Wall clock time and date at job start Tue Mar 31 2020 17:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47284 * 2 1 4 4 C 1.50704 * 109.46953 * 240.00136 * 2 1 3 5 5 H 1.08005 * 119.99934 * 239.99773 * 4 2 1 6 6 C 1.37870 * 120.00236 * 59.99904 * 4 2 1 7 7 N 1.31515 * 120.00092 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00222 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46953 * 60.00081 * 8 6 4 10 10 H 1.48506 * 109.47212 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47109 * 300.00194 * 8 6 4 12 12 N 1.46493 * 109.47420 * 120.00067 * 2 1 3 13 13 C 1.46504 * 119.99940 * 59.99615 * 12 2 1 14 14 C 1.34778 * 120.00309 * 239.99911 * 12 2 1 15 15 O 1.21365 * 119.99747 * 3.29869 * 14 12 2 16 16 C 1.49333 * 120.00176 * 183.29234 * 14 12 2 17 17 O 1.21390 * 119.99979 * 6.08911 * 16 14 12 18 18 N 1.34777 * 119.99955 * 185.81364 * 16 14 12 19 19 C 1.47302 * 121.14782 * 359.54726 * 18 16 14 20 20 C 1.53537 * 107.58451 * 138.01547 * 19 18 16 21 21 H 1.09000 * 109.58346 * 298.40837 * 20 19 18 22 22 C 1.52997 * 109.58185 * 177.99203 * 20 19 18 23 23 O 1.42959 * 108.78932 * 58.20048 * 20 19 18 24 24 C 1.35885 * 117.74836 * 310.58814 * 23 20 19 25 25 C 1.38711 * 119.65945 * 200.12215 * 24 23 20 26 26 C 1.38201 * 120.04875 * 180.15893 * 25 24 23 27 27 C 1.38297 * 120.31216 * 0.02901 * 26 25 24 28 28 C 1.38229 * 120.07341 * 359.91223 * 27 26 25 29 29 C 1.38758 * 119.84337 * 359.74199 * 28 27 26 30 30 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46851 * 299.99896 * 1 2 3 32 32 H 1.09000 * 109.46935 * 59.99945 * 1 2 3 33 33 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47093 * 263.86333 * 13 12 2 35 35 H 1.09004 * 109.47100 * 23.86800 * 13 12 2 36 36 H 1.09003 * 109.47123 * 143.86377 * 13 12 2 37 37 H 1.09001 * 109.83421 * 257.53405 * 19 18 16 38 38 H 1.08997 * 109.83325 * 18.49424 * 19 18 16 39 39 H 1.09008 * 109.47281 * 60.00167 * 22 20 19 40 40 H 1.09005 * 109.47295 * 179.97438 * 22 20 19 41 41 H 1.08994 * 109.47596 * 299.99757 * 22 20 19 42 42 H 1.07993 * 119.97131 * 0.13140 * 25 24 23 43 43 H 1.07997 * 119.84105 * 180.02562 * 26 25 24 44 44 H 1.07996 * 119.96243 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.06201 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5197 -4.0082 10 1 1.8278 -0.4192 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0833 15 8 3.0372 1.1423 1.9224 16 6 3.3516 -0.7593 3.2642 17 8 3.2008 -1.9593 3.3676 18 7 4.0278 -0.0809 4.2123 19 6 4.2395 1.3728 4.1043 20 6 4.0129 1.9793 5.4965 21 1 2.9871 1.7921 5.8140 22 6 4.2707 3.4866 5.4474 23 8 4.9189 1.3680 6.4180 24 6 4.9908 0.0111 6.4287 25 6 5.5060 -0.6403 7.5396 26 6 5.5860 -2.0199 7.5577 27 6 5.1545 -2.7584 6.4710 28 6 4.6384 -2.1186 5.3596 29 6 4.5493 -0.7340 5.3393 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.7089 1.1614 -3.4844 34 1 0.8000 -2.1451 2.0899 35 1 1.4233 -2.5690 0.4774 36 1 2.5067 -2.6090 1.8890 37 1 5.2585 1.5747 3.7743 38 1 3.5291 1.7983 3.3955 39 1 3.5873 3.9491 4.7351 40 1 4.1089 3.9153 6.4364 41 1 5.2989 3.6694 5.1355 42 1 5.8454 -0.0689 8.3909 43 1 5.9873 -2.5236 8.4246 44 1 5.2199 -3.8362 6.4910 45 1 4.3011 -2.6955 4.5112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276031407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:31 Heat of formation + Delta-G solvation = -32.108880 kcal Electronic energy + Delta-G solvation = -29471.779778 eV Core-core repulsion = 25456.671088 eV Total energy + Delta-G solvation = -4015.108690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63014 -39.92882 -38.34815 -37.58099 -36.35160 -35.02634 -32.87698 -32.70685 -30.59424 -29.62117 -29.16629 -27.04359 -26.11608 -25.36746 -24.84784 -23.19002 -22.84444 -21.06990 -20.17536 -19.07451 -18.27161 -17.49193 -16.99798 -16.48572 -16.32831 -15.95740 -15.84129 -15.45689 -15.11090 -14.66529 -14.36222 -14.10802 -13.97201 -13.79729 -13.34135 -13.18926 -13.04185 -12.66032 -12.59839 -12.51282 -12.23934 -12.05421 -11.88105 -11.69962 -11.49085 -11.22581 -11.08104 -11.00228 -10.92960 -10.79171 -10.37590 -10.28282 -10.24901 -10.06903 -9.32945 -8.69432 -8.55436 -8.45576 -7.97268 -7.78015 -6.18905 -4.27770 1.03057 1.33225 1.85340 2.32024 3.05957 3.23190 3.28144 3.30136 3.44367 3.65989 3.79276 4.28310 4.34344 4.50765 4.71267 4.78080 4.81961 4.98611 5.13067 5.17356 5.26735 5.36294 5.42186 5.47615 5.54136 5.77153 5.89766 5.91480 6.02256 6.04886 6.10870 6.20008 6.34178 6.46078 6.54654 6.62500 6.67393 6.78673 6.88011 7.01920 7.11899 7.28003 7.31552 7.57849 7.72010 7.88182 7.99771 8.23467 8.45134 8.76721 9.38834 10.86536 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.003315 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.732629 B = 8443.553622 C = 9348.464618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.254 3.746 3 H 0.068 0.932 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.543 5.543 13 C 0.055 3.945 14 C 0.497 3.503 15 O -0.530 6.530 16 C 0.513 3.487 17 O -0.496 6.496 18 N -0.530 5.530 19 C 0.034 3.966 20 C 0.073 3.927 21 H 0.076 0.924 22 C -0.141 4.141 23 O -0.314 6.314 24 C 0.100 3.900 25 C -0.133 4.133 26 C -0.109 4.109 27 C -0.133 4.133 28 C -0.118 4.118 29 C 0.076 3.924 30 H 0.033 0.967 31 H 0.013 0.987 32 H 0.097 0.903 33 H 0.266 0.734 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.167 0.833 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.640 -1.089 17.695 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.085 0.915 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.272 5.272 13 C -0.087 4.087 14 C 0.278 3.722 15 O -0.412 6.412 16 C 0.299 3.701 17 O -0.372 6.372 18 N -0.254 5.254 19 C -0.086 4.086 20 C 0.017 3.983 21 H 0.094 0.906 22 C -0.199 4.199 23 O -0.229 6.229 24 C 0.053 3.947 25 C -0.152 4.152 26 C -0.128 4.128 27 C -0.152 4.152 28 C -0.137 4.137 29 C -0.019 4.019 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.184 0.816 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.607 -0.841 17.477 18.373 hybrid contribution 0.228 -0.568 -0.930 1.113 sum 5.835 -1.410 16.547 17.602 Atomic orbital electron populations 1.22094 0.97435 0.99893 1.01095 1.19221 0.91446 0.94586 0.79248 0.91469 1.21234 1.32462 1.13361 0.89954 0.91969 1.24873 0.94742 0.94923 0.99000 1.69855 1.35968 1.22421 1.24159 0.86493 0.79298 0.79631 0.81654 1.20072 1.21070 1.20137 1.48312 1.44468 1.12753 1.21635 1.22397 1.01951 0.81910 1.02459 1.19498 0.81705 0.87043 0.83937 1.90404 1.60897 1.15275 1.74595 1.20890 0.78084 0.87216 0.83898 1.90402 1.57126 1.14325 1.75356 1.45576 1.50874 1.09789 1.19202 1.23992 1.07135 0.77919 0.99600 1.22924 0.92785 0.94511 0.88106 0.90606 1.21740 1.03755 0.90921 1.03472 1.86004 1.60827 1.16441 1.59580 1.18562 1.00889 0.82320 0.92897 1.20372 1.04321 0.94199 0.96305 1.20939 1.00148 0.92805 0.98876 1.21076 1.00453 1.00078 0.93565 1.22079 0.98489 0.92202 1.00937 1.18142 1.03425 0.92877 0.87409 0.94774 0.96810 0.88419 0.92426 0.93563 0.90113 0.88171 0.89586 0.81646 0.89496 0.91105 0.91126 0.85011 0.85524 0.85539 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.97 37.16 0.33 -3.04 16 2 C 0.25 6.21 2.63 -69.08 -0.18 6.03 16 3 H 0.07 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -13.90 7.95 -34.44 -0.27 -14.17 16 5 H 0.06 1.61 7.44 -52.48 -0.39 1.22 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.07 11.32 55.43 0.63 -23.45 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.54 -11.51 2.75 -175.81 -0.48 -12.00 16 13 C 0.06 1.01 8.68 59.85 0.52 1.53 16 14 C 0.50 10.02 7.65 -11.64 -0.09 9.94 16 15 O -0.53 -11.26 12.42 5.48 0.07 -11.19 16 16 C 0.51 9.14 7.60 -11.64 -0.09 9.05 16 17 O -0.50 -8.79 9.82 5.46 0.05 -8.74 16 18 N -0.53 -8.55 3.01 -112.89 -0.34 -8.89 16 19 C 0.03 0.49 5.44 -3.33 -0.02 0.47 16 20 C 0.07 0.89 3.58 -26.45 -0.09 0.79 16 21 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 22 C -0.14 -1.29 9.58 37.16 0.36 -0.94 16 23 O -0.31 -4.22 9.97 -19.38 -0.19 -4.41 16 24 C 0.10 1.40 6.51 -39.06 -0.25 1.15 16 25 C -0.13 -1.54 9.97 -39.42 -0.39 -1.94 16 26 C -0.11 -1.14 10.03 -39.57 -0.40 -1.53 16 27 C -0.13 -1.54 10.04 -39.56 -0.40 -1.94 16 28 C -0.12 -1.69 9.00 -39.39 -0.35 -2.05 16 29 C 0.08 1.16 6.33 -83.44 -0.53 0.63 16 30 H 0.03 0.73 7.67 -51.93 -0.40 0.34 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.51 7.12 -51.93 -0.37 1.14 16 36 H 0.10 1.77 5.05 -51.89 -0.26 1.51 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.17 2.59 4.49 -54.41 -0.24 2.34 16 39 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 45 H 0.17 2.63 4.98 -52.63 -0.26 2.37 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -28.68 358.62 -7.80 -36.48 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.96 Total: 5.65 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -1.96 Total: 5.67 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.20 Total: -44.33 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.07 Total: -24.34 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.68 -7.80 -36.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276031407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.373 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds