 -39.83120 -38.33256 -37.46449 -36.76897 -34.01182 -33.46518 -32.36278 -31.19833 -30.17941 -29.22167 -27.86609 -26.08377 -23.51495 -23.03922 -22.97258 -22.28920 -21.19895 -20.75736 -19.19936 -18.57895 -17.66816 -17.33861 -16.98305 -16.67157 -15.84934 -15.52366 -15.15100 -15.05974 -14.70523 -14.63351 -14.29339 -13.91821 -13.62828 -13.43257 -13.29065 -13.21985 -12.78536 -12.62567 -12.37226 -12.30789 -12.17430 -11.91428 -11.59297 -11.47244 -11.11607 -11.05995 -11.04481 -10.87786 -10.77526 -10.47684 -10.33414 -10.26385 -10.16089 -9.34221 -8.93932 -8.85015 -8.08044 -7.58018 -7.50676 -6.17177 -4.62338 1.39982 1.48056 2.03859 2.08313 3.14181 3.22622 3.27097 3.28410 3.33089 3.81609 4.10156 4.12672 4.17920 4.35356 4.41252 4.53671 4.60482 4.63941 4.78873 4.87573 4.95404 5.05110 5.11706 5.21020 5.34686 5.42628 5.47223 5.48786 5.69398 5.75450 5.89540 5.93381 6.05934 6.13669 6.17670 6.30631 6.42063 6.49571 6.72825 6.80225 6.87236 6.92750 7.30105 7.45218 7.67377 7.94614 8.12483 8.35344 9.04456 9.55016 10.61478 10.80285 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.001763 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.952425 B =15879.582892 C =16248.976275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.191 3.809 3 H 0.083 0.917 4 N -0.761 5.761 5 C 0.556 3.444 6 O -0.580 6.580 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.906 3.094 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.277 1.277 15 C -0.105 4.105 16 C -0.071 4.071 17 C -0.142 4.142 18 C 0.113 3.887 19 O -0.292 6.292 20 C 0.043 3.957 21 C 0.521 3.479 22 O -0.511 6.511 23 N -0.702 5.702 24 C 0.080 3.920 25 C -0.192 4.192 26 C -0.188 4.188 27 C -0.208 4.208 28 C -0.073 4.073 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.379 0.621 33 H 0.267 0.733 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.404 0.596 39 H 0.140 0.860 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.124 0.876 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -4.973 27.830 28.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.085 3.915 3 H 0.101 0.899 4 N -0.416 5.416 5 C 0.360 3.640 6 O -0.463 6.463 7 C -0.582 4.582 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.731 3.269 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.106 4.106 16 C -0.089 4.089 17 C -0.161 4.161 18 C 0.069 3.931 19 O -0.205 6.205 20 C -0.036 4.036 21 C 0.306 3.694 22 O -0.384 6.384 23 N -0.355 5.355 24 C -0.026 4.026 25 C -0.231 4.231 26 C -0.226 4.226 27 C -0.226 4.226 28 C -0.092 4.092 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.212 0.788 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.238 0.762 39 H 0.157 0.843 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.142 0.858 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.794 -5.024 27.569 28.279 hybrid contribution 0.502 -0.052 -0.490 0.704 sum 4.296 -5.076 27.079 27.884 Atomic orbital electron populations 1.22159 0.96014 1.01294 1.01629 1.19355 0.92974 0.96641 0.82535 0.89922 1.46297 1.73199 1.12837 1.09281 1.18211 0.77764 0.86398 0.81606 1.90592 1.54842 1.16372 1.84498 1.20926 1.46715 0.97210 0.93360 0.91426 1.25694 0.93325 0.94453 0.99682 1.70027 1.35342 1.08186 1.26121 0.86341 0.78776 0.80348 0.81441 1.18776 1.20190 1.20212 1.20236 1.00083 0.93879 0.96360 1.20854 0.97174 0.94017 0.96900 1.20390 1.03741 1.00247 0.91701 1.18952 0.96510 0.90972 0.86681 1.86120 1.78550 1.33894 1.21963 1.22347 1.01332 0.93199 0.86682 1.20141 0.77386 0.89043 0.82806 1.90764 1.52304 1.14605 1.80743 1.45188 1.66127 1.09913 1.14252 1.21615 1.01939 0.96437 0.82580 1.23462 0.97410 1.04250 0.97985 1.23412 0.93289 1.02876 1.03049 1.21113 1.08207 0.92807 1.00510 1.20832 0.96382 0.99971 0.92012 0.91534 0.93215 0.93240 0.78839 0.92220 0.84994 0.85153 0.88806 0.88879 0.76179 0.84275 0.88351 0.87803 0.87674 0.88294 0.85830 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.46 37.16 0.35 -2.32 16 2 C 0.19 3.63 2.78 -69.08 -0.19 3.43 16 3 H 0.08 1.75 7.43 -51.93 -0.39 1.37 16 4 N -0.76 -16.81 5.02 -56.34 -0.28 -17.09 16 5 C 0.56 15.64 7.71 -12.99 -0.10 15.54 16 6 O -0.58 -18.45 14.68 5.20 0.08 -18.38 16 7 C -0.55 -15.37 9.54 -35.63 -0.34 -15.71 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 10 N -0.77 -22.96 11.83 55.55 0.66 -22.31 16 11 Si 0.91 20.21 29.56 -169.99 -5.02 15.18 16 12 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 C -0.10 -1.63 4.96 -104.60 -0.52 -2.15 16 16 C -0.07 -1.02 9.05 -39.60 -0.36 -1.38 16 17 C -0.14 -1.93 9.99 -39.43 -0.39 -2.32 16 18 C 0.11 1.48 6.69 -39.21 -0.26 1.21 16 19 O -0.29 -3.73 9.67 -39.31 -0.38 -4.11 16 20 C 0.04 0.36 5.22 36.01 0.19 0.55 16 21 C 0.52 4.97 7.91 -10.98 -0.09 4.89 16 22 O -0.51 -7.33 16.07 -14.35 -0.23 -7.56 16 23 N -0.70 -4.19 5.57 -53.81 -0.30 -4.49 16 24 C 0.08 0.48 6.43 -67.93 -0.44 0.05 16 25 C -0.19 -0.81 10.46 -26.70 -0.28 -1.09 16 26 C -0.19 -0.73 10.46 -26.70 -0.28 -1.01 16 27 C -0.21 -2.43 9.04 -39.43 -0.36 -2.79 16 28 C -0.07 -0.99 9.66 -39.61 -0.38 -1.37 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.38 7.47 6.83 -40.82 -0.28 7.19 16 33 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 34 H 0.13 1.79 6.90 -52.49 -0.36 1.43 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.09 0.57 7.66 -51.93 -0.40 0.17 16 37 H 0.09 0.53 7.66 -51.93 -0.40 0.13 16 38 H 0.40 1.11 8.83 -40.82 -0.36 0.75 16 39 H 0.14 1.08 7.40 -51.93 -0.38 0.69 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.12 1.03 6.30 -52.49 -0.33 0.69 16 45 H 0.13 1.53 8.03 -52.48 -0.42 1.11 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -37.89 386.80 -9.44 -47.34 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.25 Total: 7.70 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.54 Total: -2.11 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.07 Total: -43.89 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.53 Total: -30.04 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.89 -9.44 -47.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274582019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.560 kcal (2) G-P(sol) polarization free energy of solvation -37.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds