Wall clock time and date at job start Tue Mar 31 2020 17:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46902 * 2 1 4 4 C 1.50692 * 109.47623 * 120.00323 * 2 1 3 5 5 H 1.07998 * 120.00252 * 119.99921 * 4 2 1 6 6 C 1.37880 * 120.00130 * 300.00620 * 4 2 1 7 7 N 1.31515 * 119.99579 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00291 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46907 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47260 * 119.99587 * 8 6 4 11 11 H 1.48505 * 109.46840 * 239.99684 * 8 6 4 12 12 N 1.46501 * 109.47364 * 240.00492 * 2 1 3 13 13 C 1.46504 * 120.00189 * 300.00157 * 12 2 1 14 14 C 1.34780 * 120.00254 * 119.99433 * 12 2 1 15 15 O 1.21363 * 119.99759 * 359.24375 * 14 12 2 16 16 C 1.49330 * 120.00017 * 179.24240 * 14 12 2 17 17 O 1.21382 * 120.00258 * 353.83197 * 16 14 12 18 18 N 1.34782 * 119.99803 * 173.82557 * 16 14 12 19 19 C 1.47297 * 121.14307 * 353.22317 * 18 16 14 20 20 C 1.53535 * 107.59266 * 222.01757 * 19 18 16 21 21 H 1.08997 * 109.58308 * 61.65571 * 20 19 18 22 22 C 1.52996 * 109.58203 * 181.92874 * 20 19 18 23 23 O 1.43002 * 108.76512 * 301.82013 * 20 19 18 24 24 C 1.35884 * 117.71896 * 49.56270 * 23 20 19 25 25 C 1.38708 * 119.66822 * 159.74478 * 24 23 20 26 26 C 1.38204 * 120.04999 * 179.60299 * 25 24 23 27 27 C 1.38307 * 120.30881 * 0.02562 * 26 25 24 28 28 C 1.38228 * 120.07216 * 0.03557 * 27 26 25 29 29 C 1.38651 * 119.87202 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46537 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47092 * 299.99310 * 1 2 3 32 32 H 1.08997 * 109.47692 * 60.00004 * 1 2 3 33 33 H 0.97002 * 119.99788 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46471 * 263.77504 * 13 12 2 35 35 H 1.09002 * 109.46881 * 23.76706 * 13 12 2 36 36 H 1.08989 * 109.47287 * 143.76713 * 13 12 2 37 37 H 1.08994 * 109.83280 * 341.54152 * 19 18 16 38 38 H 1.09004 * 109.83053 * 102.43402 * 19 18 16 39 39 H 1.09002 * 109.47063 * 59.99724 * 22 20 19 40 40 H 1.09004 * 109.47589 * 180.02562 * 22 20 19 41 41 H 1.09003 * 109.47294 * 300.00111 * 22 20 19 42 42 H 1.07993 * 119.97592 * 359.58333 * 25 24 23 43 43 H 1.07998 * 119.84382 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.96122 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.06076 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8299 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.1457 -2.2878 3.6035 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8159 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4283 14 6 2.7932 -0.0354 -2.0834 15 8 3.0749 1.1305 -1.8983 16 6 3.3049 -0.7441 -3.2941 17 8 3.1181 -1.9365 -3.4237 18 7 3.9742 -0.0598 -4.2430 19 6 4.0878 1.4077 -4.1866 20 6 3.8786 1.9444 -5.6097 21 1 2.8800 1.6794 -5.9570 22 6 4.0352 3.4663 -5.6120 23 8 4.8581 1.3582 -6.4711 24 6 5.0139 0.0091 -6.4251 25 6 5.6110 -0.6497 -7.4897 26 6 5.7807 -2.0207 -7.4478 27 6 5.3571 -2.7431 -6.3471 28 6 4.7598 -2.0957 -5.2818 29 6 4.5857 -0.7207 -5.3189 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.7094 1.1615 3.4844 34 1 2.4693 -2.7349 -1.0698 35 1 0.7453 -2.3293 -0.8921 36 1 1.5155 -2.2585 -2.4952 37 1 3.3240 1.8125 -3.5226 38 1 5.0775 1.6884 -3.8262 39 1 5.0360 3.7291 -5.2690 40 1 3.8859 3.8456 -6.6230 41 1 3.2949 3.9088 -4.9454 42 1 5.9431 -0.0911 -8.3522 43 1 6.2457 -2.5303 -8.2787 44 1 5.4929 -3.8141 -6.3200 45 1 4.4294 -2.6600 -4.4222 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276031409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:35 Heat of formation + Delta-G solvation = -39.619906 kcal Electronic energy + Delta-G solvation = -29457.073727 eV Core-core repulsion = 25441.639334 eV Total energy + Delta-G solvation = -4015.434393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61417 -39.91036 -38.31252 -37.59614 -36.31416 -35.03425 -32.87992 -32.71867 -30.60717 -29.62387 -29.16649 -27.01355 -26.16947 -25.36802 -24.84938 -23.17645 -22.84690 -21.05738 -20.17596 -18.97800 -18.29440 -17.47277 -16.96833 -16.54845 -16.34045 -15.99818 -15.77515 -15.41294 -15.11964 -14.64095 -14.25945 -14.15369 -13.97873 -13.83074 -13.33388 -13.20727 -12.97916 -12.71642 -12.66866 -12.46027 -12.25086 -11.97712 -11.85185 -11.69294 -11.53289 -11.18324 -11.11217 -11.02081 -10.90229 -10.80465 -10.45467 -10.32604 -10.26103 -10.12676 -9.30960 -8.77951 -8.55378 -8.46347 -7.97709 -7.78006 -6.18500 -4.26915 1.03083 1.32169 1.86759 2.32575 3.04581 3.21074 3.29335 3.32798 3.43575 3.68773 3.77873 4.29084 4.33526 4.51910 4.69518 4.76797 4.79767 4.97725 5.13644 5.16608 5.25498 5.33420 5.40958 5.46524 5.52477 5.75890 5.85835 5.90128 5.94637 6.01688 6.13904 6.19373 6.34748 6.43132 6.48575 6.61996 6.65730 6.75570 6.87001 6.99302 7.12378 7.24701 7.29676 7.58337 7.70144 7.88636 7.99780 8.24161 8.46755 8.78163 9.39845 10.86971 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.003311 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.150443 B = 8454.963088 C = 9360.198194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.254 3.746 3 H 0.068 0.932 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.546 5.546 13 C 0.078 3.922 14 C 0.495 3.505 15 O -0.531 6.531 16 C 0.510 3.490 17 O -0.495 6.495 18 N -0.534 5.534 19 C 0.052 3.948 20 C 0.072 3.928 21 H 0.076 0.924 22 C -0.142 4.142 23 O -0.313 6.313 24 C 0.099 3.901 25 C -0.131 4.131 26 C -0.109 4.109 27 C -0.131 4.131 28 C -0.113 4.113 29 C 0.080 3.920 30 H 0.034 0.966 31 H 0.098 0.902 32 H 0.013 0.987 33 H 0.264 0.736 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.151 0.849 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.348 -0.989 -18.120 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.086 0.914 4 C -0.567 4.567 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.275 5.275 13 C -0.065 4.065 14 C 0.276 3.724 15 O -0.412 6.412 16 C 0.296 3.704 17 O -0.370 6.370 18 N -0.259 5.259 19 C -0.069 4.069 20 C 0.015 3.985 21 H 0.094 0.906 22 C -0.199 4.199 23 O -0.227 6.227 24 C 0.052 3.948 25 C -0.151 4.151 26 C -0.128 4.128 27 C -0.150 4.150 28 C -0.133 4.133 29 C -0.015 4.015 30 H 0.053 0.947 31 H 0.116 0.884 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.169 0.831 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.308 -0.751 -17.912 18.697 hybrid contribution 0.272 -0.594 1.033 1.222 sum 5.580 -1.345 -16.879 17.829 Atomic orbital electron populations 1.22117 0.97466 0.99874 1.01181 1.19221 0.91382 0.94611 0.79309 0.91431 1.21307 1.32236 1.13247 0.89933 0.91950 1.24881 0.94779 0.94939 0.99024 1.69876 1.36162 1.22509 1.23912 0.86386 0.78670 0.79627 0.82442 1.19704 1.20810 1.20806 1.48322 1.44742 1.12700 1.21764 1.22045 1.01227 0.81277 1.01992 1.19519 0.81783 0.87008 0.84070 1.90547 1.59142 1.16000 1.75524 1.20886 0.78250 0.87158 0.84108 1.90547 1.54016 1.14978 1.77466 1.45544 1.49732 1.08530 1.22085 1.23589 1.07481 0.77535 0.98305 1.22938 0.91311 0.95108 0.89113 0.90605 1.21743 1.03963 0.90688 1.03515 1.86018 1.57146 1.17449 1.62113 1.18573 1.00857 0.82665 0.92728 1.20374 1.03562 0.94130 0.96985 1.20933 1.00240 0.92932 0.98714 1.21049 1.00009 1.00113 0.93817 1.21768 0.98399 0.92213 1.00892 1.18092 1.02064 0.93104 0.88194 0.94697 0.88353 0.96747 0.92566 0.92609 0.90872 0.90241 0.83146 0.89361 0.91062 0.91063 0.89546 0.84984 0.85479 0.85514 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.96 37.16 0.33 -3.05 16 2 C 0.25 6.21 2.62 -69.09 -0.18 6.03 16 3 H 0.07 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -13.92 8.37 -34.44 -0.29 -14.21 16 5 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.14 11.32 55.43 0.63 -23.51 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.55 -11.61 2.75 -175.82 -0.48 -12.10 16 13 C 0.08 1.42 8.55 59.85 0.51 1.93 16 14 C 0.49 10.05 7.59 -11.64 -0.09 9.96 16 15 O -0.53 -11.42 12.60 5.49 0.07 -11.35 16 16 C 0.51 9.13 7.49 -11.64 -0.09 9.04 16 17 O -0.50 -8.86 10.15 5.47 0.06 -8.81 16 18 N -0.53 -8.60 3.01 -112.90 -0.34 -8.94 16 19 C 0.05 0.74 5.19 -3.33 -0.02 0.72 16 20 C 0.07 0.86 3.58 -26.46 -0.09 0.76 16 21 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 22 C -0.14 -1.26 9.58 37.16 0.36 -0.91 16 23 O -0.31 -4.15 9.98 -19.37 -0.19 -4.34 16 24 C 0.10 1.37 6.51 -39.02 -0.25 1.11 16 25 C -0.13 -1.51 9.97 -39.42 -0.39 -1.90 16 26 C -0.11 -1.13 10.03 -39.57 -0.40 -1.53 16 27 C -0.13 -1.52 10.05 -39.56 -0.40 -1.92 16 28 C -0.11 -1.63 8.92 -39.43 -0.35 -1.98 16 29 C 0.08 1.21 6.32 -83.44 -0.53 0.69 16 30 H 0.03 0.74 6.67 -51.93 -0.35 0.40 16 31 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.31 6.44 -51.93 -0.33 0.97 16 36 H 0.08 1.35 5.69 -51.94 -0.30 1.06 16 37 H 0.15 2.31 4.98 -52.15 -0.26 2.05 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.16 2.54 5.20 -52.52 -0.27 2.27 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -29.10 358.79 -7.80 -36.90 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.95 Total: 4.72 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -1.97 Total: 6.42 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.20 Total: -44.55 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.07 Total: -24.50 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.10 -7.80 -36.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276031409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.721 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds