Wall clock time and date at job start Tue Mar 31 2020 17:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.47289 * 2 1 4 4 C 1.50700 * 109.47088 * 119.99697 * 2 1 3 5 5 H 1.08006 * 119.99291 * 120.00048 * 4 2 1 6 6 C 1.37866 * 120.00239 * 300.00523 * 4 2 1 7 7 N 1.31517 * 120.00293 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47016 * 59.99457 * 8 6 4 10 10 H 1.48501 * 109.47204 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46666 * 299.99610 * 8 6 4 12 12 N 1.46494 * 109.47117 * 240.00245 * 2 1 3 13 13 C 1.46498 * 119.99965 * 299.99506 * 12 2 1 14 14 C 1.34784 * 120.00345 * 120.00160 * 12 2 1 15 15 O 1.21359 * 119.99326 * 3.28570 * 14 12 2 16 16 C 1.49332 * 120.00251 * 183.28573 * 14 12 2 17 17 O 1.21390 * 119.99748 * 6.09903 * 16 14 12 18 18 N 1.34768 * 119.99913 * 186.09563 * 16 14 12 19 19 C 1.47290 * 121.15028 * 359.22985 * 18 16 14 20 20 C 1.53529 * 107.60256 * 138.01674 * 19 18 16 21 21 H 1.09001 * 109.58590 * 298.35141 * 20 19 18 22 22 C 1.52997 * 109.58584 * 177.93788 * 20 19 18 23 23 O 1.43013 * 108.76012 * 58.18433 * 20 19 18 24 24 C 1.35881 * 117.71996 * 310.43876 * 23 20 19 25 25 C 1.38696 * 119.67145 * 200.25684 * 24 23 20 26 26 C 1.38204 * 120.05087 * 180.39526 * 25 24 23 27 27 C 1.38301 * 120.31146 * 0.02562 * 26 25 24 28 28 C 1.38228 * 120.07243 * 359.91464 * 27 26 25 29 29 C 1.38650 * 119.86879 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47038 * 300.00305 * 1 2 3 31 31 H 1.09004 * 109.46528 * 59.99726 * 1 2 3 32 32 H 1.08995 * 109.46641 * 179.97438 * 1 2 3 33 33 H 0.96996 * 120.00209 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47705 * 263.85754 * 13 12 2 35 35 H 1.09003 * 109.47350 * 23.86361 * 13 12 2 36 36 H 1.09005 * 109.47350 * 143.85669 * 13 12 2 37 37 H 1.09001 * 109.83674 * 257.54644 * 19 18 16 38 38 H 1.09002 * 109.82915 * 18.49061 * 19 18 16 39 39 H 1.08989 * 109.47126 * 59.99900 * 22 20 19 40 40 H 1.09000 * 109.47352 * 180.02562 * 22 20 19 41 41 H 1.09001 * 109.47064 * 300.00149 * 22 20 19 42 42 H 1.07999 * 119.97767 * 0.36679 * 25 24 23 43 43 H 1.08002 * 119.84436 * 179.97438 * 26 25 24 44 44 H 1.07996 * 119.96442 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.06518 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8279 -0.4193 5.2204 11 1 1.8281 -2.5198 4.0081 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0931 -1.4280 14 6 2.7933 -0.0355 -2.0834 15 8 3.1357 1.1075 -1.8620 16 6 3.2304 -0.7163 -3.3385 17 8 2.7994 -1.8173 -3.6136 18 7 4.1034 -0.1084 -4.1659 19 6 4.6294 1.2342 -3.8655 20 6 6.1290 1.2296 -4.1942 21 1 6.6388 0.5003 -3.5646 22 6 6.7127 2.6220 -3.9464 23 8 6.2973 0.8777 -5.5701 24 6 5.6461 -0.2249 -6.0246 25 6 6.0811 -0.8501 -7.1837 26 6 5.4196 -1.9672 -7.6576 27 6 4.3219 -2.4676 -6.9813 28 6 3.8814 -1.8523 -5.8246 29 6 4.5425 -0.7326 -5.3432 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 0.7094 1.1617 3.4844 34 1 2.4687 -2.7350 -1.0683 35 1 0.7445 -2.3290 -0.8931 36 1 1.5170 -2.2590 -2.4952 37 1 4.1187 1.9772 -4.4782 38 1 4.4829 1.4609 -2.8094 39 1 6.5719 2.8941 -2.9004 40 1 7.7772 2.6168 -4.1807 41 1 6.2047 3.3473 -4.5820 42 1 6.9372 -0.4635 -7.7167 43 1 5.7610 -2.4512 -8.5607 44 1 3.8089 -3.3406 -7.3568 45 1 3.0239 -2.2429 -5.2968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276031413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:40 Heat of formation + Delta-G solvation = -31.407922 kcal Electronic energy + Delta-G solvation = -29487.796679 eV Core-core repulsion = 25472.718385 eV Total energy + Delta-G solvation = -4015.078294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.62700 -39.92534 -38.34676 -37.57926 -36.35569 -35.02900 -32.87617 -32.69562 -30.59952 -29.61865 -29.15942 -27.04060 -26.13528 -25.36921 -24.84440 -23.18444 -22.84107 -21.06628 -20.16391 -19.05182 -18.26690 -17.48121 -16.99670 -16.47650 -16.36937 -16.02738 -15.78033 -15.45010 -15.11339 -14.66360 -14.35545 -14.09090 -13.97856 -13.79839 -13.31289 -13.19229 -13.04582 -12.71468 -12.58454 -12.52938 -12.22731 -12.11408 -11.87904 -11.65883 -11.48341 -11.21015 -11.07920 -10.98716 -10.90862 -10.83528 -10.36437 -10.25963 -10.24368 -10.06022 -9.33192 -8.67581 -8.55737 -8.46527 -7.96992 -7.78471 -6.18490 -4.27390 1.02928 1.33235 1.85255 2.31822 3.06929 3.22851 3.27861 3.29771 3.44617 3.64624 3.80146 4.29036 4.34660 4.50881 4.71471 4.79307 4.83984 4.98659 5.13269 5.17911 5.26813 5.36442 5.42452 5.48914 5.55737 5.77798 5.88960 5.92729 6.01256 6.02350 6.15207 6.20882 6.34165 6.44791 6.51450 6.63208 6.66917 6.78526 6.87210 7.01888 7.12902 7.26228 7.31507 7.57929 7.71779 7.88417 7.99628 8.23824 8.45477 8.76879 9.39240 10.86840 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.003356 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.157547 B = 8342.451597 C = 9163.554194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.254 3.746 3 H 0.068 0.932 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.543 5.543 13 C 0.059 3.941 14 C 0.496 3.504 15 O -0.529 6.529 16 C 0.513 3.487 17 O -0.497 6.497 18 N -0.530 5.530 19 C 0.034 3.966 20 C 0.073 3.927 21 H 0.077 0.923 22 C -0.141 4.141 23 O -0.314 6.314 24 C 0.101 3.899 25 C -0.133 4.133 26 C -0.109 4.109 27 C -0.133 4.133 28 C -0.118 4.118 29 C 0.076 3.924 30 H 0.098 0.902 31 H 0.014 0.986 32 H 0.034 0.966 33 H 0.266 0.734 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.168 0.832 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.804 -1.812 -16.413 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.155 3.845 3 H 0.086 0.914 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.272 5.272 13 C -0.084 4.084 14 C 0.278 3.722 15 O -0.411 6.411 16 C 0.299 3.701 17 O -0.373 6.373 18 N -0.254 5.254 19 C -0.087 4.087 20 C 0.016 3.984 21 H 0.095 0.905 22 C -0.199 4.199 23 O -0.228 6.228 24 C 0.053 3.947 25 C -0.152 4.152 26 C -0.128 4.128 27 C -0.152 4.152 28 C -0.137 4.137 29 C -0.018 4.018 30 H 0.116 0.884 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.184 0.816 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.695 -1.537 -16.242 18.038 hybrid contribution 0.251 -0.591 0.960 1.155 sum 7.946 -2.128 -15.282 17.355 Atomic orbital electron populations 1.22124 0.97449 0.99905 1.01193 1.19223 0.91383 0.94585 0.79342 0.91445 1.21214 1.32402 1.13256 0.89957 0.92101 1.24871 0.94769 0.94928 0.98985 1.69855 1.36020 1.22436 1.24140 0.86500 0.79269 0.79642 0.81698 1.20167 1.21064 1.20100 1.48311 1.44761 1.12593 1.21551 1.22364 1.01204 0.80986 1.03814 1.19498 0.81926 0.86737 0.84081 1.90402 1.55856 1.18030 1.76782 1.20890 0.78983 0.85296 0.84915 1.90402 1.53431 1.19617 1.73846 1.45571 1.42028 1.18272 1.19533 1.23994 0.92997 0.81814 1.09861 1.22936 0.95812 0.99060 0.80552 0.90509 1.21738 1.01681 0.93130 1.03326 1.86019 1.67666 1.41390 1.27775 1.18592 0.90797 0.89374 0.95892 1.20373 1.01983 0.96641 0.96207 1.20940 0.96119 0.95732 0.99974 1.21071 0.97718 1.00804 0.95590 1.22032 1.01180 0.94259 0.96246 1.18150 0.96226 0.97878 0.89580 0.88353 0.96724 0.94668 0.92435 0.93061 0.90815 0.88314 0.89646 0.81562 0.89437 0.91096 0.91177 0.85010 0.85526 0.85547 0.81308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.96 37.16 0.33 -3.07 16 2 C 0.25 6.20 2.62 -69.08 -0.18 6.02 16 3 H 0.07 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -13.86 8.37 -34.44 -0.29 -14.15 16 5 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.08 11.32 55.43 0.63 -23.45 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.54 -11.52 2.75 -175.81 -0.48 -12.00 16 13 C 0.06 1.08 8.95 59.85 0.54 1.61 16 14 C 0.50 10.00 7.65 -11.64 -0.09 9.91 16 15 O -0.53 -11.26 12.42 5.49 0.07 -11.19 16 16 C 0.51 9.11 7.60 -11.64 -0.09 9.02 16 17 O -0.50 -8.73 9.82 5.46 0.05 -8.68 16 18 N -0.53 -8.54 3.01 -112.90 -0.34 -8.88 16 19 C 0.03 0.49 5.45 -3.34 -0.02 0.47 16 20 C 0.07 0.91 3.59 -26.46 -0.09 0.81 16 21 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 22 C -0.14 -1.33 9.58 37.16 0.36 -0.98 16 23 O -0.31 -4.26 9.97 -19.37 -0.19 -4.45 16 24 C 0.10 1.41 6.51 -39.02 -0.25 1.16 16 25 C -0.13 -1.55 9.97 -39.42 -0.39 -1.94 16 26 C -0.11 -1.13 10.03 -39.57 -0.40 -1.53 16 27 C -0.13 -1.53 10.04 -39.56 -0.40 -1.93 16 28 C -0.12 -1.68 8.99 -39.43 -0.35 -2.04 16 29 C 0.08 1.16 6.33 -83.44 -0.53 0.63 16 30 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.03 0.75 6.67 -51.93 -0.35 0.41 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.33 6.44 -51.93 -0.33 0.99 16 36 H 0.10 1.69 5.05 -51.91 -0.26 1.42 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.17 2.65 4.48 -54.44 -0.24 2.41 16 39 H 0.09 0.76 8.14 -51.94 -0.42 0.34 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.17 2.58 4.98 -52.63 -0.26 2.32 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -28.67 357.83 -7.74 -36.41 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.89 Total: 5.73 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.95 Total: 5.67 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.20 Total: -44.34 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.07 Total: -24.32 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.67 -7.74 -36.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276031413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.000 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds