Wall clock time and date at job start Tue Mar 31 2020 17:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46902 * 2 1 4 4 C 1.50692 * 109.47623 * 120.00323 * 2 1 3 5 5 H 1.07998 * 120.00252 * 119.99921 * 4 2 1 6 6 C 1.37880 * 120.00130 * 300.00620 * 4 2 1 7 7 N 1.31515 * 119.99579 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00291 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46907 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47260 * 119.99587 * 8 6 4 11 11 H 1.48505 * 109.46840 * 239.99684 * 8 6 4 12 12 N 1.46501 * 109.47364 * 240.00492 * 2 1 3 13 13 C 1.46504 * 120.00189 * 300.00157 * 12 2 1 14 14 C 1.34780 * 120.00254 * 119.99433 * 12 2 1 15 15 O 1.21363 * 119.99759 * 359.24375 * 14 12 2 16 16 C 1.49330 * 120.00017 * 179.24240 * 14 12 2 17 17 O 1.21382 * 120.00258 * 353.83197 * 16 14 12 18 18 N 1.34782 * 119.99803 * 173.82557 * 16 14 12 19 19 C 1.47297 * 121.14307 * 353.22317 * 18 16 14 20 20 C 1.53535 * 107.59266 * 222.01757 * 19 18 16 21 21 H 1.08997 * 109.58308 * 61.65571 * 20 19 18 22 22 C 1.52996 * 109.58203 * 181.92874 * 20 19 18 23 23 O 1.43002 * 108.76512 * 301.82013 * 20 19 18 24 24 C 1.35884 * 117.71896 * 49.56270 * 23 20 19 25 25 C 1.38708 * 119.66822 * 159.74478 * 24 23 20 26 26 C 1.38204 * 120.04999 * 179.60299 * 25 24 23 27 27 C 1.38307 * 120.30881 * 0.02562 * 26 25 24 28 28 C 1.38228 * 120.07216 * 0.03557 * 27 26 25 29 29 C 1.38651 * 119.87202 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46537 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47092 * 299.99310 * 1 2 3 32 32 H 1.08997 * 109.47692 * 60.00004 * 1 2 3 33 33 H 0.97002 * 119.99788 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46471 * 263.77504 * 13 12 2 35 35 H 1.09002 * 109.46881 * 23.76706 * 13 12 2 36 36 H 1.08989 * 109.47287 * 143.76713 * 13 12 2 37 37 H 1.08994 * 109.83280 * 341.54152 * 19 18 16 38 38 H 1.09004 * 109.83053 * 102.43402 * 19 18 16 39 39 H 1.09002 * 109.47063 * 59.99724 * 22 20 19 40 40 H 1.09004 * 109.47589 * 180.02562 * 22 20 19 41 41 H 1.09003 * 109.47294 * 300.00111 * 22 20 19 42 42 H 1.07993 * 119.97592 * 359.58333 * 25 24 23 43 43 H 1.07998 * 119.84382 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.96122 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.06076 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8299 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.1457 -2.2878 3.6035 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8159 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4283 14 6 2.7932 -0.0354 -2.0834 15 8 3.0749 1.1305 -1.8983 16 6 3.3049 -0.7441 -3.2941 17 8 3.1181 -1.9365 -3.4237 18 7 3.9742 -0.0598 -4.2430 19 6 4.0878 1.4077 -4.1866 20 6 3.8786 1.9444 -5.6097 21 1 2.8800 1.6794 -5.9570 22 6 4.0352 3.4663 -5.6120 23 8 4.8581 1.3582 -6.4711 24 6 5.0139 0.0091 -6.4251 25 6 5.6110 -0.6497 -7.4897 26 6 5.7807 -2.0207 -7.4478 27 6 5.3571 -2.7431 -6.3471 28 6 4.7598 -2.0957 -5.2818 29 6 4.5857 -0.7207 -5.3189 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.7094 1.1615 3.4844 34 1 2.4693 -2.7349 -1.0698 35 1 0.7453 -2.3293 -0.8921 36 1 1.5155 -2.2585 -2.4952 37 1 3.3240 1.8125 -3.5226 38 1 5.0775 1.6884 -3.8262 39 1 5.0360 3.7291 -5.2690 40 1 3.8859 3.8456 -6.6230 41 1 3.2949 3.9088 -4.9454 42 1 5.9431 -0.0911 -8.3522 43 1 6.2457 -2.5303 -8.2787 44 1 5.4929 -3.8141 -6.3200 45 1 4.4294 -2.6600 -4.4222 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276031409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:34 Heat of formation + Delta-G solvation = -55.858440 kcal Electronic energy + Delta-G solvation = -29457.777882 eV Core-core repulsion = 25441.639334 eV Total energy + Delta-G solvation = -4016.138548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.83188 -41.24095 -39.71831 -38.62634 -37.83597 -36.48341 -34.76557 -33.65395 -31.71481 -31.36673 -30.20492 -28.25968 -27.56339 -27.33623 -26.22475 -24.38452 -23.81899 -22.49674 -21.39345 -20.46408 -19.37180 -18.76269 -18.51509 -18.11633 -17.85818 -17.30608 -17.13895 -16.84537 -16.34097 -16.12203 -15.66827 -15.31397 -15.12961 -14.94389 -14.79031 -14.54561 -14.34213 -14.18495 -13.88289 -13.57417 -13.45301 -13.35077 -13.10342 -13.02741 -12.81045 -12.75728 -12.72878 -12.57675 -12.27029 -12.18536 -12.10399 -12.02544 -11.68695 -11.30851 -11.24208 -10.59167 -10.14657 -9.63584 -9.50719 -8.94668 -8.20141 -6.36238 -0.16646 0.35504 0.59657 1.00144 1.39723 1.42295 1.53148 1.94477 2.04688 2.26998 2.41078 2.78349 2.99586 3.09049 3.32208 3.65526 3.78542 3.86790 4.10122 4.23006 4.28530 4.34597 4.38634 4.46949 4.55983 4.66361 4.69015 4.70404 4.83470 4.85053 4.92887 4.96216 4.99535 5.01278 5.18144 5.25760 5.34803 5.34887 5.42089 5.54798 5.58940 5.73447 5.84137 5.89186 6.05832 6.21940 6.34960 6.54221 6.67746 6.89306 7.34529 8.84535 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.003311 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.150443 B = 8454.963088 C = 9360.198194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.260 3.740 3 H 0.028 0.972 4 C -0.544 4.544 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.556 5.556 13 C 0.084 3.916 14 C 0.489 3.511 15 O -0.550 6.550 16 C 0.512 3.488 17 O -0.500 6.500 18 N -0.531 5.531 19 C 0.051 3.949 20 C 0.077 3.923 21 H 0.076 0.924 22 C -0.136 4.136 23 O -0.315 6.315 24 C 0.085 3.915 25 C -0.130 4.130 26 C -0.093 4.093 27 C -0.130 4.130 28 C -0.131 4.131 29 C 0.047 3.953 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.027 0.973 33 H 0.267 0.733 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.152 0.848 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 -2.050 -20.262 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.159 3.841 3 H 0.046 0.954 4 C -0.582 4.582 5 H 0.074 0.926 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.788 3.212 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.198 1.198 12 N -0.286 5.286 13 C -0.058 4.058 14 C 0.272 3.728 15 O -0.432 6.432 16 C 0.297 3.703 17 O -0.376 6.376 18 N -0.255 5.255 19 C -0.070 4.070 20 C 0.020 3.980 21 H 0.094 0.906 22 C -0.194 4.194 23 O -0.230 6.230 24 C 0.038 3.962 25 C -0.149 4.149 26 C -0.112 4.112 27 C -0.148 4.148 28 C -0.151 4.151 29 C -0.046 4.046 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.154 0.846 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.175 0.825 43 H 0.185 0.815 44 H 0.170 0.830 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.355 -1.816 -20.095 21.154 hybrid contribution 0.037 -0.259 1.571 1.593 sum 6.392 -2.075 -18.524 19.705 Atomic orbital electron populations 1.21918 0.96287 1.00470 1.00673 1.18862 0.92217 0.92737 0.80277 0.95384 1.21514 1.32453 1.13244 0.91037 0.92550 1.25632 0.94886 0.95568 1.01681 1.69987 1.36813 1.23490 1.24643 0.85429 0.78296 0.78469 0.78973 1.19461 1.20777 1.19821 1.48270 1.45352 1.13711 1.21252 1.22104 1.01200 0.79575 1.02938 1.20004 0.81204 0.86915 0.84719 1.90542 1.59500 1.16914 1.76209 1.20263 0.79102 0.87006 0.83904 1.90541 1.54691 1.14780 1.77592 1.45517 1.49008 1.09147 1.21875 1.23593 1.06683 0.76808 0.99943 1.23023 0.91187 0.96640 0.87158 0.90587 1.21772 1.04401 0.88389 1.04808 1.86017 1.57474 1.17365 1.62136 1.18907 1.01363 0.82888 0.93031 1.20805 1.02330 0.94892 0.96853 1.21403 0.98287 0.92486 0.99004 1.21377 0.98828 1.01475 0.93126 1.21758 0.99768 0.92025 1.01574 1.18352 1.03892 0.93764 0.88567 0.93442 0.90562 0.95439 0.92350 0.92810 0.90471 0.88820 0.84588 0.89664 0.90860 0.89377 0.88728 0.82478 0.81481 0.83033 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.28 8.96 71.98 0.64 -5.63 16 2 C 0.26 13.13 2.62 44.24 0.12 13.25 16 3 H 0.03 1.63 6.90 -2.39 -0.02 1.62 16 4 C -0.54 -29.24 8.37 25.60 0.21 -29.03 16 5 H 0.06 3.03 7.65 -2.91 -0.02 3.01 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -50.50 11.32 21.45 0.24 -50.26 16 8 Si 0.96 42.49 29.54 68.60 2.03 44.51 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 12 N -0.56 -24.36 2.75 -828.52 -2.28 -26.64 16 13 C 0.08 3.10 8.55 127.77 1.09 4.19 16 14 C 0.49 20.65 7.59 87.23 0.66 21.31 16 15 O -0.55 -24.87 12.60 -3.29 -0.04 -24.91 16 16 C 0.51 18.87 7.49 87.23 0.65 19.52 16 17 O -0.50 -18.22 10.15 -3.35 -0.03 -18.25 16 18 N -0.53 -17.48 3.01 -629.44 -1.89 -19.37 16 19 C 0.05 1.48 5.19 86.41 0.45 1.93 16 20 C 0.08 1.78 3.58 30.77 0.11 1.89 16 21 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 22 C -0.14 -2.27 9.58 71.98 0.69 -1.58 16 23 O -0.32 -7.94 9.98 -92.24 -0.92 -8.86 16 24 C 0.09 2.23 6.51 22.63 0.15 2.38 16 25 C -0.13 -2.57 9.97 22.37 0.22 -2.35 16 26 C -0.09 -1.56 10.03 22.28 0.22 -1.34 16 27 C -0.13 -2.66 10.05 22.28 0.22 -2.44 16 28 C -0.13 -3.71 8.92 22.37 0.20 -3.51 16 29 C 0.05 1.43 6.32 38.13 0.24 1.67 16 30 H 0.05 2.03 6.67 -2.39 -0.02 2.02 16 31 H 0.08 3.91 6.07 -2.39 -0.01 3.89 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.75 6.44 -2.39 -0.02 2.73 16 36 H 0.09 3.19 5.69 -2.39 -0.01 3.18 16 37 H 0.14 4.39 4.98 -5.90 -0.03 4.36 16 38 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 43 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 44 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.14 4.57 5.20 -3.52 -0.02 4.55 16 Total: -1.00 -64.19 358.79 4.44 -59.75 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 1.00 Total: 22.11 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.34 Total: 21.92 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -3.93 Total: -96.27 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -1.00 Total: -52.03 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -64.19 4.44 -59.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276031409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.890 kcal (2) G-P(sol) polarization free energy of solvation -64.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds