Wall clock time and date at job start Tue Mar 31 2020 17:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47214 * 2 1 4 4 C 1.50701 * 109.47306 * 239.99975 * 2 1 3 5 5 H 1.07998 * 120.00399 * 240.00002 * 4 2 1 6 6 C 1.37880 * 119.99679 * 60.00337 * 4 2 1 7 7 N 1.31512 * 120.00283 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99950 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47408 * 89.99705 * 8 6 4 10 10 H 1.48505 * 109.46916 * 209.99892 * 8 6 4 11 11 H 1.48503 * 109.46812 * 329.99247 * 8 6 4 12 12 N 1.46497 * 109.47313 * 120.00254 * 2 1 3 13 13 C 1.46505 * 119.99972 * 59.99575 * 12 2 1 14 14 C 1.34776 * 120.00154 * 240.00482 * 12 2 1 15 15 O 1.21363 * 120.00028 * 359.23111 * 14 12 2 16 16 C 1.49334 * 120.00043 * 179.23765 * 14 12 2 17 17 O 1.21393 * 120.00270 * 353.82526 * 16 14 12 18 18 N 1.34778 * 119.99913 * 173.82663 * 16 14 12 19 19 C 1.47292 * 121.14441 * 353.25485 * 18 16 14 20 20 C 1.53529 * 107.59978 * 221.97834 * 19 18 16 21 21 H 1.09002 * 109.58312 * 61.65580 * 20 19 18 22 22 C 1.52997 * 109.58482 * 181.93048 * 20 19 18 23 23 O 1.43007 * 108.76675 * 301.82275 * 20 19 18 24 24 C 1.35884 * 117.71563 * 49.55649 * 23 20 19 25 25 C 1.38701 * 119.66876 * 159.74561 * 24 23 20 26 26 C 1.38208 * 120.05264 * 179.60898 * 25 24 23 27 27 C 1.38300 * 120.30936 * 0.02562 * 26 25 24 28 28 C 1.38223 * 120.07076 * 0.02562 * 27 26 25 29 29 C 1.38650 * 119.87494 * 0.04981 * 28 27 26 30 30 H 1.09003 * 109.47355 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47466 * 299.99528 * 1 2 3 32 32 H 1.09003 * 109.47227 * 60.00086 * 1 2 3 33 33 H 0.96996 * 120.00363 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47564 * 263.78553 * 13 12 2 35 35 H 1.09003 * 109.46805 * 23.78700 * 13 12 2 36 36 H 1.09004 * 109.46540 * 143.78277 * 13 12 2 37 37 H 1.08994 * 109.83441 * 341.50679 * 19 18 16 38 38 H 1.09002 * 109.82953 * 102.39468 * 19 18 16 39 39 H 1.08998 * 109.46838 * 60.00341 * 22 20 19 40 40 H 1.09003 * 109.47064 * 180.02562 * 22 20 19 41 41 H 1.09001 * 109.47104 * 299.99975 * 22 20 19 42 42 H 1.07998 * 119.97836 * 359.58595 * 25 24 23 43 43 H 1.07997 * 119.84376 * 180.02562 * 26 25 24 44 44 H 1.08000 * 119.96007 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.06042 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7581 -3.7122 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0933 1.4279 14 6 2.7931 -0.0357 2.0833 15 8 3.0977 1.1221 1.8844 16 6 3.2769 -0.7347 3.3111 17 8 2.8828 -1.8538 3.5675 18 7 4.1510 -0.1229 4.1346 19 6 4.7583 1.1703 3.7761 20 6 6.2429 1.1090 4.1626 21 1 6.7352 0.3176 3.5974 22 6 6.9092 2.4509 3.8529 23 8 6.3429 0.8333 5.5623 24 6 5.6179 -0.2048 6.0553 25 6 5.9772 -0.7798 7.2653 26 6 5.2406 -1.8307 7.7781 27 6 4.1433 -2.3153 7.0898 28 6 3.7777 -1.7496 5.8827 29 6 4.5139 -0.6961 5.3626 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.7082 1.1610 -3.4844 34 1 0.8008 -2.1453 2.0910 35 1 1.4218 -2.5686 0.4775 36 1 2.5072 -2.6094 1.8877 37 1 4.6620 1.3394 2.7037 38 1 4.2657 1.9743 4.3229 39 1 6.4188 3.2402 4.4227 40 1 7.9631 2.4052 4.1275 41 1 6.8207 2.6633 2.7874 42 1 6.8336 -0.4062 7.8070 43 1 5.5232 -2.2756 8.7207 44 1 3.5714 -3.1365 7.4959 45 1 2.9205 -2.1279 5.3456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276031417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:45 Heat of formation + Delta-G solvation = -40.486812 kcal Electronic energy + Delta-G solvation = -29474.843096 eV Core-core repulsion = 25459.371111 eV Total energy + Delta-G solvation = -4015.471985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60884 -39.90439 -38.30689 -37.59263 -36.30671 -35.02840 -32.88246 -32.70617 -30.60699 -29.62193 -29.16254 -27.00329 -26.14104 -25.36919 -24.85012 -23.16997 -22.84332 -21.06086 -20.17264 -18.97445 -18.28647 -17.45094 -16.97808 -16.53226 -16.37553 -16.05272 -15.71106 -15.40002 -15.11354 -14.64286 -14.26626 -14.12934 -13.97762 -13.82867 -13.30152 -13.20364 -13.03345 -12.65427 -12.60052 -12.41272 -12.24339 -11.97467 -11.85493 -11.70198 -11.53711 -11.24059 -11.06360 -11.00602 -10.91585 -10.81627 -10.42502 -10.35519 -10.26638 -10.16023 -9.31024 -8.77151 -8.56522 -8.45898 -7.97630 -7.78170 -6.19249 -4.28161 1.03102 1.32179 1.86903 2.32958 3.05689 3.20681 3.27983 3.30701 3.44980 3.66713 3.78621 4.28926 4.33841 4.52382 4.70139 4.78330 4.82095 4.97706 5.12645 5.17168 5.25837 5.34326 5.41310 5.48250 5.54427 5.77285 5.88059 5.91952 5.99081 6.01934 6.12848 6.18273 6.34313 6.44597 6.51238 6.61240 6.67851 6.75726 6.88561 6.99901 7.12001 7.26910 7.30717 7.57534 7.70301 7.87706 7.99914 8.23769 8.46895 8.76629 9.38447 10.86150 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.003351 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.759589 B = 8353.643402 C = 9194.172799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.254 3.746 3 H 0.068 0.932 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.546 5.546 13 C 0.074 3.926 14 C 0.495 3.505 15 O -0.531 6.531 16 C 0.510 3.490 17 O -0.496 6.496 18 N -0.534 5.534 19 C 0.052 3.948 20 C 0.072 3.928 21 H 0.077 0.923 22 C -0.142 4.142 23 O -0.313 6.313 24 C 0.099 3.901 25 C -0.132 4.132 26 C -0.109 4.109 27 C -0.131 4.131 28 C -0.113 4.113 29 C 0.079 3.921 30 H 0.033 0.967 31 H 0.013 0.987 32 H 0.097 0.903 33 H 0.265 0.735 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.229 -1.979 16.286 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.085 0.915 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.275 5.275 13 C -0.069 4.069 14 C 0.276 3.724 15 O -0.412 6.412 16 C 0.296 3.704 17 O -0.371 6.371 18 N -0.259 5.259 19 C -0.069 4.069 20 C 0.015 3.985 21 H 0.095 0.905 22 C -0.199 4.199 23 O -0.227 6.227 24 C 0.052 3.948 25 C -0.151 4.151 26 C -0.128 4.128 27 C -0.150 4.150 28 C -0.133 4.133 29 C -0.015 4.015 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.169 0.831 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.131 -1.712 16.112 18.128 hybrid contribution 0.136 -0.565 -0.934 1.100 sum 8.268 -2.276 15.178 17.433 Atomic orbital electron populations 1.22102 0.97445 0.99909 1.01114 1.19213 0.91409 0.94597 0.79248 0.91453 1.21261 1.32415 1.13290 0.89950 0.91966 1.24879 0.94774 0.94908 0.99004 1.69865 1.35984 1.22445 1.24045 0.86443 0.79276 0.79311 0.82099 1.20467 1.21000 1.19840 1.48320 1.44945 1.12573 1.21656 1.22081 1.01146 0.81630 1.01999 1.19525 0.81950 0.86952 0.83970 1.90547 1.57442 1.16778 1.76440 1.20893 0.79058 0.85621 0.84822 1.90548 1.56137 1.17928 1.72467 1.45545 1.41995 1.22022 1.16307 1.23591 0.91907 0.83563 1.07851 1.22945 0.95940 0.99816 0.79799 0.90531 1.21742 1.01129 0.93972 1.03052 1.86020 1.64780 1.46583 1.25350 1.18578 0.90040 0.90889 0.95278 1.20377 1.01978 0.97599 0.95106 1.20931 0.95737 0.96211 0.99939 1.21042 0.98034 1.00947 0.95000 1.21759 1.00442 0.95114 0.95988 1.18096 0.96324 0.99102 0.87942 0.94758 0.96795 0.88419 0.92481 0.93127 0.90192 0.90089 0.83055 0.89413 0.91104 0.91060 0.89482 0.84982 0.85485 0.85528 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.25 6.23 2.63 -69.09 -0.18 6.05 16 3 H 0.07 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -13.79 7.95 -34.44 -0.27 -14.07 16 5 H 0.06 1.61 7.44 -52.49 -0.39 1.21 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.02 11.32 55.43 0.63 -23.39 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.55 -11.61 2.75 -175.81 -0.48 -12.10 16 13 C 0.07 1.37 8.28 59.85 0.50 1.86 16 14 C 0.49 10.06 7.59 -11.64 -0.09 9.97 16 15 O -0.53 -11.44 12.60 5.49 0.07 -11.37 16 16 C 0.51 9.14 7.50 -11.64 -0.09 9.05 16 17 O -0.50 -8.85 10.15 5.46 0.06 -8.80 16 18 N -0.53 -8.63 3.01 -112.90 -0.34 -8.97 16 19 C 0.05 0.75 5.19 -3.34 -0.02 0.73 16 20 C 0.07 0.88 3.58 -26.46 -0.09 0.78 16 21 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.14 -1.31 9.58 37.16 0.36 -0.96 16 23 O -0.31 -4.20 9.98 -19.38 -0.19 -4.39 16 24 C 0.10 1.38 6.51 -39.02 -0.25 1.13 16 25 C -0.13 -1.52 9.97 -39.42 -0.39 -1.91 16 26 C -0.11 -1.13 10.03 -39.57 -0.40 -1.53 16 27 C -0.13 -1.51 10.04 -39.56 -0.40 -1.91 16 28 C -0.11 -1.62 8.92 -39.43 -0.35 -1.98 16 29 C 0.08 1.21 6.32 -83.44 -0.53 0.69 16 30 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.49 7.12 -51.93 -0.37 1.12 16 36 H 0.08 1.43 5.69 -51.93 -0.30 1.14 16 37 H 0.15 2.39 4.98 -52.16 -0.26 2.13 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.16 2.50 5.19 -52.53 -0.27 2.22 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -28.79 359.59 -7.86 -36.65 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.02 Total: 5.11 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.97 Total: 6.50 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.20 Total: -44.46 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.07 Total: -24.55 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.79 -7.86 -36.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276031417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.836 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds