Wall clock time and date at job start Tue Mar 31 2020 17:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47284 * 2 1 4 4 C 1.50704 * 109.46953 * 240.00136 * 2 1 3 5 5 H 1.08005 * 119.99934 * 239.99773 * 4 2 1 6 6 C 1.37870 * 120.00236 * 59.99904 * 4 2 1 7 7 N 1.31515 * 120.00092 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00222 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46953 * 60.00081 * 8 6 4 10 10 H 1.48506 * 109.47212 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47109 * 300.00194 * 8 6 4 12 12 N 1.46493 * 109.47420 * 120.00067 * 2 1 3 13 13 C 1.46504 * 119.99940 * 59.99615 * 12 2 1 14 14 C 1.34778 * 120.00309 * 239.99911 * 12 2 1 15 15 O 1.21365 * 119.99747 * 3.29869 * 14 12 2 16 16 C 1.49333 * 120.00176 * 183.29234 * 14 12 2 17 17 O 1.21390 * 119.99979 * 6.08911 * 16 14 12 18 18 N 1.34777 * 119.99955 * 185.81364 * 16 14 12 19 19 C 1.47302 * 121.14782 * 359.54726 * 18 16 14 20 20 C 1.53537 * 107.58451 * 138.01547 * 19 18 16 21 21 H 1.09000 * 109.58346 * 298.40837 * 20 19 18 22 22 C 1.52997 * 109.58185 * 177.99203 * 20 19 18 23 23 O 1.42959 * 108.78932 * 58.20048 * 20 19 18 24 24 C 1.35885 * 117.74836 * 310.58814 * 23 20 19 25 25 C 1.38711 * 119.65945 * 200.12215 * 24 23 20 26 26 C 1.38201 * 120.04875 * 180.15893 * 25 24 23 27 27 C 1.38297 * 120.31216 * 0.02901 * 26 25 24 28 28 C 1.38229 * 120.07341 * 359.91223 * 27 26 25 29 29 C 1.38758 * 119.84337 * 359.74199 * 28 27 26 30 30 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46851 * 299.99896 * 1 2 3 32 32 H 1.09000 * 109.46935 * 59.99945 * 1 2 3 33 33 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47093 * 263.86333 * 13 12 2 35 35 H 1.09004 * 109.47100 * 23.86800 * 13 12 2 36 36 H 1.09003 * 109.47123 * 143.86377 * 13 12 2 37 37 H 1.09001 * 109.83421 * 257.53405 * 19 18 16 38 38 H 1.08997 * 109.83325 * 18.49424 * 19 18 16 39 39 H 1.09008 * 109.47281 * 60.00167 * 22 20 19 40 40 H 1.09005 * 109.47295 * 179.97438 * 22 20 19 41 41 H 1.08994 * 109.47596 * 299.99757 * 22 20 19 42 42 H 1.07993 * 119.97131 * 0.13140 * 25 24 23 43 43 H 1.07997 * 119.84105 * 180.02562 * 26 25 24 44 44 H 1.07996 * 119.96243 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.06201 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5197 -4.0082 10 1 1.8278 -0.4192 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0833 15 8 3.0372 1.1423 1.9224 16 6 3.3516 -0.7593 3.2642 17 8 3.2008 -1.9593 3.3676 18 7 4.0278 -0.0809 4.2123 19 6 4.2395 1.3728 4.1043 20 6 4.0129 1.9793 5.4965 21 1 2.9871 1.7921 5.8140 22 6 4.2707 3.4866 5.4474 23 8 4.9189 1.3680 6.4180 24 6 4.9908 0.0111 6.4287 25 6 5.5060 -0.6403 7.5396 26 6 5.5860 -2.0199 7.5577 27 6 5.1545 -2.7584 6.4710 28 6 4.6384 -2.1186 5.3596 29 6 4.5493 -0.7340 5.3393 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.7089 1.1614 -3.4844 34 1 0.8000 -2.1451 2.0899 35 1 1.4233 -2.5690 0.4774 36 1 2.5067 -2.6090 1.8890 37 1 5.2585 1.5747 3.7743 38 1 3.5291 1.7983 3.3955 39 1 3.5873 3.9491 4.7351 40 1 4.1089 3.9153 6.4364 41 1 5.2989 3.6694 5.1355 42 1 5.8454 -0.0689 8.3909 43 1 5.9873 -2.5236 8.4246 44 1 5.2199 -3.8362 6.4910 45 1 4.3011 -2.6955 4.5112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276031407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:30 Heat of formation + Delta-G solvation = -48.125565 kcal Electronic energy + Delta-G solvation = -29472.474314 eV Core-core repulsion = 25456.671088 eV Total energy + Delta-G solvation = -4015.803226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.85174 -41.24894 -39.74677 -38.61489 -37.86229 -36.47452 -34.75426 -33.64805 -31.71143 -31.35587 -30.20905 -28.28894 -27.49051 -27.34948 -26.21514 -24.40597 -23.81423 -22.52571 -21.38232 -20.56285 -19.34835 -18.75132 -18.54614 -18.12183 -17.77094 -17.32345 -17.13541 -16.88772 -16.35998 -16.13366 -15.72109 -15.32122 -15.15769 -14.90627 -14.77891 -14.49571 -14.30761 -14.08193 -14.04050 -13.59029 -13.45624 -13.38470 -13.13959 -13.02521 -12.82777 -12.77889 -12.69838 -12.52711 -12.27509 -12.20040 -12.08804 -11.97917 -11.57497 -11.26238 -11.24697 -10.58105 -10.06216 -9.56497 -9.53394 -8.95054 -8.19587 -6.35904 -0.16882 0.36172 0.59087 0.99748 1.42514 1.43578 1.51374 1.96349 2.03891 2.27129 2.41836 2.78749 2.97687 3.09655 3.33268 3.67259 3.78705 3.87880 4.10699 4.24040 4.29357 4.35191 4.44519 4.47092 4.59488 4.65581 4.69035 4.71780 4.82803 4.85864 4.92882 4.96821 5.01636 5.06083 5.18682 5.27297 5.34971 5.37228 5.44696 5.55520 5.59361 5.75682 5.85600 5.89340 6.06760 6.24206 6.35717 6.55528 6.67809 6.89502 7.34691 8.84937 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.003315 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.732629 B = 8443.553622 C = 9348.464618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.260 3.740 3 H 0.028 0.972 4 C -0.546 4.546 5 H 0.059 0.941 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.277 1.277 12 N -0.554 5.554 13 C 0.061 3.939 14 C 0.491 3.509 15 O -0.548 6.548 16 C 0.514 3.486 17 O -0.500 6.500 18 N -0.527 5.527 19 C 0.033 3.967 20 C 0.077 3.923 21 H 0.074 0.926 22 C -0.136 4.136 23 O -0.316 6.316 24 C 0.085 3.915 25 C -0.132 4.132 26 C -0.093 4.093 27 C -0.131 4.131 28 C -0.135 4.135 29 C 0.044 3.956 30 H 0.044 0.956 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.267 0.733 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.152 0.848 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.152 0.848 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 -2.230 19.856 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.046 0.954 4 C -0.585 4.585 5 H 0.077 0.923 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.788 3.212 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.203 1.203 12 N -0.283 5.283 13 C -0.081 4.081 14 C 0.273 3.727 15 O -0.430 6.430 16 C 0.300 3.700 17 O -0.377 6.377 18 N -0.251 5.251 19 C -0.087 4.087 20 C 0.021 3.979 21 H 0.092 0.908 22 C -0.193 4.193 23 O -0.231 6.231 24 C 0.039 3.961 25 C -0.151 4.151 26 C -0.112 4.112 27 C -0.150 4.150 28 C -0.155 4.155 29 C -0.049 4.049 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.168 0.832 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.174 0.826 43 H 0.184 0.816 44 H 0.170 0.830 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.689 -1.989 19.680 20.880 hybrid contribution -0.028 -0.210 -1.460 1.475 sum 6.660 -2.199 18.220 19.524 Atomic orbital electron populations 1.21897 0.96448 1.00332 1.00534 1.18858 0.92137 0.92772 0.80311 0.95379 1.21473 1.32615 1.13412 0.90967 0.92266 1.25635 0.94851 0.95549 1.01701 1.69975 1.36732 1.23478 1.24786 0.85533 0.78458 0.78963 0.78239 1.19005 1.20604 1.20270 1.48258 1.45145 1.13748 1.21135 1.22462 1.02880 0.80274 1.02436 1.19976 0.81172 0.86993 0.84532 1.90413 1.61180 1.16140 1.75275 1.20275 0.78921 0.87074 0.83756 1.90398 1.57714 1.14064 1.75490 1.45540 1.50096 1.10355 1.19110 1.23966 1.06483 0.77305 1.00988 1.23002 0.92663 0.95920 0.86343 0.90787 1.21766 1.04166 0.88708 1.04705 1.86002 1.61105 1.16392 1.59624 1.18901 1.01421 0.82517 0.93311 1.20797 1.03146 0.95031 0.96089 1.21406 0.98031 0.92342 0.99402 1.21407 0.99250 1.01515 0.92788 1.22064 0.99756 0.91941 1.01738 1.18397 1.05381 0.93549 0.87587 0.93698 0.95642 0.90601 0.92338 0.91982 0.90730 0.87462 0.89632 0.83166 0.88776 0.89459 0.90809 0.82573 0.81553 0.83009 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.97 71.98 0.65 -5.62 16 2 C 0.26 13.12 2.63 44.25 0.12 13.24 16 3 H 0.03 1.63 6.90 -2.38 -0.02 1.62 16 4 C -0.55 -29.15 7.95 25.60 0.20 -28.95 16 5 H 0.06 3.12 7.44 -2.91 -0.02 3.10 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -50.52 11.32 21.44 0.24 -50.27 16 8 Si 0.96 42.19 29.54 68.60 2.03 44.21 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 12 N -0.55 -24.13 2.75 -828.50 -2.28 -26.41 16 13 C 0.06 2.25 8.68 127.77 1.11 3.36 16 14 C 0.49 20.55 7.65 87.23 0.67 21.21 16 15 O -0.55 -24.45 12.42 -3.29 -0.04 -24.49 16 16 C 0.51 18.81 7.60 87.23 0.66 19.48 16 17 O -0.50 -17.97 9.82 -3.37 -0.03 -18.00 16 18 N -0.53 -17.32 3.01 -629.41 -1.89 -19.21 16 19 C 0.03 0.97 5.44 86.41 0.47 1.44 16 20 C 0.08 1.84 3.58 30.77 0.11 1.95 16 21 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 22 C -0.14 -2.34 9.58 71.98 0.69 -1.65 16 23 O -0.32 -8.09 9.97 -92.25 -0.92 -9.01 16 24 C 0.09 2.26 6.51 22.61 0.15 2.41 16 25 C -0.13 -2.64 9.97 22.37 0.22 -2.42 16 26 C -0.09 -1.58 10.03 22.28 0.22 -1.35 16 27 C -0.13 -2.68 10.04 22.28 0.22 -2.46 16 28 C -0.14 -3.80 9.00 22.39 0.20 -3.60 16 29 C 0.04 1.33 6.33 38.13 0.24 1.57 16 30 H 0.04 1.95 7.67 -2.39 -0.02 1.93 16 31 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.08 3.91 6.07 -2.39 -0.01 3.89 16 33 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 2.81 7.12 -2.38 -0.02 2.79 16 36 H 0.11 3.81 5.05 -10.74 -0.05 3.76 16 37 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.15 4.93 4.49 -41.58 -0.19 4.75 16 39 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 44 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.15 4.77 4.98 -14.22 -0.07 4.70 16 Total: -1.00 -63.20 358.62 4.23 -58.97 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.74 Total: 23.91 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 6.38 Total: 20.30 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -3.93 Total: -95.90 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.99 Total: -51.50 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -63.20 4.23 -58.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276031407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.849 kcal (2) G-P(sol) polarization free energy of solvation -63.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds