Wall clock time and date at job start Tue Mar 31 2020 17:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47214 * 2 1 4 4 C 1.50701 * 109.47306 * 239.99975 * 2 1 3 5 5 H 1.07998 * 120.00399 * 240.00002 * 4 2 1 6 6 C 1.37880 * 119.99679 * 60.00337 * 4 2 1 7 7 N 1.31512 * 120.00283 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99950 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47408 * 89.99705 * 8 6 4 10 10 H 1.48505 * 109.46916 * 209.99892 * 8 6 4 11 11 H 1.48503 * 109.46812 * 329.99247 * 8 6 4 12 12 N 1.46497 * 109.47313 * 120.00254 * 2 1 3 13 13 C 1.46505 * 119.99972 * 59.99575 * 12 2 1 14 14 C 1.34776 * 120.00154 * 240.00482 * 12 2 1 15 15 O 1.21363 * 120.00028 * 359.23111 * 14 12 2 16 16 C 1.49334 * 120.00043 * 179.23765 * 14 12 2 17 17 O 1.21393 * 120.00270 * 353.82526 * 16 14 12 18 18 N 1.34778 * 119.99913 * 173.82663 * 16 14 12 19 19 C 1.47292 * 121.14441 * 353.25485 * 18 16 14 20 20 C 1.53529 * 107.59978 * 221.97834 * 19 18 16 21 21 H 1.09002 * 109.58312 * 61.65580 * 20 19 18 22 22 C 1.52997 * 109.58482 * 181.93048 * 20 19 18 23 23 O 1.43007 * 108.76675 * 301.82275 * 20 19 18 24 24 C 1.35884 * 117.71563 * 49.55649 * 23 20 19 25 25 C 1.38701 * 119.66876 * 159.74561 * 24 23 20 26 26 C 1.38208 * 120.05264 * 179.60898 * 25 24 23 27 27 C 1.38300 * 120.30936 * 0.02562 * 26 25 24 28 28 C 1.38223 * 120.07076 * 0.02562 * 27 26 25 29 29 C 1.38650 * 119.87494 * 0.04981 * 28 27 26 30 30 H 1.09003 * 109.47355 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47466 * 299.99528 * 1 2 3 32 32 H 1.09003 * 109.47227 * 60.00086 * 1 2 3 33 33 H 0.96996 * 120.00363 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47564 * 263.78553 * 13 12 2 35 35 H 1.09003 * 109.46805 * 23.78700 * 13 12 2 36 36 H 1.09004 * 109.46540 * 143.78277 * 13 12 2 37 37 H 1.08994 * 109.83441 * 341.50679 * 19 18 16 38 38 H 1.09002 * 109.82953 * 102.39468 * 19 18 16 39 39 H 1.08998 * 109.46838 * 60.00341 * 22 20 19 40 40 H 1.09003 * 109.47064 * 180.02562 * 22 20 19 41 41 H 1.09001 * 109.47104 * 299.99975 * 22 20 19 42 42 H 1.07998 * 119.97836 * 359.58595 * 25 24 23 43 43 H 1.07997 * 119.84376 * 180.02562 * 26 25 24 44 44 H 1.08000 * 119.96007 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.06042 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7581 -3.7122 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0933 1.4279 14 6 2.7931 -0.0357 2.0833 15 8 3.0977 1.1221 1.8844 16 6 3.2769 -0.7347 3.3111 17 8 2.8828 -1.8538 3.5675 18 7 4.1510 -0.1229 4.1346 19 6 4.7583 1.1703 3.7761 20 6 6.2429 1.1090 4.1626 21 1 6.7352 0.3176 3.5974 22 6 6.9092 2.4509 3.8529 23 8 6.3429 0.8333 5.5623 24 6 5.6179 -0.2048 6.0553 25 6 5.9772 -0.7798 7.2653 26 6 5.2406 -1.8307 7.7781 27 6 4.1433 -2.3153 7.0898 28 6 3.7777 -1.7496 5.8827 29 6 4.5139 -0.6961 5.3626 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.7082 1.1610 -3.4844 34 1 0.8008 -2.1453 2.0910 35 1 1.4218 -2.5686 0.4775 36 1 2.5072 -2.6094 1.8877 37 1 4.6620 1.3394 2.7037 38 1 4.2657 1.9743 4.3229 39 1 6.4188 3.2402 4.4227 40 1 7.9631 2.4052 4.1275 41 1 6.8207 2.6633 2.7874 42 1 6.8336 -0.4062 7.8070 43 1 5.5232 -2.2756 8.7207 44 1 3.5714 -3.1365 7.4959 45 1 2.9205 -2.1279 5.3456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276031417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:44 Heat of formation + Delta-G solvation = -56.391444 kcal Electronic energy + Delta-G solvation = -29475.532772 eV Core-core repulsion = 25459.371111 eV Total energy + Delta-G solvation = -4016.161661 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.82995 -41.23826 -39.71456 -38.62590 -37.82993 -36.48096 -34.75738 -33.65708 -31.71550 -31.36676 -30.20491 -28.25308 -27.53051 -27.35351 -26.22123 -24.38896 -23.81925 -22.50942 -21.39325 -20.46280 -19.37023 -18.69924 -18.56619 -18.10327 -17.93192 -17.22620 -17.14883 -16.85854 -16.31251 -16.12674 -15.66209 -15.33551 -15.11081 -14.93120 -14.79070 -14.51320 -14.33249 -14.12898 -13.87469 -13.60717 -13.44229 -13.35589 -13.13554 -13.00618 -12.79645 -12.76149 -12.72123 -12.58492 -12.29972 -12.18644 -12.10006 -12.02609 -11.71788 -11.34414 -11.19965 -10.58316 -10.14246 -9.63904 -9.50064 -8.94606 -8.19221 -6.35693 -0.16509 0.35650 0.59911 1.00326 1.42183 1.43489 1.53267 1.96262 2.03560 2.25733 2.42319 2.78650 2.99903 3.10001 3.31819 3.65556 3.77800 3.86537 4.10364 4.23200 4.28673 4.35064 4.42498 4.47112 4.56667 4.65818 4.68277 4.69503 4.82563 4.84586 4.92772 4.95992 5.00626 5.01756 5.17397 5.25900 5.33286 5.36925 5.41288 5.54756 5.58907 5.73203 5.84279 5.88638 6.06261 6.21456 6.34640 6.54334 6.68244 6.89750 7.34998 8.85514 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.003351 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.759589 B = 8353.643402 C = 9194.172799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.260 3.740 3 H 0.028 0.972 4 C -0.544 4.544 5 H 0.060 0.940 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.964 3.036 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.556 5.556 13 C 0.081 3.919 14 C 0.489 3.511 15 O -0.550 6.550 16 C 0.512 3.488 17 O -0.499 6.499 18 N -0.531 5.531 19 C 0.051 3.949 20 C 0.076 3.924 21 H 0.073 0.927 22 C -0.136 4.136 23 O -0.315 6.315 24 C 0.084 3.916 25 C -0.130 4.130 26 C -0.094 4.094 27 C -0.129 4.129 28 C -0.131 4.131 29 C 0.047 3.953 30 H 0.045 0.955 31 H 0.022 0.978 32 H 0.076 0.924 33 H 0.267 0.733 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.157 0.843 43 H 0.168 0.832 44 H 0.153 0.847 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.649 -3.300 18.242 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.160 3.840 3 H 0.046 0.954 4 C -0.582 4.582 5 H 0.078 0.922 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.286 5.286 13 C -0.061 4.061 14 C 0.271 3.729 15 O -0.432 6.432 16 C 0.297 3.703 17 O -0.376 6.376 18 N -0.256 5.256 19 C -0.070 4.070 20 C 0.019 3.981 21 H 0.091 0.909 22 C -0.193 4.193 23 O -0.229 6.229 24 C 0.037 3.963 25 C -0.149 4.149 26 C -0.112 4.112 27 C -0.148 4.148 28 C -0.151 4.151 29 C -0.046 4.046 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.152 0.848 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.175 0.825 43 H 0.185 0.815 44 H 0.171 0.829 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.567 -3.042 18.109 20.705 hybrid contribution -0.258 -0.143 -1.387 1.418 sum 9.308 -3.184 16.722 19.401 Atomic orbital electron populations 1.21913 0.96562 1.00383 1.00452 1.18850 0.92021 0.92789 0.80364 0.95431 1.21479 1.32554 1.13328 0.90856 0.92181 1.25651 0.94869 0.95522 1.01748 1.69986 1.36782 1.23552 1.24719 0.85460 0.78810 0.78299 0.78489 1.19477 1.20823 1.19658 1.48268 1.45502 1.13612 1.21184 1.22138 1.01980 0.79969 1.02052 1.20008 0.81373 0.86874 0.84631 1.90543 1.57814 1.17710 1.77124 1.20264 0.79987 0.85610 0.84402 1.90541 1.56729 1.17808 1.72483 1.45513 1.41229 1.22265 1.16551 1.23577 0.93605 0.83068 1.06715 1.23009 0.94297 1.01293 0.79482 0.90921 1.21766 1.01770 0.92274 1.03532 1.86018 1.64665 1.46659 1.25607 1.18922 0.89938 0.91281 0.96157 1.20804 1.02616 0.97413 0.94081 1.21404 0.94168 0.94911 1.00714 1.21381 0.98477 1.01112 0.93798 1.21765 1.00346 0.95556 0.97394 1.18360 0.97895 1.00477 0.87845 0.93581 0.95865 0.90568 0.92360 0.91728 0.90612 0.89361 0.84809 0.89315 0.90643 0.89430 0.88904 0.82534 0.81484 0.82946 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 8.97 71.98 0.65 -5.72 16 2 C 0.26 13.18 2.63 44.24 0.12 13.29 16 3 H 0.03 1.61 6.90 -2.39 -0.02 1.59 16 4 C -0.54 -28.82 7.95 25.60 0.20 -28.62 16 5 H 0.06 3.14 7.44 -2.91 -0.02 3.12 16 6 C 0.02 1.20 5.30 84.66 0.45 1.65 16 7 N -0.91 -50.47 11.32 21.45 0.24 -50.23 16 8 Si 0.96 41.89 29.54 68.60 2.03 43.92 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 N -0.56 -24.33 2.75 -828.50 -2.28 -26.61 16 13 C 0.08 2.97 8.28 127.77 1.06 4.03 16 14 C 0.49 20.64 7.59 87.23 0.66 21.31 16 15 O -0.55 -24.94 12.60 -3.29 -0.04 -24.98 16 16 C 0.51 18.86 7.50 87.23 0.65 19.51 16 17 O -0.50 -18.08 10.15 -3.38 -0.03 -18.11 16 18 N -0.53 -17.55 3.01 -629.45 -1.89 -19.44 16 19 C 0.05 1.52 5.19 86.41 0.45 1.97 16 20 C 0.08 1.83 3.58 30.77 0.11 1.94 16 21 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 22 C -0.14 -2.38 9.58 71.98 0.69 -1.69 16 23 O -0.31 -8.06 9.98 -92.25 -0.92 -8.98 16 24 C 0.08 2.22 6.51 22.63 0.15 2.36 16 25 C -0.13 -2.59 9.97 22.37 0.22 -2.37 16 26 C -0.09 -1.56 10.03 22.28 0.22 -1.33 16 27 C -0.13 -2.61 10.04 22.28 0.22 -2.39 16 28 C -0.13 -3.65 8.92 22.36 0.20 -3.45 16 29 C 0.05 1.43 6.32 38.13 0.24 1.67 16 30 H 0.05 2.01 7.67 -2.39 -0.02 1.99 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 3.95 6.07 -2.39 -0.01 3.94 16 33 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.83 7.12 -2.39 -0.02 2.81 16 36 H 0.09 3.13 5.69 -2.38 -0.01 3.11 16 37 H 0.13 4.46 4.98 -5.93 -0.03 4.44 16 38 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.15 4.51 5.19 -3.56 -0.02 4.49 16 Total: -1.00 -63.48 359.59 4.39 -59.09 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.99 Total: 23.20 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 6.30 Total: 22.15 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -3.93 Total: -96.28 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -1.00 Total: -52.08 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -63.48 4.39 -59.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276031417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.695 kcal (2) G-P(sol) polarization free energy of solvation -63.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds