Wall clock time and date at job start Tue Mar 31 2020 17:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.47289 * 2 1 4 4 C 1.50700 * 109.47088 * 119.99697 * 2 1 3 5 5 H 1.08006 * 119.99291 * 120.00048 * 4 2 1 6 6 C 1.37866 * 120.00239 * 300.00523 * 4 2 1 7 7 N 1.31517 * 120.00293 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47016 * 59.99457 * 8 6 4 10 10 H 1.48501 * 109.47204 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46666 * 299.99610 * 8 6 4 12 12 N 1.46494 * 109.47117 * 240.00245 * 2 1 3 13 13 C 1.46498 * 119.99965 * 299.99506 * 12 2 1 14 14 C 1.34784 * 120.00345 * 120.00160 * 12 2 1 15 15 O 1.21359 * 119.99326 * 3.28570 * 14 12 2 16 16 C 1.49332 * 120.00251 * 183.28573 * 14 12 2 17 17 O 1.21390 * 119.99748 * 6.09903 * 16 14 12 18 18 N 1.34768 * 119.99913 * 186.09563 * 16 14 12 19 19 C 1.47290 * 121.15028 * 359.22985 * 18 16 14 20 20 C 1.53529 * 107.60256 * 138.01674 * 19 18 16 21 21 H 1.09001 * 109.58590 * 298.35141 * 20 19 18 22 22 C 1.52997 * 109.58584 * 177.93788 * 20 19 18 23 23 O 1.43013 * 108.76012 * 58.18433 * 20 19 18 24 24 C 1.35881 * 117.71996 * 310.43876 * 23 20 19 25 25 C 1.38696 * 119.67145 * 200.25684 * 24 23 20 26 26 C 1.38204 * 120.05087 * 180.39526 * 25 24 23 27 27 C 1.38301 * 120.31146 * 0.02562 * 26 25 24 28 28 C 1.38228 * 120.07243 * 359.91464 * 27 26 25 29 29 C 1.38650 * 119.86879 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47038 * 300.00305 * 1 2 3 31 31 H 1.09004 * 109.46528 * 59.99726 * 1 2 3 32 32 H 1.08995 * 109.46641 * 179.97438 * 1 2 3 33 33 H 0.96996 * 120.00209 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47705 * 263.85754 * 13 12 2 35 35 H 1.09003 * 109.47350 * 23.86361 * 13 12 2 36 36 H 1.09005 * 109.47350 * 143.85669 * 13 12 2 37 37 H 1.09001 * 109.83674 * 257.54644 * 19 18 16 38 38 H 1.09002 * 109.82915 * 18.49061 * 19 18 16 39 39 H 1.08989 * 109.47126 * 59.99900 * 22 20 19 40 40 H 1.09000 * 109.47352 * 180.02562 * 22 20 19 41 41 H 1.09001 * 109.47064 * 300.00149 * 22 20 19 42 42 H 1.07999 * 119.97767 * 0.36679 * 25 24 23 43 43 H 1.08002 * 119.84436 * 179.97438 * 26 25 24 44 44 H 1.07996 * 119.96442 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.06518 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8279 -0.4193 5.2204 11 1 1.8281 -2.5198 4.0081 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0931 -1.4280 14 6 2.7933 -0.0355 -2.0834 15 8 3.1357 1.1075 -1.8620 16 6 3.2304 -0.7163 -3.3385 17 8 2.7994 -1.8173 -3.6136 18 7 4.1034 -0.1084 -4.1659 19 6 4.6294 1.2342 -3.8655 20 6 6.1290 1.2296 -4.1942 21 1 6.6388 0.5003 -3.5646 22 6 6.7127 2.6220 -3.9464 23 8 6.2973 0.8777 -5.5701 24 6 5.6461 -0.2249 -6.0246 25 6 6.0811 -0.8501 -7.1837 26 6 5.4196 -1.9672 -7.6576 27 6 4.3219 -2.4676 -6.9813 28 6 3.8814 -1.8523 -5.8246 29 6 4.5425 -0.7326 -5.3432 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 0.7094 1.1617 3.4844 34 1 2.4687 -2.7350 -1.0683 35 1 0.7445 -2.3290 -0.8931 36 1 1.5170 -2.2590 -2.4952 37 1 4.1187 1.9772 -4.4782 38 1 4.4829 1.4609 -2.8094 39 1 6.5719 2.8941 -2.9004 40 1 7.7772 2.6168 -4.1807 41 1 6.2047 3.3473 -4.5820 42 1 6.9372 -0.4635 -7.7167 43 1 5.7610 -2.4512 -8.5607 44 1 3.8089 -3.3406 -7.3568 45 1 3.0239 -2.2429 -5.2968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276031413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:38 Heat of formation + Delta-G solvation = -47.412797 kcal Electronic energy + Delta-G solvation = -29488.490703 eV Core-core repulsion = 25472.718385 eV Total energy + Delta-G solvation = -4015.772318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.85235 -41.24783 -39.74744 -38.61551 -37.86880 -36.47740 -34.75614 -33.65050 -31.71290 -31.35626 -30.20496 -28.29842 -27.52852 -27.32897 -26.21782 -24.40576 -23.81502 -22.51793 -21.37487 -20.54996 -19.35301 -18.71547 -18.57485 -18.12651 -17.85338 -17.25697 -17.15355 -16.89249 -16.36204 -16.14025 -15.71310 -15.33985 -15.12102 -14.88064 -14.78193 -14.55977 -14.32683 -14.13585 -14.04247 -13.60831 -13.46617 -13.36224 -13.15901 -12.98883 -12.79766 -12.78855 -12.72937 -12.53208 -12.24174 -12.21930 -12.07917 -11.97479 -11.54379 -11.31306 -11.20942 -10.57558 -10.05391 -9.58065 -9.53502 -8.95315 -8.19035 -6.35663 -0.17014 0.36283 0.59221 0.99214 1.42411 1.43180 1.51206 1.95755 2.04141 2.26937 2.41852 2.78856 2.97415 3.09813 3.32940 3.66939 3.78178 3.87670 4.11007 4.23694 4.29140 4.35141 4.40216 4.46863 4.56975 4.67278 4.71223 4.72875 4.82707 4.85006 4.92665 4.96289 5.01312 5.03563 5.17902 5.27146 5.35071 5.36579 5.44964 5.55573 5.59337 5.75945 5.85662 5.88952 6.06298 6.24218 6.35747 6.55410 6.67899 6.89388 7.35034 8.85210 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.003356 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.157547 B = 8342.451597 C = 9163.554194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.259 3.741 3 H 0.029 0.971 4 C -0.545 4.545 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.963 3.037 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.266 1.266 12 N -0.554 5.554 13 C 0.064 3.936 14 C 0.490 3.510 15 O -0.547 6.547 16 C 0.515 3.485 17 O -0.500 6.500 18 N -0.527 5.527 19 C 0.033 3.967 20 C 0.076 3.924 21 H 0.071 0.929 22 C -0.136 4.136 23 O -0.316 6.316 24 C 0.084 3.916 25 C -0.132 4.132 26 C -0.094 4.094 27 C -0.131 4.131 28 C -0.135 4.135 29 C 0.044 3.956 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.047 0.953 33 H 0.267 0.733 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.150 0.850 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.153 0.847 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -3.124 -18.352 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.159 3.841 3 H 0.046 0.954 4 C -0.583 4.583 5 H 0.075 0.925 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.191 1.191 12 N -0.283 5.283 13 C -0.077 4.077 14 C 0.273 3.727 15 O -0.429 6.429 16 C 0.300 3.700 17 O -0.377 6.377 18 N -0.251 5.251 19 C -0.087 4.087 20 C 0.020 3.980 21 H 0.089 0.911 22 C -0.193 4.193 23 O -0.231 6.231 24 C 0.037 3.963 25 C -0.151 4.151 26 C -0.112 4.112 27 C -0.149 4.149 28 C -0.154 4.154 29 C -0.049 4.049 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.167 0.833 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.174 0.826 43 H 0.184 0.816 44 H 0.171 0.829 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.106 -2.856 -18.221 20.569 hybrid contribution -0.120 -0.177 1.412 1.428 sum 8.986 -3.034 -16.810 19.301 Atomic orbital electron populations 1.21932 0.96460 1.00445 1.00592 1.18862 0.92082 0.92780 0.80402 0.95355 1.21441 1.32575 1.13288 0.90980 0.92471 1.25632 0.94865 0.95546 1.01688 1.69975 1.36761 1.23489 1.24775 0.85539 0.78497 0.78911 0.78275 1.20194 1.20585 1.19126 1.48258 1.45374 1.13611 1.21098 1.22441 1.01184 0.79355 1.04724 1.19987 0.81298 0.86653 0.84777 1.90412 1.56162 1.18880 1.77478 1.20261 0.79946 0.85326 0.84452 1.90393 1.53978 1.19489 1.73798 1.45532 1.41292 1.18594 1.19660 1.23957 0.94686 0.81338 1.08727 1.22996 0.94192 1.00585 0.80248 0.91122 1.21758 1.02457 0.91286 1.03813 1.86017 1.67587 1.41477 1.27993 1.18938 0.90777 0.89793 0.96758 1.20796 1.02509 0.96600 0.95190 1.21411 0.94663 0.94657 1.00470 1.21411 0.97977 1.01148 0.94385 1.22032 1.01198 0.94577 0.97609 1.18408 0.97707 0.99072 0.89702 0.90538 0.95629 0.93448 0.92341 0.93033 0.90603 0.86940 0.89248 0.83316 0.88930 0.89535 0.90583 0.82627 0.81557 0.82934 0.82776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.37 8.96 71.98 0.65 -5.73 16 2 C 0.26 13.10 2.62 44.25 0.12 13.22 16 3 H 0.03 1.65 6.90 -2.38 -0.02 1.63 16 4 C -0.54 -29.05 8.37 25.60 0.21 -28.83 16 5 H 0.06 3.02 7.65 -2.91 -0.02 3.00 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -50.50 11.32 21.44 0.24 -50.25 16 8 Si 0.96 42.11 29.54 68.60 2.03 44.14 16 9 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 N -0.55 -24.16 2.75 -828.50 -2.28 -26.44 16 13 C 0.06 2.38 8.95 127.77 1.14 3.52 16 14 C 0.49 20.52 7.65 87.23 0.67 21.19 16 15 O -0.55 -24.49 12.42 -3.28 -0.04 -24.53 16 16 C 0.51 18.75 7.60 87.23 0.66 19.41 16 17 O -0.50 -17.77 9.82 -3.37 -0.03 -17.80 16 18 N -0.53 -17.31 3.01 -629.45 -1.89 -19.20 16 19 C 0.03 0.98 5.45 86.41 0.47 1.46 16 20 C 0.08 1.88 3.59 30.77 0.11 1.99 16 21 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 22 C -0.14 -2.43 9.58 71.98 0.69 -1.74 16 23 O -0.32 -8.19 9.97 -92.21 -0.92 -9.11 16 24 C 0.08 2.24 6.51 22.63 0.15 2.39 16 25 C -0.13 -2.66 9.97 22.37 0.22 -2.44 16 26 C -0.09 -1.57 10.03 22.28 0.22 -1.35 16 27 C -0.13 -2.64 10.04 22.28 0.22 -2.42 16 28 C -0.13 -3.73 8.99 22.37 0.20 -3.53 16 29 C 0.04 1.33 6.33 38.13 0.24 1.57 16 30 H 0.08 3.94 6.07 -2.39 -0.01 3.93 16 31 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.05 2.05 6.67 -2.39 -0.02 2.04 16 33 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 2.72 6.44 -2.39 -0.02 2.70 16 36 H 0.11 3.84 5.05 -10.74 -0.05 3.78 16 37 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.15 4.99 4.48 -42.22 -0.19 4.80 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 45 H 0.16 4.70 4.98 -13.81 -0.07 4.63 16 Total: -1.00 -63.09 357.83 4.28 -58.82 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.75 Total: 23.98 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 6.43 Total: 20.40 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -3.93 Total: -95.90 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.99 Total: -51.43 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -63.09 4.28 -58.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276031413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.403 kcal (2) G-P(sol) polarization free energy of solvation -63.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds